CmoCh12G001710 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G001710
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr12: 1133639 .. 1134251 (+)
RNA-Seq ExpressionCmoCh12G001710
SyntenyCmoCh12G001710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATCAACCGGAGCAGCACCCGCCAGTTCGCCGTCGGAAGCAGAGTGCTGCATGTGCGGAGATTTCGGCTTCTCCGACGAGCTTTTCCGGTGCAAAATCTGCCAATTCAGATCCCAACACAGGCAATTTCCTTCAAATTCTTTGTGTTTGTTCTTAATTGGGTTCATGATTTTAATACCCATTTCTTGTTCTTGCTGTTCGTCTCAGGTACTGTAGCAATTTGTACCCAAAAGCCGATTGTTACAGAATATGCAATTGGTGTCTAACTCAAAAGGAGGAATCCAAAGCCAAATCCCCAAATTCTTCCAATTCTTCTTCCTTAACCACTCGAGATGATCACTCCTCGATCAAAACCCCCCGAAACAAGGATCAAATTCGCACTTTTCTACCCCTACAAACCAGACCCATCAAAAAACAGAGGTCGCCGGAAGCTTCTGAACGTCCACAACCACCGCCACCGCCGCCGCCTCGGAGAAAACCAATCGCCGTGGAGGACAATCTCCGGCGGACGAGATCGGAGGAGATTTCTCACCGGAGTGGAATCCAACGGCCGGTGATTTTCCGGAACAAGGTGAGAAGGTACAAACTTCTTGACGAGGTTTCCAGCTGA

mRNA sequence

ATGACATCAACCGGAGCAGCACCCGCCAGTTCGCCGTCGGAAGCAGAGTGCTGCATGTGCGGAGATTTCGGCTTCTCCGACGAGCTTTTCCGGTGCAAAATCTGCCAATTCAGATCCCAACACAGGCAATTTCCTTCAAATTCTTTGTGTTTGTTCTTAATTGGGTACTGTAGCAATTTGTACCCAAAAGCCGATTGTTACAGAATATGCAATTGGTGTCTAACTCAAAAGGAGGAATCCAAAGCCAAATCCCCAAATTCTTCCAATTCTTCTTCCTTAACCACTCGAGATGATCACTCCTCGATCAAAACCCCCCGAAACAAGGATCAAATTCGCACTTTTCTACCCCTACAAACCAGACCCATCAAAAAACAGAGGTCGCCGGAAGCTTCTGAACGTCCACAACCACCGCCACCGCCGCCGCCTCGGAGAAAACCAATCGCCGTGGAGGACAATCTCCGGCGGACGAGATCGGAGGAGATTTCTCACCGGAGTGGAATCCAACGGCCGGTGATTTTCCGGAACAAGGTGAGAAGGTACAAACTTCTTGACGAGGTTTCCAGCTGA

Coding sequence (CDS)

ATGACATCAACCGGAGCAGCACCCGCCAGTTCGCCGTCGGAAGCAGAGTGCTGCATGTGCGGAGATTTCGGCTTCTCCGACGAGCTTTTCCGGTGCAAAATCTGCCAATTCAGATCCCAACACAGGCAATTTCCTTCAAATTCTTTGTGTTTGTTCTTAATTGGGTACTGTAGCAATTTGTACCCAAAAGCCGATTGTTACAGAATATGCAATTGGTGTCTAACTCAAAAGGAGGAATCCAAAGCCAAATCCCCAAATTCTTCCAATTCTTCTTCCTTAACCACTCGAGATGATCACTCCTCGATCAAAACCCCCCGAAACAAGGATCAAATTCGCACTTTTCTACCCCTACAAACCAGACCCATCAAAAAACAGAGGTCGCCGGAAGCTTCTGAACGTCCACAACCACCGCCACCGCCGCCGCCTCGGAGAAAACCAATCGCCGTGGAGGACAATCTCCGGCGGACGAGATCGGAGGAGATTTCTCACCGGAGTGGAATCCAACGGCCGGTGATTTTCCGGAACAAGGTGAGAAGGTACAAACTTCTTGACGAGGTTTCCAGCTGA

Protein sequence

MTSTGAAPASSPSEAECCMCGDFGFSDELFRCKICQFRSQHRQFPSNSLCLFLIGYCSNLYPKADCYRICNWCLTQKEESKAKSPNSSNSSSLTTRDDHSSIKTPRNKDQIRTFLPLQTRPIKKQRSPEASERPQPPPPPPPRRKPIAVEDNLRRTRSEEISHRSGIQRPVIFRNKVRRYKLLDEVSS
Homology
BLAST of CmoCh12G001710 vs. ExPASy TrEMBL
Match: A0A6J1GHL7 (uncharacterized protein LOC111454013 OS=Cucurbita moschata OX=3662 GN=LOC111454013 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 9.9e-90
Identity = 175/188 (93.09%), Postives = 175/188 (93.09%), Query Frame = 0

Query: 1   MTSTGAAPASSPSEAECCMCGDFGFSDELFRCKICQFRSQHRQFPSNSLCLFLIGYCSNL 60
           MTSTGAAPASSPSEAECCMCGDFGFSDELFRCKICQFRSQHR             YCSNL
Sbjct: 1   MTSTGAAPASSPSEAECCMCGDFGFSDELFRCKICQFRSQHR-------------YCSNL 60

Query: 61  YPKADCYRICNWCLTQKEESKAKSPNSSNSSSLTTRDDHSSIKTPRNKDQIRTFLPLQTR 120
           YPKADCYRICNWCLTQKEESKAKSPNSSNSSSLTTRDDHSSIKTPRNKDQIRTFLPLQTR
Sbjct: 61  YPKADCYRICNWCLTQKEESKAKSPNSSNSSSLTTRDDHSSIKTPRNKDQIRTFLPLQTR 120

Query: 121 PIKKQRSPEASERPQPPPPPPPRRKPIAVEDNLRRTRSEEISHRSGIQRPVIFRNKVRRY 180
           PIKKQRSPEASERPQPPPPPPPRRKPIAVEDNLRRTRSEEISHRSGIQRPVIFRNKVRRY
Sbjct: 121 PIKKQRSPEASERPQPPPPPPPRRKPIAVEDNLRRTRSEEISHRSGIQRPVIFRNKVRRY 175

Query: 181 KLLDEVSS 189
           KLLDEVSS
Sbjct: 181 KLLDEVSS 175

BLAST of CmoCh12G001710 vs. ExPASy TrEMBL
Match: A0A6J1KQ08 (uncharacterized protein LOC111496564 OS=Cucurbita maxima OX=3661 GN=LOC111496564 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.6e-84
Identity = 171/189 (90.48%), Postives = 174/189 (92.06%), Query Frame = 0

Query: 1   MTSTGAAPASSPSEAECCMCGDFGFSDELFRCKICQFRSQHRQFPSNSLCLFLIGYCSNL 60
           MTSTGAA ASSPSEAECCMCGDFGFSDELFRCKICQFRSQHR             YCSNL
Sbjct: 1   MTSTGAA-ASSPSEAECCMCGDFGFSDELFRCKICQFRSQHR-------------YCSNL 60

Query: 61  YPKADCYRICNWCLTQKEESKAKSPNSSNSSSLTTRDDHSSIKTPRNKDQIRTFLPLQTR 120
           YPKADCYRICNWCLTQKEESKAKSPNSSNSSSL+TRDD+SSIKTPRNKDQIRTFLPLQTR
Sbjct: 61  YPKADCYRICNWCLTQKEESKAKSPNSSNSSSLSTRDDYSSIKTPRNKDQIRTFLPLQTR 120

Query: 121 PIKKQRSPEASERPQ-PPPPPPPRRKPIAVEDNLRRTRSEEISHRSGIQRPVIFRNKVRR 180
           PIKKQRSPEASERPQ PPPPPPPRRKPIAVE+NLRRTRSEEISHRSGIQRPVIFRNKVRR
Sbjct: 121 PIKKQRSPEASERPQPPPPPPPPRRKPIAVEENLRRTRSEEISHRSGIQRPVIFRNKVRR 175

Query: 181 YKLLDEVSS 189
           YKLLDEVSS
Sbjct: 181 YKLLDEVSS 175

BLAST of CmoCh12G001710 vs. ExPASy TrEMBL
Match: A0A6J1BR47 (uncharacterized protein LOC111005007 OS=Momordica charantia OX=3673 GN=LOC111005007 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.4e-62
Identity = 140/199 (70.35%), Postives = 153/199 (76.88%), Query Frame = 0

Query: 1   MTSTGAAPASSPSE--AECCMCGDFGFSDELFRCKICQFRSQHRQFPSNSLCLFLIGYCS 60
           MTS GAA   S +    ECCMCGDFGFS ELF+CKICQ+RSQHR             YCS
Sbjct: 1   MTSNGAATTKSEASLPLECCMCGDFGFSYELFQCKICQYRSQHR-------------YCS 60

Query: 61  NLYPKADCYRICNWCLTQKEESKAKSPNSSNSS------SLTTRDDHSSIKTPR--NKDQ 120
           NLYPKA+CYRICNWCL+QKEESKAKSPNSSNSS      + + RDD+SSIK PR  NKDQ
Sbjct: 61  NLYPKAECYRICNWCLSQKEESKAKSPNSSNSSTSNKAQNSSGRDDYSSIKKPRNSNKDQ 120

Query: 121 IRTFLPLQTRPIKKQRSPEASERPQPPPPPP-PRRKPIAVEDNLRRTRSEEISHRSGIQR 180
           IRTF   + RPIKKQRSPE    P PPPPPP  RR+P+AV+D LRRTRSEEISHR+GIQR
Sbjct: 121 IRTFQSQENRPIKKQRSPEVLPPPPPPPPPPQARRRPVAVDDTLRRTRSEEISHRTGIQR 180

Query: 181 PVIFRNKVRRYKLLDEVSS 189
           PVIFRNKVRRYKLLDEVSS
Sbjct: 181 PVIFRNKVRRYKLLDEVSS 186

BLAST of CmoCh12G001710 vs. ExPASy TrEMBL
Match: A0A0A0LLR8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G369840 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.9e-49
Identity = 112/178 (62.92%), Postives = 123/178 (69.10%), Query Frame = 0

Query: 11  SPSEAECCMCGDFGFSDELFRCKICQFRSQHRQFPSNSLCLFLIGYCSNLYPKADCYRIC 70
           S S++ECCMCGDFGFS ELF CKICQFRSQHR             YCSNLYPKADCYRIC
Sbjct: 4   SKSQSECCMCGDFGFSFELFHCKICQFRSQHR-------------YCSNLYPKADCYRIC 63

Query: 71  NWCLTQKEESKAKSPNSSNSSSLTTRDDHSSIKTPRNKDQIRTFLPLQTRPIKKQRSPEA 130
           NWCLT  +ES  KSPNSS+S                N DQ   F     +PIKKQ S   
Sbjct: 64  NWCLTLNQESNPKSPNSSSS-------------IINNNDQFPNFRSQLNKPIKKQSSSSL 123

Query: 131 SERPQPPPPPPPRRKPIAVEDNLRRTRSEEISHRSGIQRPVIFRNKVRRYKLLDEVSS 189
              P PPPPPPPRR+ I+V++ LRRTRSEEISHR+GI+RPVIFRNKVRRYKLLDEVSS
Sbjct: 124 VILPPPPPPPPPRRRLISVDEKLRRTRSEEISHRTGIKRPVIFRNKVRRYKLLDEVSS 155

BLAST of CmoCh12G001710 vs. ExPASy TrEMBL
Match: A0A1S3BCA2 (uncharacterized protein LOC103488103 OS=Cucumis melo OX=3656 GN=LOC103488103 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 2.5e-48
Identity = 112/179 (62.57%), Postives = 123/179 (68.72%), Query Frame = 0

Query: 11  SPSEAECCMCGDFGFSDELFRCKICQFRSQHRQFPSNSLCLFLIGYCSNLYPKADCYRIC 70
           S S++ECC CGDFG S ELF CKICQFRSQHR             YCSNLYPKADCYRIC
Sbjct: 4   SKSQSECCTCGDFGLSFELFHCKICQFRSQHR-------------YCSNLYPKADCYRIC 63

Query: 71  NWCLTQKEESKAKSPNSSNSSSLTTRDDHSSIKTPRNKDQIRTFLPLQTRPIKKQRSPE- 130
           NWCLTQ +ES  KSPNSS+S  +             N DQ   F     +PIKKQ S   
Sbjct: 64  NWCLTQNQESNPKSPNSSSSPII------------NNNDQFPNFRSRLNKPIKKQSSSSL 123

Query: 131 ASERPQPPPPPPPRRKPIAVEDNLRRTRSEEISHRSGIQRPVIFRNKVRRYKLLDEVSS 189
               P PPPPPPPRR+ I+V+D LRRTRSEEISHR+GI+RPVIFRNKVRRYKLLDEVSS
Sbjct: 124 VILPPPPPPPPPPRRRLISVDDKLRRTRSEEISHRTGIKRPVIFRNKVRRYKLLDEVSS 157

BLAST of CmoCh12G001710 vs. TAIR 10
Match: AT1G02070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60520.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 2.1e-07
Identity = 37/94 (39.36%), Postives = 50/94 (53.19%), Query Frame = 0

Query: 14  EAECCMCGDFGFSDELFRCKICQFRSQHRQFPSNSLCLFLIGYCSNLYPK-ADCYRICNW 73
           E  CCMCGD GFSD+LF C  C+ R QH              YCSN Y + A+   IC+W
Sbjct: 2   ERVCCMCGDVGFSDKLFSCGHCRCRFQH-------------SYCSNYYGQFAEPTEICDW 61

Query: 74  CLT--QKEESKAKSPNSSN---SSSLTTRDDHSS 102
           C +  +K  + A+   SS+   SSS+   +D S+
Sbjct: 62  CRSDDRKLSNVARHGGSSSKKPSSSVKYENDFSN 82

BLAST of CmoCh12G001710 vs. TAIR 10
Match: AT3G60520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 7.5e-05
Identity = 42/130 (32.31%), Postives = 58/130 (44.62%), Query Frame = 0

Query: 17  CCMCGDFGFSDELFRCKICQFRSQHRQFPSNSLCLFLIGYCSNLY-PKADCYRICNWCLT 76
           CCMCGD GF D+LF C  C  R QH              YCS+ Y  +AD  +IC+WC  
Sbjct: 9   CCMCGDVGFFDKLFHCSKCLNRFQH-------------SYCSSYYKEQADPIKICDWCQC 68

Query: 77  Q-KEESKAKSPNSSNSSSLTTRDDHSSIKTPRNKDQIRTFLPLQTRPIKKQRSPEASERP 136
           + K  + AK   +  SS  + R ++SS      + +I      QT       + +  +  
Sbjct: 69  EAKSRTGAKHGVNGGSSKRSYRSEYSSPHHQIKQQEIN-----QTTSSSIPPAADKGKTG 120

Query: 137 QPPPPPPPRR 145
            P P P  RR
Sbjct: 129 VPSPRPATRR 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GHL79.9e-9093.09uncharacterized protein LOC111454013 OS=Cucurbita moschata OX=3662 GN=LOC1114540... [more]
A0A6J1KQ081.6e-8490.48uncharacterized protein LOC111496564 OS=Cucurbita maxima OX=3661 GN=LOC111496564... [more]
A0A6J1BR471.4e-6270.35uncharacterized protein LOC111005007 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A0A0LLR82.9e-4962.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G369840 PE=4 SV=1[more]
A0A1S3BCA22.5e-4862.57uncharacterized protein LOC103488103 OS=Cucumis melo OX=3656 GN=LOC103488103 PE=... [more]
Match NameE-valueIdentityDescription
AT1G02070.12.1e-0739.36unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G60520.17.5e-0532.31unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..169
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 147..164
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..98
NoneNo IPR availablePANTHERPTHR33779EXPRESSED PROTEINcoord: 5..188
NoneNo IPR availablePANTHERPTHR33779:SF1EXPRESSED PROTEINcoord: 5..188

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G001710.1CmoCh12G001710.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding