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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCTGAAGCTTCTCTTCAACTTCACAGGGACCATGCTCATGGAGCTGAAGCTGAAGCTCAAGAGCTCATGCAAAACTATGACAAAAATGCTGATTCAAGCCTCTCCAAGGAGGAGCTAAGTGCAGCCATCCACCACAACCAAGCTAAGAACCCAGGATCACACAATCCAGAAGCCAAGAAGAAGGATGTTGCACCCAAAGCTCAGAAGGTGCCTGCTAAGGCTGCCGAAGAGAAGGGGGCGAGTATGAAGCTTAGTAGGAGCCAAATCAAGGAGATATTCATGGAGCATGATATCGATGGTGATGGGTACCTCAGTGTTAGTGAGTTAACAAAGGCTTTTAGTTTCTTTGGTTCTATCATTCCACTCTACAAAGCTCATTATGGTTTAGCTTATGCTGATGCTGATGGAGATGGGCTTATTAGTGAGGAGGAGCTTGAAAAACTTGTTGATTATGCTGAGAGAACCAACAAAAAGAAGAGAGGGTTTTAA mRNA sequence ATGGCTGAAGCTTCTCTTCAACTTCACAGGGACCATGCTCATGGAGCTGAAGCTGAAGCTCAAGAGCTCATGCAAAACTATGACAAAAATGCTGATTCAAGCCTCTCCAAGGAGGAGCTAAGTGCAGCCATCCACCACAACCAAGCTAAGAACCCAGGATCACACAATCCAGAAGCCAAGAAGAAGGATGTTGCACCCAAAGCTCAGAAGGTGCCTGCTAAGGCTGCCGAAGAGAAGGGGGCGAGTATGAAGCTTAGTAGGAGCCAAATCAAGGAGATATTCATGGAGCATGATATCGATGGTGATGGGTACCTCAGTGTTAGTGAGTTAACAAAGGCTTTTAGTTTCTTTGGTTCTATCATTCCACTCTACAAAGCTCATTATGGTTTAGCTTATGCTGATGCTGATGGAGATGGGCTTATTAGTGAGGAGGAGCTTGAAAAACTTGTTGATTATGCTGAGAGAACCAACAAAAAGAAGAGAGGGTTTTAA Coding sequence (CDS) ATGGCTGAAGCTTCTCTTCAACTTCACAGGGACCATGCTCATGGAGCTGAAGCTGAAGCTCAAGAGCTCATGCAAAACTATGACAAAAATGCTGATTCAAGCCTCTCCAAGGAGGAGCTAAGTGCAGCCATCCACCACAACCAAGCTAAGAACCCAGGATCACACAATCCAGAAGCCAAGAAGAAGGATGTTGCACCCAAAGCTCAGAAGGTGCCTGCTAAGGCTGCCGAAGAGAAGGGGGCGAGTATGAAGCTTAGTAGGAGCCAAATCAAGGAGATATTCATGGAGCATGATATCGATGGTGATGGGTACCTCAGTGTTAGTGAGTTAACAAAGGCTTTTAGTTTCTTTGGTTCTATCATTCCACTCTACAAAGCTCATTATGGTTTAGCTTATGCTGATGCTGATGGAGATGGGCTTATTAGTGAGGAGGAGCTTGAAAAACTTGTTGATTATGCTGAGAGAACCAACAAAAAGAAGAGAGGGTTTTAA Protein sequence MAEASLQLHRDHAHGAEAEAQELMQNYDKNADSSLSKEELSAAIHHNQAKNPGSHNPEAKKKDVAPKAQKVPAKAAEEKGASMKLSRSQIKEIFMEHDIDGDGYLSVSELTKAFSFFGSIIPLYKAHYGLAYADADGDGLISEEELEKLVDYAERTNKKKRGF
Homology
BLAST of CmoCh12G004810 vs. ExPASy TrEMBL
Match: A0A6J1GK16 (calmodulin-like OS=Cucurbita moschata OX=3662 GN=LOC111454616 PE=4 SV=1) HSP 1 Score: 311.6 bits (797), Expect = 1.9e-81 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
Query: 1 MAEASLQLHRDHAHGAEAEAQELMQNYDKNADSSLSKEELSAAIHHNQAKNPGSHNPEAK 60
MAEASLQLHRDHAHGAEAEAQELMQNYDKNADSSLSKEELSAAIHHNQAKNPGSHNPEAK
Sbjct: 1 MAEASLQLHRDHAHGAEAEAQELMQNYDKNADSSLSKEELSAAIHHNQAKNPGSHNPEAK 60
Query: 61 KKDVAPKAQKVPAKAAEEKGASMKLSRSQIKEIFMEHDIDGDGYLSVSELTKAFSFFGSI 120
KKDVAPKAQKVPAKAAEEKGASMKLSRSQIKEIFMEHDIDGDGYLSVSELTKAFSFFGSI
Sbjct: 61 KKDVAPKAQKVPAKAAEEKGASMKLSRSQIKEIFMEHDIDGDGYLSVSELTKAFSFFGSI 120
Query: 121 IPLYKAHYGLAYADADGDGLISEEELEKLVDYAERTNKKKRGF 164
IPLYKAHYGLAYADADGDGLISEEELEKLVDYAERTNKKKRGF
Sbjct: 121 IPLYKAHYGLAYADADGDGLISEEELEKLVDYAERTNKKKRGF 163
BLAST of CmoCh12G004810 vs. ExPASy TrEMBL
Match: A0A6J1KUW2 (calmodulin-like OS=Cucurbita maxima OX=3661 GN=LOC111496626 PE=4 SV=1) HSP 1 Score: 302.0 bits (772), Expect = 1.5e-78 Identity = 158/163 (96.93%), Postives = 160/163 (98.16%), Query Frame = 0
Query: 1 MAEASLQLHRDHAHGAEAEAQELMQNYDKNADSSLSKEELSAAIHHNQAKNPGSHNPEAK 60
M+EASLQLHRD AHGAEAEAQE +QNYDKNADSSLSKEELSAAIHHNQAKNPGSH PEAK
Sbjct: 1 MSEASLQLHRDQAHGAEAEAQEFIQNYDKNADSSLSKEELSAAIHHNQAKNPGSHKPEAK 60
Query: 61 KKDVAPKAQKVPAKAAEEKGASMKLSRSQIKEIFMEHDIDGDGYLSVSELTKAFSFFGSI 120
KKDVAPKAQKVPAKAAEEKGASMKLSRSQIKEIFMEHDIDGDGYLSVSELTKAFSFFGSI
Sbjct: 61 KKDVAPKAQKVPAKAAEEKGASMKLSRSQIKEIFMEHDIDGDGYLSVSELTKAFSFFGSI 120
Query: 121 IPLYKAHYGLAYADADGDGLISEEELEKLVDYAERTNKKKRGF 164
IPLYKAHYGLAYADADGDGLISEEELEKLVDYAERTNKKKRGF
Sbjct: 121 IPLYKAHYGLAYADADGDGLISEEELEKLVDYAERTNKKKRGF 163
BLAST of CmoCh12G004810 vs. ExPASy TrEMBL
Match: A0A6J1CSH1 (probable calcium-binding protein CML15 OS=Momordica charantia OX=3673 GN=LOC111013915 PE=4 SV=1) HSP 1 Score: 180.3 bits (456), Expect = 6.7e-42 Identity = 103/162 (63.58%), Postives = 121/162 (74.69%), Query Frame = 0
Query: 1 MAEASLQLHRDHAHGAEAEAQELMQNYDKNADSSLSKEEL-SAAIHHNQAKNPGSHNPEA 60
M+ SLQLHR +H EAEA E++Q YDKN DS ++KEE+ A++H
Sbjct: 1 MSSDSLQLHRGQSHVNEAEASEMIQKYDKNGDSIITKEEIVDKAVNH------------- 60
Query: 61 KKKDVAPKAQKVPAKAAEEKGA-SMKLSRSQIKEIFMEHDIDGDGYLSVSELTKAFSFFG 120
K +V PKAQKVPA+ A EK A +K SRSQIKEIFMEHDIDGDG LSVSEL KAFSF G
Sbjct: 61 -KANVVPKAQKVPARVANEKKAPKIKFSRSQIKEIFMEHDIDGDGCLSVSELIKAFSFLG 120
Query: 121 SIIPLYKAHYGLAYADADGDGLISEEELEKLVDYAERTNKKK 161
S+IPLYKAHYGLA+AD DGDGLISEEEL+KLVDYAE+ + +K
Sbjct: 121 SVIPLYKAHYGLAFADDDGDGLISEEELDKLVDYAEKGSDRK 148
BLAST of CmoCh12G004810 vs. ExPASy TrEMBL
Match: A0A6J1GK54 (calmodulin-like OS=Cucurbita moschata OX=3662 GN=LOC111454617 PE=4 SV=1) HSP 1 Score: 174.1 bits (440), Expect = 4.8e-40 Identity = 92/153 (60.13%), Postives = 117/153 (76.47%), Query Frame = 0
Query: 8 LHRDHAHGAEAEAQELMQNYDKNADSSLSKEELSAAIHHNQAKNPGSHNPEAKKKDVAPK 67
+H D + +EA+A L++ YDKN DS L+K+EL+A I ++ G KD+ K
Sbjct: 8 VHHDRPYMSEADANNLIKKYDKNGDSILTKDELTAMILEQASQQQG------PPKDIVCK 67
Query: 68 AQKVPAKAAEEKGASMKLSRSQIKEIFMEHDIDGDGYLSVSELTKAFSFFGSIIPLYKAH 127
+K PAK E+KG M+LSRS+I++IF+EHDIDGDGYL+VSELTKAFSF GS++PLYKAH
Sbjct: 68 PKKKPAKVPEDKGLHMRLSRSEIRDIFLEHDIDGDGYLNVSELTKAFSFIGSMLPLYKAH 127
Query: 128 YGLAYADADGDGLISEEELEKLVDYAERTNKKK 161
YGL YADADGDG ISEEELEKLVDYAER +++K
Sbjct: 128 YGLNYADADGDGRISEEELEKLVDYAERVSRRK 154
BLAST of CmoCh12G004810 vs. ExPASy TrEMBL
Match: A0A6J1KRR4 (calmodulin-A-like OS=Cucurbita maxima OX=3661 GN=LOC111496627 PE=4 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 3.1e-39 Identity = 92/153 (60.13%), Postives = 116/153 (75.82%), Query Frame = 0
Query: 8 LHRDHAHGAEAEAQELMQNYDKNADSSLSKEELSAAIHHNQAKNPGSHNPEAKKKDVAPK 67
+H D + +EA+A L++ YDKN DS L+K+EL+A I ++ G KDV K
Sbjct: 8 VHHDQPYMSEADANNLIKKYDKNGDSILTKDELTAMILEQASQQQG------HPKDVVCK 67
Query: 68 AQKVPAKAAEEKGASMKLSRSQIKEIFMEHDIDGDGYLSVSELTKAFSFFGSIIPLYKAH 127
+K PAK E+KG M+LSRS+I++IF+EHDIDGDGYL+VSELTKAFSF GS++PLYKAH
Sbjct: 68 PKKNPAKVPEDKGLHMRLSRSEIRDIFLEHDIDGDGYLNVSELTKAFSFIGSMLPLYKAH 127
Query: 128 YGLAYADADGDGLISEEELEKLVDYAERTNKKK 161
YGL YADADGDG ISEEEL KLVDYAER +++K
Sbjct: 128 YGLNYADADGDGRISEEELGKLVDYAERVSRRK 154
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1GK16 | 1.9e-81 | 100.00 | calmodulin-like OS=Cucurbita moschata OX=3662 GN=LOC111454616 PE=4 SV=1 | [more] |
| A0A6J1KUW2 | 1.5e-78 | 96.93 | calmodulin-like OS=Cucurbita maxima OX=3661 GN=LOC111496626 PE=4 SV=1 | [more] |
| A0A6J1CSH1 | 6.7e-42 | 63.58 | probable calcium-binding protein CML15 OS=Momordica charantia OX=3673 GN=LOC1110... | [more] |
| A0A6J1GK54 | 4.8e-40 | 60.13 | calmodulin-like OS=Cucurbita moschata OX=3662 GN=LOC111454617 PE=4 SV=1 | [more] |
| A0A6J1KRR4 | 3.1e-39 | 60.13 | calmodulin-A-like OS=Cucurbita maxima OX=3661 GN=LOC111496627 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 6..26 |
| None | No IPR available | GENE3D | 1.10.238.10 | | coord: 13..160
e-value: 1.8E-17
score: 65.8 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 55..74 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 26..54 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..18 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..83 |
| None | No IPR available | PANTHER | PTHR10891:SF911 | SUBFAMILY NOT NAMED | coord: 77..155 |
| None | No IPR available | PANTHER | PTHR10891 | EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN | coord: 77..155 |
| IPR002048 | EF-hand domain | SMART | SM00054 | efh_1 | coord: 89..117
e-value: 0.067
score: 22.3
coord: 19..47
e-value: 1.7
score: 15.9 |
| IPR002048 | EF-hand domain | PFAM | PF13499 | EF-hand_7 | coord: 88..149
e-value: 1.7E-8
score: 34.8 |
| IPR002048 | EF-hand domain | PROSITE | PS50222 | EF_HAND_2 | coord: 85..120
score: 13.760229 |
| IPR002048 | EF-hand domain | PROSITE | PS50222 | EF_HAND_2 | coord: 15..50
score: 10.691735 |
| IPR018247 | EF-Hand 1, calcium-binding site | PROSITE | PS00018 | EF_HAND_1 | coord: 98..110 |
| IPR018247 | EF-Hand 1, calcium-binding site | PROSITE | PS00018 | EF_HAND_1 | coord: 134..146 |
| IPR011992 | EF-hand domain pair | SUPERFAMILY | 47473 | EF-hand | coord: 17..150 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005509 |
calcium ion binding |
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