CmoCh12G007240 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G007240
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Protein Ycf2
Location	Cmo_Chr12: 5515290 .. 5516658 (+)
RNA-Seq Expression	CmoCh12G007240
Synteny	CmoCh12G007240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAGGTATATCATGGGTCATTCTTCACAACAAATTGTGTGTGTCTTCCACAATGGAATAAGTGAGATTTTGAGTCAGTGTTTATATAATCTTCTTCTGCCCCAAGAAATGATTCATCGAAATAAATAATGAGTCACCATCGATATCGACACATCTGAGATCGCCAAATGTTCGGGAGTTCCTCTATTCAATCCTTTTCTTCCTTCTTCTTCTTGCTGTATATCTCGTTCGTACACATCTTCTCTTTCTTTCTCGAGCCTATAGTGAGTTATAGACAGAGTGAGAAAAGGTCAAATCTCTATTGAGTTGCAAAAAGGGTAGGTATCCCACATCTTCACTTCATTCTTTCTGGTTAAAGAATCTCTTTCTAGTTGCTTTGGAACAATTAGGAGATTCTCTAGAAGAAATAGGGTAGAGGGTTCTGCTTCTGGTGGCAACATGCTATGGGGTGGCAGTCCCGCTTATGGGGTCAAATCAATACGTTCGAATATCAATCGATCTCATAAATGTCATACCACATCCCATCAATAGAATAAATAGCTTTTTCGAGAAATACGAGACATCTAAGTCATACAAGTAAAGAGAGATATTATGGATTGATGAGAAAGAAAGAGAATTCTTGGTTCAGTTCTCCACCTTAACGACAGAAAAAAGGATTGATCAAATTCTATTGATTCTGACTCATAGTGAGAATTTCTCAAATAATGACTCTGGTTATCAAATGATTGAACAACCGGGAGTAATTGACTTACGAGACTTAGTGGACATTCATCTTTAGCAGAAAGACGGACATTCCTTGCTCATTATCAGAAAATCACTTATTCAAAAACCTCGTTGTGTGGCTAACAGTTTGTTTGAATTTCCAATCTCATGGAAAACCCTTTTCCCTCCGTTTAGCCCTATCCCCGGGGGTGTTTTAGTGATAGGTTCTATAGGAACTACACGATCCATCCTATTTTGTTAAATACCTAGCGACAAACTCCTATCTTCTATTCATTACAGGTATTTCTGAACAAGTTCCTGGATAACAAGCCTAGCCTAAGGGTTTGATCATTGATGATAGTGGCTTGATGATAGTGACGATATCGACCATAACCTTGAGGCTGGAGCTTCTAAGATAAATGCGCTATGGATATGATGCCGGAAATAGATCGATTTGATATCACCCTGAAATTAGAATTAGCAAAAGCAATCTCTCCTTGCCTAATATGGATTCCAAAGATGAATGATCTGGATGTGAATGAGTTGAATTACTTATCCCTTGGTCTATTAGTGAACTTGATAAGCGCCTACAATGCTAGAATTTGCAAAGCTAGAGGCCCTTCTAGAATCCTTGCAAAACGCTCACAGAGAAAGCTAATTTAA

mRNA sequence

ATGGATCAGGTATCCCACATCTTCACTTCATTCTTTCTGGTTAAAGAATCTCTTTCTAGTTGCTTTGGAACAATTAGGAGATTCTCTAGAAGAAATAGGGTAGAGGGTTCTGCTTCTGGTGGCAACATGCTATGGGGTGGCAGTCCCGCTTATGGGGAACTACACGATCCATCCTATTTTGTTAAATACCTAGCGACAAACTCCTATCTTCTATTCATTACAGATAAATGCGCTATGGATATGATGCCGGAAATAGATCGATTTGATATCACCCTGAAATTAGAATTAGCAAAAGCAATCTCTCCTTGCCTAATATGGATTCCAAAGATGAATGATCTGGATGTGAATGAGTTGAATTACTTATCCCTTGGTCTATTAGTGAACTTGATAAGCGCCTACAATGCTAGAATTTGCAAAGCTAGAGGCCCTTCTAGAATCCTTGCAAAACGCTCACAGAGAAAGCTAATTTAA

Coding sequence (CDS)

ATGGATCAGGTATCCCACATCTTCACTTCATTCTTTCTGGTTAAAGAATCTCTTTCTAGTTGCTTTGGAACAATTAGGAGATTCTCTAGAAGAAATAGGGTAGAGGGTTCTGCTTCTGGTGGCAACATGCTATGGGGTGGCAGTCCCGCTTATGGGGAACTACACGATCCATCCTATTTTGTTAAATACCTAGCGACAAACTCCTATCTTCTATTCATTACAGATAAATGCGCTATGGATATGATGCCGGAAATAGATCGATTTGATATCACCCTGAAATTAGAATTAGCAAAAGCAATCTCTCCTTGCCTAATATGGATTCCAAAGATGAATGATCTGGATGTGAATGAGTTGAATTACTTATCCCTTGGTCTATTAGTGAACTTGATAAGCGCCTACAATGCTAGAATTTGCAAAGCTAGAGGCCCTTCTAGAATCCTTGCAAAACGCTCACAGAGAAAGCTAATTTAA

Protein sequence

MDQVSHIFTSFFLVKESLSSCFGTIRRFSRRNRVEGSASGGNMLWGGSPAYGELHDPSYFVKYLATNSYLLFITDKCAMDMMPEIDRFDITLKLELAKAISPCLIWIPKMNDLDVNELNYLSLGLLVNLISAYNARICKARGPSRILAKRSQRKLI

Homology

[Close]

BLAST of CmoCh12G007240 vs. ExPASy Swiss-Prot
Match: P08973 (Protein Ycf2 OS=Spinacia oleracea OX=3562 GN=ycf2-A PE=3 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 2.5e-19
Identity = 59/124 (47.58%), Postives = 70/124 (56.45%), Query Frame = 0


Query: 58   SYFVKYLATNSYLLFIT------------------------------------DKCAMDM 117
            SY VKYLATNSY+ FIT                                    +   MDM
Sbjct: 1491 SYLVKYLATNSYVPFITVFLNKFLDNKPKGSLIDASDDIDRDLDTELELLTMMNALTMDM 1550

Query: 118  MPEIDRFDITLKLELAKAISPCLIWIPKMNDLDVNELNYLSLGLLVNLISAYNARICKAR 146
            MPEID+F ITL+ ELAKA+SPC+IWIP ++DLDVNE NYLSLGL VN    Y +R C+ R
Sbjct: 1551 MPEIDQFSITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGLFVN----YLSRDCE-R 1609

[Close]

BLAST of CmoCh12G007240 vs. ExPASy Swiss-Prot
Match: Q09WV7 (Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.3e-19
Identity = 56/116 (48.28%), Postives = 64/116 (55.17%), Query Frame = 0


Query: 58   SYFVKYLATNSYLLFIT------------------------------------------D 117
            SY VKYLATNSY+ FIT                                          +
Sbjct: 1651 SYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDSDDIDDSDDIDRDLDTELELLTMMN 1710

Query: 118  KCAMDMMPEIDRFDITLKLELAKAISPCLIWIPKMNDLDVNELNYLSLGLLVNLIS 132
               MDMMPEIDRF ITL+ ELAKA+SPC+IWIP ++DLDVNE NYLSLGLLVN +S
Sbjct: 1711 ALTMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGLLVNYLS 1766

[Close]

BLAST of CmoCh12G007240 vs. ExPASy Swiss-Prot
Match: Q49KT6 (Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-18
Identity = 56/121 (46.28%), Postives = 64/121 (52.89%), Query Frame = 0


Query: 58   SYFVKYLATNSYLLFIT------------------------------------------- 117
            SY VKYLATNSY+ FIT                                           
Sbjct: 1641 SYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIEDSDDIEDSDNIDRDLDTELEL 1700

Query: 118  ----DKCAMDMMPEIDRFDITLKLELAKAISPCLIWIPKMNDLDVNELNYLSLGLLVNLI 132
                +   MDMMPEIDRF ITL+ ELAKA+SPC+IWIP ++DLDVNE NYLSLGLLVN +
Sbjct: 1701 LTRMNALTMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGLLVNYL 1760

HSP 2 Score: 40.0 bits (92), Expect = 2.8e-02
Identity = 16/19 (84.21%), Postives = 17/19 (89.47%), Query Frame = 0


Query: 34   VEGSASGGNMLWGGSPAYG 53
            + GSASGGNMLWGG PAYG
Sbjct: 1420 IRGSASGGNMLWGGGPAYG 1438

[Close]

BLAST of CmoCh12G007240 vs. ExPASy Swiss-Prot
Match: A0A379 (Protein Ycf2 OS=Coffea arabica OX=13443 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-18
Identity = 56/121 (46.28%), Postives = 64/121 (52.89%), Query Frame = 0


Query: 58   SYFVKYLATNSYLLFIT------------------------------------------- 117
            SY VKYLATNSY+ FIT                                           
Sbjct: 1642 SYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDINIDDSDDIDASDDIDRDLDTELEL 1701

Query: 118  ----DKCAMDMMPEIDRFDITLKLELAKAISPCLIWIPKMNDLDVNELNYLSLGLLVNLI 132
                +   MDMMPEIDRF ITL+ ELAKA+SPC+IWIP ++DLDVNE NYLSLGLLVN +
Sbjct: 1702 LTMMNALTMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGLLVNHL 1761

[Close]

BLAST of CmoCh12G007240 vs. ExPASy Swiss-Prot
Match: Q14F97 (Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-18
Identity = 56/122 (45.90%), Postives = 64/122 (52.46%), Query Frame = 0


Query: 58   SYFVKYLATNSYLLFIT------------------------------------------- 117
            SY VKYLATNSY+ FIT                                           
Sbjct: 1642 SYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDRDDIDDSDDIDVSDDIDRDLDTELE 1701

Query: 118  -----DKCAMDMMPEIDRFDITLKLELAKAISPCLIWIPKMNDLDVNELNYLSLGLLVNL 132
                 +   MDMMPEIDRF ITL+ ELAKA+SPC+IWIP ++DLDVNE NYLSLGLLVN 
Sbjct: 1702 LLTRMNVLTMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESNYLSLGLLVNY 1761

HSP 2 Score: 40.0 bits (92), Expect = 2.8e-02
Identity = 16/19 (84.21%), Postives = 17/19 (89.47%), Query Frame = 0


Query: 34   VEGSASGGNMLWGGSPAYG 53
            + GSASGGNMLWGG PAYG
Sbjct: 1421 IRGSASGGNMLWGGGPAYG 1439

[Close]

BLAST of CmoCh12G007240 vs. ExPASy TrEMBL
Match: A0A2N9I544 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17703 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 8.7e-23
Identity = 77/172 (44.77%), Postives = 91/172 (52.91%), Query Frame = 0


Query: 1   MDQVSHIFTSFFLVK-ESLSSCFGTIRRFSRRNRVEGSASGGNMLWGGSPAYG------- 60
           +DQ   +  + FLV  E L      IR         G ASGGNMLWGG PAYG       
Sbjct: 546 LDQKQFLNENLFLVALEQLGDSIEEIR---------GYASGGNMLWGGGPAYGVKSILFL 605

Query: 61  -----------------ELHDPSYFVKYLATNSYLLFITDKCAMDMMPEIDRFDITLKLE 120
                            ++ D     + L T   LL +T+   MDMMPEIDRF ITL+ E
Sbjct: 606 NKFLDNKPKGFLIDDSDDIDDSDDIDRELDTELELLTMTNALTMDMMPEIDRFYITLQFE 665

Query: 121 LAKAISPCLIWIPKMNDLDVNELNYLSLGLLVNLISAYNARICKARGPSRIL 148
           LAKA+SPC IWIP ++DLDVNE NYLSLGLLVN    Y +R C+ R    IL
Sbjct: 666 LAKAMSPCRIWIPNIHDLDVNESNYLSLGLLVN----YLSRDCERRSTRNIL 704

[Close]

BLAST of CmoCh12G007240 vs. ExPASy TrEMBL
Match: A0A2N9HUS1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43293 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 8.7e-23
Identity = 77/172 (44.77%), Postives = 91/172 (52.91%), Query Frame = 0


Query: 1   MDQVSHIFTSFFLVK-ESLSSCFGTIRRFSRRNRVEGSASGGNMLWGGSPAYG------- 60
           +DQ   +  + FLV  E L      IR         G ASGGNMLWGG PAYG       
Sbjct: 546 LDQKQFLNENLFLVALEQLGDSIEEIR---------GYASGGNMLWGGGPAYGVKSILFL 605

Query: 61  -----------------ELHDPSYFVKYLATNSYLLFITDKCAMDMMPEIDRFDITLKLE 120
                            ++ D     + L T   LL +T+   MDMMPEIDRF ITL+ E
Sbjct: 606 NKFLDNKPKGFLIDDSDDIDDSDDIDRELDTELELLTMTNALTMDMMPEIDRFYITLQFE 665

Query: 121 LAKAISPCLIWIPKMNDLDVNELNYLSLGLLVNLISAYNARICKARGPSRIL 148
           LAKA+SPC IWIP ++DLDVNE NYLSLGLLVN    Y +R C+ R    IL
Sbjct: 666 LAKAMSPCRIWIPNIHDLDVNESNYLSLGLLVN----YLSRDCERRSTRNIL 704

[Close]

BLAST of CmoCh12G007240 vs. ExPASy TrEMBL
Match: A0A2N9HDN4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38144 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 8.7e-23
Identity = 77/172 (44.77%), Postives = 91/172 (52.91%), Query Frame = 0


Query: 1   MDQVSHIFTSFFLVK-ESLSSCFGTIRRFSRRNRVEGSASGGNMLWGGSPAYG------- 60
           +DQ   +  + FLV  E L      IR         G ASGGNMLWGG PAYG       
Sbjct: 557 LDQKQFLNENLFLVALEQLGDSIEEIR---------GYASGGNMLWGGGPAYGVKSILFL 616

Query: 61  -----------------ELHDPSYFVKYLATNSYLLFITDKCAMDMMPEIDRFDITLKLE 120
                            ++ D     + L T   LL +T+   MDMMPEIDRF ITL+ E
Sbjct: 617 NKFLDNKPKGFLIDDSDDIDDSDDIDRELDTELELLTMTNALTMDMMPEIDRFYITLQFE 676

Query: 121 LAKAISPCLIWIPKMNDLDVNELNYLSLGLLVNLISAYNARICKARGPSRIL 148
           LAKA+SPC IWIP ++DLDVNE NYLSLGLLVN    Y +R C+ R    IL
Sbjct: 677 LAKAMSPCRIWIPNIHDLDVNESNYLSLGLLVN----YLSRDCERRSTRNIL 715

[Close]

BLAST of CmoCh12G007240 vs. ExPASy TrEMBL
Match: A0A1V0D7I6 (Protein Ycf2 OS=Cyclocarya paliurus OX=117167 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 8.4e-18
Identity = 54/96 (56.25%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 52   GELHDPSYFVKYLATNSYLLFITDKCAMDMMPEIDRFDITLKLELAKAISPCLIWIPKMN 111
            G++ D     + L T   LL +T+   MDMMPEIDRF ITL+ ELAKA+SPC+IWIP ++
Sbjct: 1683 GDIGDSDDIDRDLDTELELLTMTNALTMDMMPEIDRFYITLQFELAKAMSPCIIWIPNIH 1742

Query: 112  DLDVNELNYLSLGLLVNLISAYNARICKARGPSRIL 148
            DLDVNE NYLSLGLLVN    Y +R C+ R    IL
Sbjct: 1743 DLDVNESNYLSLGLLVN----YLSRDCERRSTRNIL 1774

[Close]

BLAST of CmoCh12G007240 vs. ExPASy TrEMBL
Match: A0A7J9MLC6 (ATPase_AAA_core domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_027202 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.4e-17
Identity = 62/148 (41.89%), Postives = 78/148 (52.70%), Query Frame = 0


Query: 12  FLVKESLSSCFGTIRRFSRRNRVEGSASGGNMLWGGSPAYGE------------------ 71
           F +K  L      +R F     + GSA G NMLWGG PAYG                   
Sbjct: 24  FWLKNLLLVALEQLRDF--LEEIWGSAFGSNMLWGGGPAYGVKFLHNKLKGFLIDDIDIG 83

Query: 72  ----------LHDPSYFVKYLATNSYLLFITDKCAMDMMPEIDRFDITLKLELAKAISPC 131
                     + D     + L T   LL + +   M+MM EID+F+ITL+ ELAKA+SPC
Sbjct: 84  DSDDIDASDIIDDSDAIDRDLDTELELLTMMNALTMEMMSEIDQFNITLQFELAKAMSPC 143

[Close]

BLAST of CmoCh12G007240 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 86.7 bits (213), Expect = 1.9e-17
Identity = 53/121 (43.80%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 58   SYFVKYLATNSYLLFIT------------------------------------------- 117
            SY VKYLATNSY+ FIT                                           
Sbjct: 1655 SYLVKYLATNSYVPFITVFLNKFLDNKPKGFFIDDIDIDDSDDIDASNDIDRELDTELEL 1714

Query: 118  ----DKCAMDMMPEIDRFDITLKLELAKAISPCLIWIPKMNDLDVNELNYLSLGLLVNLI 132
                +   MDMM EIDRF ITL+ ELAKA+SPC+IWIP ++DLDVNE +YL+LGLLVN +
Sbjct: 1715 LTMMNALTMDMMLEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESSYLALGLLVNSL 1774

[Close]

BLAST of CmoCh12G007240 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 86.7 bits (213), Expect = 1.9e-17
Identity = 53/121 (43.80%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 58   SYFVKYLATNSYLLFIT------------------------------------------- 117
            SY VKYLATNSY+ FIT                                           
Sbjct: 1655 SYLVKYLATNSYVPFITVFLNKFLDNKPKGFFIDDIDIDDSDDIDASNDIDRELDTELEL 1714

Query: 118  ----DKCAMDMMPEIDRFDITLKLELAKAISPCLIWIPKMNDLDVNELNYLSLGLLVNLI 132
                +   MDMM EIDRF ITL+ ELAKA+SPC+IWIP ++DLDVNE +YL+LGLLVN +
Sbjct: 1715 LTMMNALTMDMMLEIDRFYITLQFELAKAMSPCIIWIPNIHDLDVNESSYLALGLLVNSL 1774

The following BLAST results are available for this feature:

BLAST of CmoCh12G007240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P08973	2.5e-19	47.58	Protein Ycf2 OS=Spinacia oleracea OX=3562 GN=ycf2-A PE=3 SV=2	[more]
Q09WV7	4.3e-19	48.28	Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1	[more]
Q49KT6	1.6e-18	46.28	Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1	[more]
A0A379	2.8e-18	46.28	Protein Ycf2 OS=Coffea arabica OX=13443 GN=ycf2-A PE=3 SV=1	[more]
Q14F97	2.8e-18	45.90	Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1	[more]

BLAST of CmoCh12G007240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9I544	8.7e-23	44.77	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17703 PE=4 SV=1	[more]
A0A2N9HUS1	8.7e-23	44.77	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43293 PE=4 SV=1	[more]
A0A2N9HDN4	8.7e-23	44.77	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38144 PE=4 SV=1	[more]
A0A1V0D7I6	8.4e-18	56.25	Protein Ycf2 OS=Cyclocarya paliurus OX=117167 GN=ycf2 PE=3 SV=1	[more]
A0A7J9MLC6	1.4e-17	41.89	ATPase_AAA_core domain-containing protein OS=Gossypium schwendimanii OX=34291 GN...	[more]

BLAST of CmoCh12G007240 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	1.9e-17	43.80	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	1.9e-17	43.80	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33078:SF55	PROTEIN YCF2	coord: 79..131
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 79..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G007240.1	CmoCh12G007240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity