CmoCh12G006210 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G006210
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationCmo_Chr12: 3893979 .. 3895484 (-)
RNA-Seq ExpressionCmoCh12G006210
SyntenyCmoCh12G006210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCCCTGTTCTCAACCACTACAATCTCTTCCATTCTGGTGAAACGAAATGGAGGAATTAGCTGCCAGATTCCGGTGGCTCATTTCCAGACCAACTCCAGAAGGCGACCACCAAAAAACCTCCTCTATCCACGGCGGACCAAGCTTCCCCCTGATCCCGGCGTCAATCAATTCTTGAAGAAACGAACCTCTGGCCCTCAGCCTGACACATCCTTCCCAGATTTGATTTCGAGCGAGAAAATCGGATTGCCGGAAGAAGAACTTGACGAGATTGAAGAAACCGCTGCGGATAACTATTTCGCCAATGATGATAACGACAGTGATGTTGTTTGGGATTCGGAAGAAATTGAAGCTATTACATCACTCTTCCGAGGGAGAATTCCTCAGAAACCTGGTAAATTGAACCGGGAGAGACCTCTTCCTCTCCCACTTCCTCACAAGCTACGACCACCAGGACTTCCTAACCCTAAAATTCGCCCAAGAACAGCGGTTTCTTCGCGTGCACTGATGTCTAAGCAAGTCTATAAACGCCCCGATTTTCTTATTGGACTTGCAAGAGCGATTAGAGATTTGAAACCGGAGGAGAATGTGTCCAAAGTTCTCAACAGGTGGGCACCATTTTTGCAGAAGGGGTCGCTGTCGTTAACGATCAAGGAACTAGGTCATATGGGTCTTGCTGATAGAGCTCTAAAGACGTTCTGTTGGGTACAAGAGCAACCTCGACTCTATCCAGATGATCGTGTTTTGGCCTCTACCGTTGAGGTCCTCGCAAGGAACCATGAACTTAAAATACCTTTCAACCTGGATGAGTTCACTAAACTTGCGAGTCGTGGTGTGCTCGAGGCAATGATGAGAGGGTTCATCAAAGGTGGGAGGTTAAGCCTTGCTTGGAAGCTTCTTGTAGCTGCCAAGAACGGTAAGAGAATGTTGGATCCTAGCGTTTATGTGAAGTTGATATTGGAGATTGGTAAGAACCCTGATAAAAACATGCTGGTACTTGCCTTACTAGATGAACTAGGACAAAGAGAAGCCTTGAATTTAAACCAGCAAGATACATCAGCTATCATTAAGGTCAGCACAAGGCTTGGTAAATTTGAAATTGCTGAAAGACTTTATAGCTGGTATGTTGAATCTGGGCATGAACCCAGTGTGGTTATGTACACTGCTTTAGTTCATAATCGCTATTCAGAGAGGAAGTATAGGGAGGCATTATCTGTAGTGTGGGAAATGGAGGCTGCAAACTCTCCTTTTGATCTTCCTGCTTATAGTGTAGTGATGAAGCTTTTTGTTGCTCTTGGGGATCTTTCAAGGGCTGTTAGATACTTTGCAAAGCTTAAGGAAGCTGGTTTTACCCCTACATATTGTATATATAGGAACTTGATTACCATTTATTTAGCTGCTGGCAGGTTAGCCAAGTGTAAGGAAATCTACAAGGAAGCAGAGAATGCTGGATATGTCATGGACAAACAAATTACCTCAATGTTGTTGCAAGCAAAAAGATGA

mRNA sequence

ATGGATTCCCTGTTCTCAACCACTACAATCTCTTCCATTCTGGTGAAACGAAATGGAGGAATTAGCTGCCAGATTCCGGTGGCTCATTTCCAGACCAACTCCAGAAGGCGACCACCAAAAAACCTCCTCTATCCACGGCGGACCAAGCTTCCCCCTGATCCCGGCGTCAATCAATTCTTGAAGAAACGAACCTCTGGCCCTCAGCCTGACACATCCTTCCCAGATTTGATTTCGAGCGAGAAAATCGGATTGCCGGAAGAAGAACTTGACGAGATTGAAGAAACCGCTGCGGATAACTATTTCGCCAATGATGATAACGACAGTGATGTTGTTTGGGATTCGGAAGAAATTGAAGCTATTACATCACTCTTCCGAGGGAGAATTCCTCAGAAACCTGGTAAATTGAACCGGGAGAGACCTCTTCCTCTCCCACTTCCTCACAAGCTACGACCACCAGGACTTCCTAACCCTAAAATTCGCCCAAGAACAGCGGTTTCTTCGCGTGCACTGATGTCTAAGCAAGTCTATAAACGCCCCGATTTTCTTATTGGACTTGCAAGAGCGATTAGAGATTTGAAACCGGAGGAGAATGTGTCCAAAGTTCTCAACAGGTGGGCACCATTTTTGCAGAAGGGGTCGCTGTCGTTAACGATCAAGGAACTAGGTCATATGGGTCTTGCTGATAGAGCTCTAAAGACGTTCTGTTGGGTACAAGAGCAACCTCGACTCTATCCAGATGATCGTGTTTTGGCCTCTACCGTTGAGGTCCTCGCAAGGAACCATGAACTTAAAATACCTTTCAACCTGGATGAGTTCACTAAACTTGCGAGTCGTGGTGTGCTCGAGGCAATGATGAGAGGGTTCATCAAAGGTGGGAGGTTAAGCCTTGCTTGGAAGCTTCTTGTAGCTGCCAAGAACGGTAAGAGAATGTTGGATCCTAGCGTTTATGTGAAGTTGATATTGGAGATTGGTAAGAACCCTGATAAAAACATGCTGGTACTTGCCTTACTAGATGAACTAGGACAAAGAGAAGCCTTGAATTTAAACCAGCAAGATACATCAGCTATCATTAAGGTCAGCACAAGGCTTGGTAAATTTGAAATTGCTGAAAGACTTTATAGCTGGTATGTTGAATCTGGGCATGAACCCAGTGTGGTTATGTACACTGCTTTAGTTCATAATCGCTATTCAGAGAGGAAGTATAGGGAGGCATTATCTGTAGTGTGGGAAATGGAGGCTGCAAACTCTCCTTTTGATCTTCCTGCTTATAGTGTAGTGATGAAGCTTTTTGTTGCTCTTGGGGATCTTTCAAGGGCTGTTAGATACTTTGCAAAGCTTAAGGAAGCTGGTTTTACCCCTACATATTGTATATATAGGAACTTGATTACCATTTATTTAGCTGCTGGCAGGTTAGCCAAGTGTAAGGAAATCTACAAGGAAGCAGAGAATGCTGGATATGTCATGGACAAACAAATTACCTCAATGTTGTTGCAAGCAAAAAGATGA

Coding sequence (CDS)

ATGGATTCCCTGTTCTCAACCACTACAATCTCTTCCATTCTGGTGAAACGAAATGGAGGAATTAGCTGCCAGATTCCGGTGGCTCATTTCCAGACCAACTCCAGAAGGCGACCACCAAAAAACCTCCTCTATCCACGGCGGACCAAGCTTCCCCCTGATCCCGGCGTCAATCAATTCTTGAAGAAACGAACCTCTGGCCCTCAGCCTGACACATCCTTCCCAGATTTGATTTCGAGCGAGAAAATCGGATTGCCGGAAGAAGAACTTGACGAGATTGAAGAAACCGCTGCGGATAACTATTTCGCCAATGATGATAACGACAGTGATGTTGTTTGGGATTCGGAAGAAATTGAAGCTATTACATCACTCTTCCGAGGGAGAATTCCTCAGAAACCTGGTAAATTGAACCGGGAGAGACCTCTTCCTCTCCCACTTCCTCACAAGCTACGACCACCAGGACTTCCTAACCCTAAAATTCGCCCAAGAACAGCGGTTTCTTCGCGTGCACTGATGTCTAAGCAAGTCTATAAACGCCCCGATTTTCTTATTGGACTTGCAAGAGCGATTAGAGATTTGAAACCGGAGGAGAATGTGTCCAAAGTTCTCAACAGGTGGGCACCATTTTTGCAGAAGGGGTCGCTGTCGTTAACGATCAAGGAACTAGGTCATATGGGTCTTGCTGATAGAGCTCTAAAGACGTTCTGTTGGGTACAAGAGCAACCTCGACTCTATCCAGATGATCGTGTTTTGGCCTCTACCGTTGAGGTCCTCGCAAGGAACCATGAACTTAAAATACCTTTCAACCTGGATGAGTTCACTAAACTTGCGAGTCGTGGTGTGCTCGAGGCAATGATGAGAGGGTTCATCAAAGGTGGGAGGTTAAGCCTTGCTTGGAAGCTTCTTGTAGCTGCCAAGAACGGTAAGAGAATGTTGGATCCTAGCGTTTATGTGAAGTTGATATTGGAGATTGGTAAGAACCCTGATAAAAACATGCTGGTACTTGCCTTACTAGATGAACTAGGACAAAGAGAAGCCTTGAATTTAAACCAGCAAGATACATCAGCTATCATTAAGGTCAGCACAAGGCTTGGTAAATTTGAAATTGCTGAAAGACTTTATAGCTGGTATGTTGAATCTGGGCATGAACCCAGTGTGGTTATGTACACTGCTTTAGTTCATAATCGCTATTCAGAGAGGAAGTATAGGGAGGCATTATCTGTAGTGTGGGAAATGGAGGCTGCAAACTCTCCTTTTGATCTTCCTGCTTATAGTGTAGTGATGAAGCTTTTTGTTGCTCTTGGGGATCTTTCAAGGGCTGTTAGATACTTTGCAAAGCTTAAGGAAGCTGGTTTTACCCCTACATATTGTATATATAGGAACTTGATTACCATTTATTTAGCTGCTGGCAGGTTAGCCAAGTGTAAGGAAATCTACAAGGAAGCAGAGAATGCTGGATATGTCATGGACAAACAAATTACCTCAATGTTGTTGCAAGCAAAAAGATGA

Protein sequence

MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFLKKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAITSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPDFLIGLARAIRDLKPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQPRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKLLVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIKVSTRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANSPFDLPAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKEAENAGYVMDKQITSMLLQAKR
Homology
BLAST of CmoCh12G006210 vs. ExPASy Swiss-Prot
Match: Q5XET4 (Pentatricopeptide repeat-containing protein At2g01860 OS=Arabidopsis thaliana OX=3702 GN=EMB975 PE=2 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 6.9e-135
Identity = 262/474 (55.27%), Postives = 347/474 (73.21%), Query Frame = 0

Query: 31  QTNSRRRPPKNLLYPRRTKLPPDPGVNQFLKKRTSGPQPDTSFPDLISSEKIGLPEEELD 90
           Q N  ++  KNL  PRRTKLPPD GVN FL+K    P                + +++ +
Sbjct: 34  QRNHSKKLTKNLRNPRRTKLPPDFGVNLFLRKPKIEPL---------------VIDDDDE 93

Query: 91  EIEETAADNYFANDDNDSDVVWDSEEIEAITSLFRGRIPQKPGKLNRERPLPLPLPHKLR 150
           +++E+       NDD+D+ VVW+ EEIEAI+SLF+ RIPQKP K +R RPLPLP PHKLR
Sbjct: 94  QVQES------VNDDDDA-VVWEPEEIEAISSLFQKRIPQKPDKPSRVRPLPLPQPHKLR 153

Query: 151 PPGLPNPKIRPRTAVSSRAL--MSKQVYKRPDFLIGLARAIRDL-KPEENVSKVLNRWAP 210
           P GLP PK   +  + S AL  +SKQVYK P FLIGLAR I+ L   + +VS VLN+W  
Sbjct: 154 PLGLPTPK---KNIIRSPALSSVSKQVYKDPSFLIGLAREIKSLPSSDADVSLVLNKWVS 213

Query: 211 FLQKGSLSLTIKELGHMGLADRALKTFCWVQEQPRLYPDDRVLASTVEVLARNHELKIPF 270
           FL+KGSLS TI+ELGHMGL +RAL+T+ W ++   L PD+R+LAST++VLA++HELK+  
Sbjct: 214 FLRKGSLSTTIRELGHMGLPERALQTYHWAEKHSHLVPDNRILASTIQVLAKHHELKL-- 273

Query: 271 NLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKLLVAAKNGKRMLDPSVYVKLILEIGKNP 330
            L     LAS+ V+EAM++G I+GG L+LA KL++ +K+  R+LD SVYVK+ILEI KNP
Sbjct: 274 -LKFDNSLASKNVIEAMIKGCIEGGWLNLARKLILISKSNNRILDSSVYVKMILEIAKNP 333

Query: 331 DKNMLVLALLDELGQREALNLNQQDTSAIIKVSTRLGKFEIAERLYSWYVESGHEPSVVM 390
           DK  LV+ALL+EL +RE L L+QQD ++I+K+  +LG+FE+ E L+ W+  S  EPSVVM
Sbjct: 334 DKYHLVVALLEELKKREDLKLSQQDCTSIMKICVKLGEFELVESLFDWFKASNREPSVVM 393

Query: 391 YTALVHNRYSERKYREALSVVWEMEAANSPFDLPAYSVVMKLFVALGDLSRAVRYFAKLK 450
           YT ++H+RYSE+KYREA+SVVWEME +N   DLPAY VV+KLFVAL DL RA+RY++KLK
Sbjct: 394 YTTMIHSRYSEQKYREAMSVVWEMEESNCLLDLPAYRVVIKLFVALDDLGRAMRYYSKLK 453

Query: 451 EAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKEAENAGYVMDKQITSMLLQAKR 502
           EAGF+PTY IYR++I++Y A+GRL KCKEI KE E+AG  +DK  +  LLQ ++
Sbjct: 454 EAGFSPTYDIYRDMISVYTASGRLTKCKEICKEVEDAGLRLDKDTSFRLLQLEK 479

BLAST of CmoCh12G006210 vs. ExPASy Swiss-Prot
Match: Q9S7Q2 (Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PTAC2 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.9e-13
Identity = 68/322 (21.12%), Postives = 146/322 (45.34%), Query Frame = 0

Query: 185 LARAIRDLKPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQPRLY 244
           L   +  L P  ++++ L+ +   L     +L  KE    G   R+L+ F ++Q Q    
Sbjct: 79  LINKLSSLPPRGSIARCLDIFKNKLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCK 138

Query: 245 PDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGV------LEAMMRGFIKGGRLSLAW 304
           P++ +    + +L R  E  +   L+ F ++ S+GV        A++  + + GR   + 
Sbjct: 139 PNEHIYTIMISLLGR--EGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSL 198

Query: 305 KLLVAAKNGKRMLDPSV--YVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAI 364
           +LL   KN K  + PS+  Y  +I    +       +L L  E+ + E +  +    + +
Sbjct: 199 ELLDRMKNEK--ISPSILTYNTVINACARGGLDWEGLLGLFAEM-RHEGIQPDIVTYNTL 258

Query: 365 IKVSTRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANS 424
           +      G  + AE ++    + G  P +  Y+ LV      R+  +   ++ EM +  S
Sbjct: 259 LSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGS 318

Query: 425 PFDLPAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKE 484
             D+ +Y+V+++ +   G +  A+  F +++ AG TP    Y  L+ ++  +GR    ++
Sbjct: 319 LPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQ 378

Query: 485 IYKEAENAGYVMDKQITSMLLQ 499
           ++ E +++    D    ++L++
Sbjct: 379 LFLEMKSSNTDPDAATYNILIE 395

BLAST of CmoCh12G006210 vs. ExPASy Swiss-Prot
Match: O64624 (Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g18940 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.8e-10
Identity = 75/310 (24.19%), Postives = 127/310 (40.97%), Query Frame = 0

Query: 193 KPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWV---QEQPRLYPDDRV 252
           +P   +S+  +     L +  L   +K L   G  +RA+  F W+        L  D +V
Sbjct: 118 QPLTGLSRFFDSVKSELLRTDLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHQV 177

Query: 253 LASTVEVLARNHEL--------KIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKLL 312
           +   V +L R  +         KIP  L E+  L        ++  + + G+   A  L 
Sbjct: 178 IEIFVRILGRESQYSVAAKLLDKIP--LQEY--LLDVRAYTTILHAYSRTGKYEKAIDLF 237

Query: 313 VAAKNGKRMLDPS---VYVKLILEI-GKNPDKNMLVLALLDELGQREALNLNQQDTSAII 372
              K     + PS   V   +IL++ GK       +L +LDE+ + + L  ++   S ++
Sbjct: 238 ERMKE----MGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEM-RSKGLKFDEFTCSTVL 297

Query: 373 KVSTRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANSP 432
               R G    A+  ++     G+EP  V Y AL+        Y EALSV+ EME  + P
Sbjct: 298 SACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCP 357

Query: 433 FDLPAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEI 488
            D   Y+ ++  +V  G    A      + + G  P    Y  +I  Y  AG+  +  ++
Sbjct: 358 ADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKL 417

BLAST of CmoCh12G006210 vs. ExPASy Swiss-Prot
Match: Q66GP4 (Pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g13770 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-10
Identity = 60/237 (25.32%), Postives = 111/237 (46.84%), Query Frame = 0

Query: 269 LDEFTKLASRGVLEA------MMRGFIKGGRLSLAWKLLVAAKNGKRMLDPSVYVKLILE 328
           L+   ++  +G+ E+      ++R F +   + +  KL   A   K + DP + +K++L 
Sbjct: 268 LEVLEEMKDKGIPESSELYSMLIRAFAEAREVVITEKLFKEAGGKKLLKDPEMCLKVVLM 327

Query: 329 IGK--NPDKNMLVLALLDELGQREALNLNQQDTSAIIKVSTRLGKFEIAERLYSWYVESG 388
             +  N +  + V+A +    ++  L +      AI+   ++   F  A ++Y W ++  
Sbjct: 328 YVREGNMETTLEVVAAM----RKAELKVTDCILCAIVNGFSKQRGFAEAVKVYEWAMKEE 387

Query: 389 HEPSVVMYTALVHNRYSERKYREALSVVWEMEAANSPFDLPAYSVVMKLFVALGDLSRAV 448
            E   V Y   ++      KY +A  +  EM        + AYS +M ++     LS AV
Sbjct: 388 CEAGQVTYAIAINAYCRLEKYNKAEMLFDEMVKKGFDKCVVAYSNIMDMYGKTRRLSDAV 447

Query: 449 RYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKEAENAGYVMDK-QITSML 497
           R  AK+K+ G  P   IY +LI ++  A  L + ++I+KE + A  + DK   TSM+
Sbjct: 448 RLMAKMKQRGCKPNIWIYNSLIDMHGRAMDLRRAEKIWKEMKRAKVLPDKVSYTSMI 500

BLAST of CmoCh12G006210 vs. ExPASy Swiss-Prot
Match: Q8GZ63 (Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana OX=3702 GN=At5g25630 PE=2 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 3.4e-09
Identity = 35/122 (28.69%), Postives = 62/122 (50.82%), Query Frame = 0

Query: 356 IIKVSTRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAAN 415
           ++ V    G+   A+ ++    E+GH PS++ YT L+     +++Y    S+V E+E + 
Sbjct: 51  LMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSG 110

Query: 416 SPFDLPAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCK 475
           +  D   ++ V+  F   G++  AV+   K+KE G  PT   Y  LI  Y  AG+  +  
Sbjct: 111 TKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSS 170

Query: 476 EI 478
           E+
Sbjct: 171 EL 172

BLAST of CmoCh12G006210 vs. ExPASy TrEMBL
Match: A0A6J1GIP2 (pentatricopeptide repeat-containing protein At2g01860 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454537 PE=4 SV=1)

HSP 1 Score: 988.0 bits (2553), Expect = 1.4e-284
Identity = 501/501 (100.00%), Postives = 501/501 (100.00%), Query Frame = 0

Query: 1   MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL 60
           MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL
Sbjct: 1   MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL 60

Query: 61  KKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAI 120
           KKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAI
Sbjct: 61  KKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAI 120

Query: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180
           TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD
Sbjct: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180

Query: 181 FLIGLARAIRDLKPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240
           FLIGLARAIRDLKPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ
Sbjct: 181 FLIGLARAIRDLKPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240

Query: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300
           PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL
Sbjct: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300

Query: 301 LVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIKVS 360
           LVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIKVS
Sbjct: 301 LVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIKVS 360

Query: 361 TRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANSPFDL 420
           TRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANSPFDL
Sbjct: 361 TRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANSPFDL 420

Query: 421 PAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE 480
           PAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE
Sbjct: 421 PAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE 480

Query: 481 AENAGYVMDKQITSMLLQAKR 502
           AENAGYVMDKQITSMLLQAKR
Sbjct: 481 AENAGYVMDKQITSMLLQAKR 501

BLAST of CmoCh12G006210 vs. ExPASy TrEMBL
Match: A0A6J1KK31 (pentatricopeptide repeat-containing protein At2g01860 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111495984 PE=4 SV=1)

HSP 1 Score: 959.9 bits (2480), Expect = 4.1e-276
Identity = 483/501 (96.41%), Postives = 494/501 (98.60%), Query Frame = 0

Query: 1   MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL 60
           MDSLFSTT +SSILVKRNGGISCQIP+AHF TNS+RRPPKNLLYPRRTKLPPDPGVNQFL
Sbjct: 1   MDSLFSTTAVSSILVKRNGGISCQIPMAHFLTNSKRRPPKNLLYPRRTKLPPDPGVNQFL 60

Query: 61  KKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAI 120
           KKRTS P PDTS+PDLI SEKIGLPEEELDE+EETAADNYFANDDNDSD+VWD EEIEAI
Sbjct: 61  KKRTSDPHPDTSYPDLIPSEKIGLPEEELDELEETAADNYFANDDNDSDIVWDPEEIEAI 120

Query: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180
           TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD
Sbjct: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180

Query: 181 FLIGLARAIRDLKPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240
           FLIGLARAIRDL+PEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ
Sbjct: 181 FLIGLARAIRDLQPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240

Query: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300
           PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL
Sbjct: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300

Query: 301 LVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIKVS 360
           LVAAKNGKRMLDPSV+VKLILEIGKNPDKNMLVLALLDELGQREALNL+QQDTSAIIKVS
Sbjct: 301 LVAAKNGKRMLDPSVHVKLILEIGKNPDKNMLVLALLDELGQREALNLSQQDTSAIIKVS 360

Query: 361 TRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANSPFDL 420
           TRLGKFEIAE+LYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAAN PFDL
Sbjct: 361 TRLGKFEIAEKLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANCPFDL 420

Query: 421 PAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE 480
           PAYSVV+KLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE
Sbjct: 421 PAYSVVIKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE 480

Query: 481 AENAGYVMDKQITSMLLQAKR 502
           AENAGYVMDKQITSMLLQAKR
Sbjct: 481 AENAGYVMDKQITSMLLQAKR 501

BLAST of CmoCh12G006210 vs. ExPASy TrEMBL
Match: A0A6J1GIR9 (pentatricopeptide repeat-containing protein At2g01860 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454537 PE=4 SV=1)

HSP 1 Score: 913.7 bits (2360), Expect = 3.4e-262
Identity = 470/501 (93.81%), Postives = 470/501 (93.81%), Query Frame = 0

Query: 1   MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL 60
           MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL
Sbjct: 1   MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL 60

Query: 61  KKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAI 120
           KKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAI
Sbjct: 61  KKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAI 120

Query: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180
           TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD
Sbjct: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180

Query: 181 FLIGLARAIRDLKPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240
           FLIGLARAIRDLKPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ
Sbjct: 181 FLIGLARAIRDLKPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240

Query: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300
           PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL
Sbjct: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300

Query: 301 LVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIKVS 360
           LVAAKN                               DELGQREALNLNQQDTSAIIKVS
Sbjct: 301 LVAAKN-------------------------------DELGQREALNLNQQDTSAIIKVS 360

Query: 361 TRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANSPFDL 420
           TRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANSPFDL
Sbjct: 361 TRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANSPFDL 420

Query: 421 PAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE 480
           PAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE
Sbjct: 421 PAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE 470

Query: 481 AENAGYVMDKQITSMLLQAKR 502
           AENAGYVMDKQITSMLLQAKR
Sbjct: 481 AENAGYVMDKQITSMLLQAKR 470

BLAST of CmoCh12G006210 vs. ExPASy TrEMBL
Match: A0A6J1KI41 (pentatricopeptide repeat-containing protein At2g01860 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111495984 PE=4 SV=1)

HSP 1 Score: 887.5 bits (2292), Expect = 2.6e-254
Identity = 453/501 (90.42%), Postives = 463/501 (92.42%), Query Frame = 0

Query: 1   MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL 60
           MDSLFSTT +SSILVKRNGGISCQIP+AHF TNS+RRPPKNLLYPRRTKLPPDPGVNQFL
Sbjct: 1   MDSLFSTTAVSSILVKRNGGISCQIPMAHFLTNSKRRPPKNLLYPRRTKLPPDPGVNQFL 60

Query: 61  KKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAI 120
           KKRTS P PDTS+PDLI SEKIGLPEEELDE+EETAADNYFANDDNDSD+VWD EEIEAI
Sbjct: 61  KKRTSDPHPDTSYPDLIPSEKIGLPEEELDELEETAADNYFANDDNDSDIVWDPEEIEAI 120

Query: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180
           TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD
Sbjct: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180

Query: 181 FLIGLARAIRDLKPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240
           FLIGLARAIRDL+PEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ
Sbjct: 181 FLIGLARAIRDLQPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240

Query: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300
           PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL
Sbjct: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300

Query: 301 LVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIKVS 360
           LVAAKN                               DELGQREALNL+QQDTSAIIKVS
Sbjct: 301 LVAAKN-------------------------------DELGQREALNLSQQDTSAIIKVS 360

Query: 361 TRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANSPFDL 420
           TRLGKFEIAE+LYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAAN PFDL
Sbjct: 361 TRLGKFEIAEKLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANCPFDL 420

Query: 421 PAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE 480
           PAYSVV+KLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE
Sbjct: 421 PAYSVVIKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE 470

Query: 481 AENAGYVMDKQITSMLLQAKR 502
           AENAGYVMDKQITSMLLQAKR
Sbjct: 481 AENAGYVMDKQITSMLLQAKR 470

BLAST of CmoCh12G006210 vs. ExPASy TrEMBL
Match: A0A6J1DI37 (pentatricopeptide repeat-containing protein At2g01860 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020698 PE=4 SV=1)

HSP 1 Score: 805.1 bits (2078), Expect = 1.7e-229
Identity = 406/498 (81.53%), Postives = 445/498 (89.36%), Query Frame = 0

Query: 1   MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL 60
           MD +FS++ +SSI+VK NGGISCQI +A F  N+RRR PKNLL PRRTKLPPDPGVNQFL
Sbjct: 1   MDCIFSSSIVSSIMVKGNGGISCQISMARFMANARRRLPKNLLNPRRTKLPPDPGVNQFL 60

Query: 61  KKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAI 120
           K  TSG  P  SF D  SSEKI  PEEE D+ EE   +NYF  DD D +++WDS+EIEAI
Sbjct: 61  KNTTSGSGP--SFTDFTSSEKIEFPEEEHDDHEEADTENYFV-DDKDGEIIWDSDEIEAI 120

Query: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180
           +SLF+GRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIR RT V SRA +SKQVYKRPD
Sbjct: 121 SSLFQGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRARTGVPSRASLSKQVYKRPD 180

Query: 181 FLIGLARAIRDLKPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240
           FLIGLARAIRDL  EENVSKVLNRWAPFL KGSLSLTI+ELGHMGLADRAL++FCW QEQ
Sbjct: 181 FLIGLARAIRDLSREENVSKVLNRWAPFLLKGSLSLTIRELGHMGLADRALQSFCWAQEQ 240

Query: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300
           PRL+PDDRVLASTVEVL+RNHELK+P NL+EFT+LASRGVLEAM+RGFIKGG L+LAWKL
Sbjct: 241 PRLFPDDRVLASTVEVLSRNHELKVPLNLEEFTRLASRGVLEAMIRGFIKGGSLNLAWKL 300

Query: 301 LVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIKVS 360
           LV AK G RMLDPSVYVKLILE+GKNPDKNMLVL LLDELGQREAL LNQQDT+AI+KV 
Sbjct: 301 LVVAKKGNRMLDPSVYVKLILELGKNPDKNMLVLTLLDELGQREALKLNQQDTTAIMKVC 360

Query: 361 TRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANSPFDL 420
           TRLGKFEIAERLY WYVES HEPSVVMYTAL+H+RYSE+KYREALSVVWEMEAAN PFDL
Sbjct: 361 TRLGKFEIAERLYGWYVESVHEPSVVMYTALIHSRYSEKKYREALSVVWEMEAANCPFDL 420

Query: 421 PAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE 480
           PAY+VV+KLFVALGDLSRA RYFAKLKEAGF PTY IYRNLITIYL +GRLAKCKEIYKE
Sbjct: 421 PAYNVVIKLFVALGDLSRAARYFAKLKEAGFAPTYDIYRNLITIYLVSGRLAKCKEIYKE 480

Query: 481 AENAGYVMDKQITSMLLQ 499
           A+NAG+++DKQITS LLQ
Sbjct: 481 AKNAGFIIDKQITSRLLQ 495

BLAST of CmoCh12G006210 vs. TAIR 10
Match: AT2G01860.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 482.3 bits (1240), Expect = 4.9e-136
Identity = 262/474 (55.27%), Postives = 347/474 (73.21%), Query Frame = 0

Query: 31  QTNSRRRPPKNLLYPRRTKLPPDPGVNQFLKKRTSGPQPDTSFPDLISSEKIGLPEEELD 90
           Q N  ++  KNL  PRRTKLPPD GVN FL+K    P                + +++ +
Sbjct: 34  QRNHSKKLTKNLRNPRRTKLPPDFGVNLFLRKPKIEPL---------------VIDDDDE 93

Query: 91  EIEETAADNYFANDDNDSDVVWDSEEIEAITSLFRGRIPQKPGKLNRERPLPLPLPHKLR 150
           +++E+       NDD+D+ VVW+ EEIEAI+SLF+ RIPQKP K +R RPLPLP PHKLR
Sbjct: 94  QVQES------VNDDDDA-VVWEPEEIEAISSLFQKRIPQKPDKPSRVRPLPLPQPHKLR 153

Query: 151 PPGLPNPKIRPRTAVSSRAL--MSKQVYKRPDFLIGLARAIRDL-KPEENVSKVLNRWAP 210
           P GLP PK   +  + S AL  +SKQVYK P FLIGLAR I+ L   + +VS VLN+W  
Sbjct: 154 PLGLPTPK---KNIIRSPALSSVSKQVYKDPSFLIGLAREIKSLPSSDADVSLVLNKWVS 213

Query: 211 FLQKGSLSLTIKELGHMGLADRALKTFCWVQEQPRLYPDDRVLASTVEVLARNHELKIPF 270
           FL+KGSLS TI+ELGHMGL +RAL+T+ W ++   L PD+R+LAST++VLA++HELK+  
Sbjct: 214 FLRKGSLSTTIRELGHMGLPERALQTYHWAEKHSHLVPDNRILASTIQVLAKHHELKL-- 273

Query: 271 NLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKLLVAAKNGKRMLDPSVYVKLILEIGKNP 330
            L     LAS+ V+EAM++G I+GG L+LA KL++ +K+  R+LD SVYVK+ILEI KNP
Sbjct: 274 -LKFDNSLASKNVIEAMIKGCIEGGWLNLARKLILISKSNNRILDSSVYVKMILEIAKNP 333

Query: 331 DKNMLVLALLDELGQREALNLNQQDTSAIIKVSTRLGKFEIAERLYSWYVESGHEPSVVM 390
           DK  LV+ALL+EL +RE L L+QQD ++I+K+  +LG+FE+ E L+ W+  S  EPSVVM
Sbjct: 334 DKYHLVVALLEELKKREDLKLSQQDCTSIMKICVKLGEFELVESLFDWFKASNREPSVVM 393

Query: 391 YTALVHNRYSERKYREALSVVWEMEAANSPFDLPAYSVVMKLFVALGDLSRAVRYFAKLK 450
           YT ++H+RYSE+KYREA+SVVWEME +N   DLPAY VV+KLFVAL DL RA+RY++KLK
Sbjct: 394 YTTMIHSRYSEQKYREAMSVVWEMEESNCLLDLPAYRVVIKLFVALDDLGRAMRYYSKLK 453

Query: 451 EAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKEAENAGYVMDKQITSMLLQAKR 502
           EAGF+PTY IYR++I++Y A+GRL KCKEI KE E+AG  +DK  +  LLQ ++
Sbjct: 454 EAGFSPTYDIYRDMISVYTASGRLTKCKEICKEVEDAGLRLDKDTSFRLLQLEK 479

BLAST of CmoCh12G006210 vs. TAIR 10
Match: AT1G74850.1 (plastid transcriptionally active 2 )

HSP 1 Score: 77.8 bits (190), Expect = 2.8e-14
Identity = 68/322 (21.12%), Postives = 146/322 (45.34%), Query Frame = 0

Query: 185 LARAIRDLKPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQPRLY 244
           L   +  L P  ++++ L+ +   L     +L  KE    G   R+L+ F ++Q Q    
Sbjct: 79  LINKLSSLPPRGSIARCLDIFKNKLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCK 138

Query: 245 PDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGV------LEAMMRGFIKGGRLSLAW 304
           P++ +    + +L R  E  +   L+ F ++ S+GV        A++  + + GR   + 
Sbjct: 139 PNEHIYTIMISLLGR--EGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSL 198

Query: 305 KLLVAAKNGKRMLDPSV--YVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAI 364
           +LL   KN K  + PS+  Y  +I    +       +L L  E+ + E +  +    + +
Sbjct: 199 ELLDRMKNEK--ISPSILTYNTVINACARGGLDWEGLLGLFAEM-RHEGIQPDIVTYNTL 258

Query: 365 IKVSTRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANS 424
           +      G  + AE ++    + G  P +  Y+ LV      R+  +   ++ EM +  S
Sbjct: 259 LSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGS 318

Query: 425 PFDLPAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKE 484
             D+ +Y+V+++ +   G +  A+  F +++ AG TP    Y  L+ ++  +GR    ++
Sbjct: 319 LPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQ 378

Query: 485 IYKEAENAGYVMDKQITSMLLQ 499
           ++ E +++    D    ++L++
Sbjct: 379 LFLEMKSSNTDPDAATYNILIE 395

BLAST of CmoCh12G006210 vs. TAIR 10
Match: AT2G18940.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-11
Identity = 75/310 (24.19%), Postives = 127/310 (40.97%), Query Frame = 0

Query: 193 KPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWV---QEQPRLYPDDRV 252
           +P   +S+  +     L +  L   +K L   G  +RA+  F W+        L  D +V
Sbjct: 118 QPLTGLSRFFDSVKSELLRTDLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHQV 177

Query: 253 LASTVEVLARNHEL--------KIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKLL 312
           +   V +L R  +         KIP  L E+  L        ++  + + G+   A  L 
Sbjct: 178 IEIFVRILGRESQYSVAAKLLDKIP--LQEY--LLDVRAYTTILHAYSRTGKYEKAIDLF 237

Query: 313 VAAKNGKRMLDPS---VYVKLILEI-GKNPDKNMLVLALLDELGQREALNLNQQDTSAII 372
              K     + PS   V   +IL++ GK       +L +LDE+ + + L  ++   S ++
Sbjct: 238 ERMKE----MGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEM-RSKGLKFDEFTCSTVL 297

Query: 373 KVSTRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANSP 432
               R G    A+  ++     G+EP  V Y AL+        Y EALSV+ EME  + P
Sbjct: 298 SACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCP 357

Query: 433 FDLPAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEI 488
            D   Y+ ++  +V  G    A      + + G  P    Y  +I  Y  AG+  +  ++
Sbjct: 358 ADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKL 417

BLAST of CmoCh12G006210 vs. TAIR 10
Match: AT5G13770.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 68.6 bits (166), Expect = 1.7e-11
Identity = 60/237 (25.32%), Postives = 111/237 (46.84%), Query Frame = 0

Query: 269 LDEFTKLASRGVLEA------MMRGFIKGGRLSLAWKLLVAAKNGKRMLDPSVYVKLILE 328
           L+   ++  +G+ E+      ++R F +   + +  KL   A   K + DP + +K++L 
Sbjct: 268 LEVLEEMKDKGIPESSELYSMLIRAFAEAREVVITEKLFKEAGGKKLLKDPEMCLKVVLM 327

Query: 329 IGK--NPDKNMLVLALLDELGQREALNLNQQDTSAIIKVSTRLGKFEIAERLYSWYVESG 388
             +  N +  + V+A +    ++  L +      AI+   ++   F  A ++Y W ++  
Sbjct: 328 YVREGNMETTLEVVAAM----RKAELKVTDCILCAIVNGFSKQRGFAEAVKVYEWAMKEE 387

Query: 389 HEPSVVMYTALVHNRYSERKYREALSVVWEMEAANSPFDLPAYSVVMKLFVALGDLSRAV 448
            E   V Y   ++      KY +A  +  EM        + AYS +M ++     LS AV
Sbjct: 388 CEAGQVTYAIAINAYCRLEKYNKAEMLFDEMVKKGFDKCVVAYSNIMDMYGKTRRLSDAV 447

Query: 449 RYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKEAENAGYVMDK-QITSML 497
           R  AK+K+ G  P   IY +LI ++  A  L + ++I+KE + A  + DK   TSM+
Sbjct: 448 RLMAKMKQRGCKPNIWIYNSLIDMHGRAMDLRRAEKIWKEMKRAKVLPDKVSYTSMI 500

BLAST of CmoCh12G006210 vs. TAIR 10
Match: AT5G25630.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 2.4e-10
Identity = 35/122 (28.69%), Postives = 62/122 (50.82%), Query Frame = 0

Query: 356 IIKVSTRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAAN 415
           ++ V    G+   A+ ++    E+GH PS++ YT L+     +++Y    S+V E+E + 
Sbjct: 51  LMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSG 110

Query: 416 SPFDLPAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCK 475
           +  D   ++ V+  F   G++  AV+   K+KE G  PT   Y  LI  Y  AG+  +  
Sbjct: 111 TKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSS 170

Query: 476 EI 478
           E+
Sbjct: 171 EL 172

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q5XET46.9e-13555.27Pentatricopeptide repeat-containing protein At2g01860 OS=Arabidopsis thaliana OX... [more]
Q9S7Q23.9e-1321.12Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidop... [more]
O646241.8e-1024.19Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidop... [more]
Q66GP42.4e-1025.32Pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Arabidop... [more]
Q8GZ633.4e-0928.69Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
A0A6J1GIP21.4e-284100.00pentatricopeptide repeat-containing protein At2g01860 isoform X1 OS=Cucurbita mo... [more]
A0A6J1KK314.1e-27696.41pentatricopeptide repeat-containing protein At2g01860 isoform X1 OS=Cucurbita ma... [more]
A0A6J1GIR93.4e-26293.81pentatricopeptide repeat-containing protein At2g01860 isoform X2 OS=Cucurbita mo... [more]
A0A6J1KI412.6e-25490.42pentatricopeptide repeat-containing protein At2g01860 isoform X2 OS=Cucurbita ma... [more]
A0A6J1DI371.7e-22981.53pentatricopeptide repeat-containing protein At2g01860 isoform X1 OS=Momordica ch... [more]
Match NameE-valueIdentityDescription
AT2G01860.14.9e-13655.27Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G74850.12.8e-1421.12plastid transcriptionally active 2 [more]
AT2G18940.11.3e-1124.19Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G13770.11.7e-1125.32Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT5G25630.12.4e-1028.69Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 321..501
e-value: 1.6E-23
score: 85.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 182..308
e-value: 1.5E-6
score: 29.9
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 407..465
e-value: 1.1E-4
score: 22.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 419..453
score: 9.832344
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..161
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..76
NoneNo IPR availablePANTHERPTHR46128MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1coord: 86..476
NoneNo IPR availablePANTHERPTHR46128:SF179TETRATRICOPEPTIDE REPEAT-LIKE SUPERFAMILY PROTEINcoord: 86..476
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 362..486

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G006210.1CmoCh12G006210.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding