CmoCh12G007240 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATCAGGTATATCATGGGTCATTCTTCACAACAAATTGTGTGTGTCTTCCACAATGGAATAAGTGAGATTTTGAGTCAGTGTTTATATAATCTTCTTCTGCCCCAAGAAATGATTCATCGAAATAAATAATGAGTCACCATCGATATCGACACATCTGAGATCGCCAAATGTTCGGGAGTTCCTCTATTCAATCCTTTTCTTCCTTCTTCTTCTTGCTGTATATCTCGTTCGTACACATCTTCTCTTTCTTTCTCGAGCCTATAGTGAGTTATAGACAGAGTGAGAAAAGGTCAAATCTCTATTGAGTTGCAAAAAGGGTAGGTATCCCACATCTTCACTTCATTCTTTCTGGTTAAAGAATCTCTTTCTAGTTGCTTTGGAACAATTAGGAGATTCTCTAGAAGAAATAGGGTAGAGGGTTCTGCTTCTGGTGGCAACATGCTATGGGGTGGCAGTCCCGCTTATGGGGTCAAATCAATACGTTCGAATATCAATCGATCTCATAAATGTCATACCACATCCCATCAATAGAATAAATAGCTTTTTCGAGAAATACGAGACATCTAAGTCATACAAGTAAAGAGAGATATTATGGATTGATGAGAAAGAAAGAGAATTCTTGGTTCAGTTCTCCACCTTAACGACAGAAAAAAGGATTGATCAAATTCTATTGATTCTGACTCATAGTGAGAATTTCTCAAATAATGACTCTGGTTATCAAATGATTGAACAACCGGGAGTAATTGACTTACGAGACTTAGTGGACATTCATCTTTAGCAGAAAGACGGACATTCCTTGCTCATTATCAGAAAATCACTTATTCAAAAACCTCGTTGTGTGGCTAACAGTTTGTTTGAATTTCCAATCTCATGGAAAACCCTTTTCCCTCCGTTTAGCCCTATCCCCGGGGGTGTTTTAGTGATAGGTTCTATAGGAACTACACGATCCATCCTATTTTGTTAAATACCTAGCGACAAACTCCTATCTTCTATTCATTACAGGTATTTCTGAACAAGTTCCTGGATAACAAGCCTAGCCTAAGGGTTTGATCATTGATGATAGTGGCTTGATGATAGTGACGATATCGACCATAACCTTGAGGCTGGAGCTTCTAAGATAAATGCGCTATGGATATGATGCCGGAAATAGATCGATTTGATATCACCCTGAAATTAGAATTAGCAAAAGCAATCTCTCCTTGCCTAATATGGATTCCAAAGATGAATGATCTGGATGTGAATGAGTTGAATTACTTATCCCTTGGTCTATTAGTGAACTTGATAAGCGCCTACAATGCTAGAATTTGCAAAGCTAGAGGCCCTTCTAGAATCCTTGCAAAACGCTCACAGAGAAAGCTAATTTAA ATGGATCAGGTATCCCACATCTTCACTTCATTCTTTCTGGTTAAAGAATCTCTTTCTAGTTGCTTTGGAACAATTAGGAGATTCTCTAGAAGAAATAGGGTAGAGGGTTCTGCTTCTGGTGGCAACATGCTATGGGGTGGCAGTCCCGCTTATGGGGAACTACACGATCCATCCTATTTTGTTAAATACCTAGCGACAAACTCCTATCTTCTATTCATTACAGATAAATGCGCTATGGATATGATGCCGGAAATAGATCGATTTGATATCACCCTGAAATTAGAATTAGCAAAAGCAATCTCTCCTTGCCTAATATGGATTCCAAAGATGAATGATCTGGATGTGAATGAGTTGAATTACTTATCCCTTGGTCTATTAGTGAACTTGATAAGCGCCTACAATGCTAGAATTTGCAAAGCTAGAGGCCCTTCTAGAATCCTTGCAAAACGCTCACAGAGAAAGCTAATTTAA ATGGATCAGGTATCCCACATCTTCACTTCATTCTTTCTGGTTAAAGAATCTCTTTCTAGTTGCTTTGGAACAATTAGGAGATTCTCTAGAAGAAATAGGGTAGAGGGTTCTGCTTCTGGTGGCAACATGCTATGGGGTGGCAGTCCCGCTTATGGGGAACTACACGATCCATCCTATTTTGTTAAATACCTAGCGACAAACTCCTATCTTCTATTCATTACAGATAAATGCGCTATGGATATGATGCCGGAAATAGATCGATTTGATATCACCCTGAAATTAGAATTAGCAAAAGCAATCTCTCCTTGCCTAATATGGATTCCAAAGATGAATGATCTGGATGTGAATGAGTTGAATTACTTATCCCTTGGTCTATTAGTGAACTTGATAAGCGCCTACAATGCTAGAATTTGCAAAGCTAGAGGCCCTTCTAGAATCCTTGCAAAACGCTCACAGAGAAAGCTAATTTAA MDQVSHIFTSFFLVKESLSSCFGTIRRFSRRNRVEGSASGGNMLWGGSPAYGELHDPSYFVKYLATNSYLLFITDKCAMDMMPEIDRFDITLKLELAKAISPCLIWIPKMNDLDVNELNYLSLGLLVNLISAYNARICKARGPSRILAKRSQRKLI Homology
BLAST of CmoCh12G007240 vs. ExPASy Swiss-Prot
Match: P08973 (Protein Ycf2 OS=Spinacia oleracea OX=3562 GN=ycf2-A PE=3 SV=2) HSP 1 Score: 96.7 bits (239), Expect = 2.5e-19 Identity = 59/124 (47.58%), Postives = 70/124 (56.45%), Query Frame = 0
BLAST of CmoCh12G007240 vs. ExPASy Swiss-Prot
Match: Q09WV7 (Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 4.3e-19 Identity = 56/116 (48.28%), Postives = 64/116 (55.17%), Query Frame = 0
BLAST of CmoCh12G007240 vs. ExPASy Swiss-Prot
Match: Q49KT6 (Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 1.6e-18 Identity = 56/121 (46.28%), Postives = 64/121 (52.89%), Query Frame = 0
HSP 2 Score: 40.0 bits (92), Expect = 2.8e-02 Identity = 16/19 (84.21%), Postives = 17/19 (89.47%), Query Frame = 0
BLAST of CmoCh12G007240 vs. ExPASy Swiss-Prot
Match: A0A379 (Protein Ycf2 OS=Coffea arabica OX=13443 GN=ycf2-A PE=3 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 2.8e-18 Identity = 56/121 (46.28%), Postives = 64/121 (52.89%), Query Frame = 0
BLAST of CmoCh12G007240 vs. ExPASy Swiss-Prot
Match: Q14F97 (Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 2.8e-18 Identity = 56/122 (45.90%), Postives = 64/122 (52.46%), Query Frame = 0
HSP 2 Score: 40.0 bits (92), Expect = 2.8e-02 Identity = 16/19 (84.21%), Postives = 17/19 (89.47%), Query Frame = 0
BLAST of CmoCh12G007240 vs. ExPASy TrEMBL
Match: A0A2N9I544 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17703 PE=4 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 8.7e-23 Identity = 77/172 (44.77%), Postives = 91/172 (52.91%), Query Frame = 0
BLAST of CmoCh12G007240 vs. ExPASy TrEMBL
Match: A0A2N9HUS1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43293 PE=4 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 8.7e-23 Identity = 77/172 (44.77%), Postives = 91/172 (52.91%), Query Frame = 0
BLAST of CmoCh12G007240 vs. ExPASy TrEMBL
Match: A0A2N9HDN4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38144 PE=4 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 8.7e-23 Identity = 77/172 (44.77%), Postives = 91/172 (52.91%), Query Frame = 0
BLAST of CmoCh12G007240 vs. ExPASy TrEMBL
Match: A0A1V0D7I6 (Protein Ycf2 OS=Cyclocarya paliurus OX=117167 GN=ycf2 PE=3 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 8.4e-18 Identity = 54/96 (56.25%), Postives = 66/96 (68.75%), Query Frame = 0
BLAST of CmoCh12G007240 vs. ExPASy TrEMBL
Match: A0A7J9MLC6 (ATPase_AAA_core domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_027202 PE=3 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 1.4e-17 Identity = 62/148 (41.89%), Postives = 78/148 (52.70%), Query Frame = 0
BLAST of CmoCh12G007240 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core ) HSP 1 Score: 86.7 bits (213), Expect = 1.9e-17 Identity = 53/121 (43.80%), Postives = 63/121 (52.07%), Query Frame = 0
BLAST of CmoCh12G007240 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core ) HSP 1 Score: 86.7 bits (213), Expect = 1.9e-17 Identity = 53/121 (43.80%), Postives = 63/121 (52.07%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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