CmoCh11G019630 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G019630
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	transcription factor bHLH162-like
Location	Cmo_Chr11: 13501935 .. 13503064 (+)
RNA-Seq Expression	CmoCh11G019630
Synteny	CmoCh11G019630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTCTTCATCGTTCTCTTTATCAAATGGATCGCCATTTCCAGTTCTCGACTTCGTCTTCGTCGGCTGCAAAGATCGAACGGCGAATCGTAGAGAAAAACAGAAGAAATCAGATGAAAACCCTCTGTTCTCAGCTCAATTCCCTTCTCCCAAATCAGGATTCCAAGGTCCTTTCTTATCTCCTTCACATAAAACAGAGCAAAACAGAGCAAAAACAGAGAAAAACAGAGCATCCTCTGTTCTTGAATGAATTTTACATGAAATTAACGAACACCCACGAGCCAAAATCTTGATTTGTTGTGTAATTTTATGCAGGAGATTTCATTAGCATTGCCGGATCAAATCGATGAAGCTGTTAAGTACATAAAAGAGCTGGAGAAGAAAGTGAATTTAGCTAAGGAGAAGAAGGAAAAGCTAGAGGGGAAGAACAAGAGCTCCATGAATATCGAGTCTTCGTCGTCGTCTTCGTCCTCATCGGCTTCACCTCAGCTCAAAATCCATCAATCTGGTCGAAGCTTGGAGATTATTTTAAGCAGTGGATTGGATAATCAGTATCTCTTCTCTGAAACCATTAGCATTCTTCAAGAGGAAGGCGTTGAAGTTGTGAATGCCAGCTTCTCTGTTTCTGGGAGCTCTGTTTTTCAAACATTCCATGCACAAGTATTACCAATTCTCAAGAACTGATATCATATTGATTATGGTTAGTTTGATCTTGTTGTTAATGGGTTTTTGTGGTTTGATCACACAGCTCGAGGGCTCGATGATCGAATTCGAGGCAGCGAAGGTGACGGAGAGATTGAAGCGATTGGTTTACGGATCGAACAGCGACATGGAATTGCAGAAGGAGAAGCAATGGTGGGATGAATTCCCTTCTGATGATTTGGATTATTAATTCCGACAAAAACAGCTCAAGTTCATAAGCATACATTTAAAGACAACAAACTGAAAAGAAAAAGGAGAATAAAGGAGTCTTCAGAGTGTGTTGGTTCCAAATGTGTTGGAGTAAGGAACTAAGTCAATAATACTCCTACTATTTAAACTTACTTTTATGCTTAATGTAAATAGAAAATAAATGAGACGTGAAGATTTGAAATTTCTGCTCTCAAGTTTAATATAGAATACAAGGGTCG

mRNA sequence

TTCTTCTTCATCGTTCTCTTTATCAAATGGATCGCCATTTCCAGTTCTCGACTTCGTCTTCGTCGGCTGCAAAGATCGAACGGCGAATCGTAGAGAAAAACAGAAGAAATCAGATGAAAACCCTCTGTTCTCAGCTCAATTCCCTTCTCCCAAATCAGGATTCCAAGGAGATTTCATTAGCATTGCCGGATCAAATCGATGAAGCTGTTAAGTACATAAAAGAGCTGGAGAAGAAAGTGAATTTAGCTAAGGAGAAGAAGGAAAAGCTAGAGGGGAAGAACAAGAGCTCCATGAATATCGAGTCTTCGTCGTCGTCTTCGTCCTCATCGGCTTCACCTCAGCTCAAAATCCATCAATCTGGTCGAAGCTTGGAGATTATTTTAAGCAGTGGATTGGATAATCAGTATCTCTTCTCTGAAACCATTAGCATTCTTCAAGAGGAAGGCGTTGAAGTTGTGAATGCCAGCTTCTCTGTTTCTGGGAGCTCTGTTTTTCAAACATTCCATGCACAACTCGAGGGCTCGATGATCGAATTCGAGGCAGCGAAGGTGACGGAGAGATTGAAGCGATTGGTTTACGGATCGAACAGCGACATGGAATTGCAGAAGGAGAAGCAATGGTGGGATGAATTCCCTTCTGATGATTTGGATTATTAATTCCGACAAAAACAGCTCAAGTTCATAAGCATACATTTAAAGACAACAAACTGAAAAGAAAAAGGAGAATAAAGGAGTCTTCAGAGTGTGTTGGTTCCAAATGTGTTGGAGTAAGGAACTAAGTCAATAATACTCCTACTATTTAAACTTACTTTTATGCTTAATGTAAATAGAAAATAAATGAGACGTGAAGATTTGAAATTTCTGCTCTCAAGTTTAATATAGAATACAAGGGTCG

Coding sequence (CDS)

ATGGATCGCCATTTCCAGTTCTCGACTTCGTCTTCGTCGGCTGCAAAGATCGAACGGCGAATCGTAGAGAAAAACAGAAGAAATCAGATGAAAACCCTCTGTTCTCAGCTCAATTCCCTTCTCCCAAATCAGGATTCCAAGGAGATTTCATTAGCATTGCCGGATCAAATCGATGAAGCTGTTAAGTACATAAAAGAGCTGGAGAAGAAAGTGAATTTAGCTAAGGAGAAGAAGGAAAAGCTAGAGGGGAAGAACAAGAGCTCCATGAATATCGAGTCTTCGTCGTCGTCTTCGTCCTCATCGGCTTCACCTCAGCTCAAAATCCATCAATCTGGTCGAAGCTTGGAGATTATTTTAAGCAGTGGATTGGATAATCAGTATCTCTTCTCTGAAACCATTAGCATTCTTCAAGAGGAAGGCGTTGAAGTTGTGAATGCCAGCTTCTCTGTTTCTGGGAGCTCTGTTTTTCAAACATTCCATGCACAACTCGAGGGCTCGATGATCGAATTCGAGGCAGCGAAGGTGACGGAGAGATTGAAGCGATTGGTTTACGGATCGAACAGCGACATGGAATTGCAGAAGGAGAAGCAATGGTGGGATGAATTCCCTTCTGATGATTTGGATTATTAA

Protein sequence

MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEAVKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSSSSASPQLKIHQSGRSLEIILSSGLDNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRLVYGSNSDMELQKEKQWWDEFPSDDLDY

Homology

[Close]

BLAST of CmoCh11G019630 vs. ExPASy Swiss-Prot
Match: F4JIJ7 (Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.9e-17
Identity = 68/184 (36.96%), Postives = 113/184 (61.41%), Query Frame = 0


Query: 9   TSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEAVKYIKELE 68
           +++  +  ++R+ VEKNRR QMK+L S+L SLLP+  S E  L LPDQ+DEA  YIK+L+
Sbjct: 6   SNTGQSRSVDRKTVEKNRRMQMKSLYSELISLLPHHSSTE-PLTLPDQLDEAANYIKKLQ 65

Query: 69  KKVNLAKEKKEKLEGKN--KSSMNIESSSSSSSSSAS-----PQLKIHQSGRSLEIILSS 128
             V   +E+K  L      +   ++ SSS SSS   S     P+++I ++G    I L +
Sbjct: 66  VNVEKKRERKRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLVT 125

Query: 129 GLDNQYLFSETISILQEE-GVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEA-AKVTERL 184
            L+++++F E I +L EE G E+ +A +S+   +VF T H ++E    ++ A +++ ERL
Sbjct: 126 SLEHKFMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEEH--DYGARSQIPERL 185

[Close]

BLAST of CmoCh11G019630 vs. ExPASy Swiss-Prot
Match: F4I4E1 (Transcription factor bHLH167 OS=Arabidopsis thaliana OX=3702 GN=BHLH167 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-07
Identity = 54/186 (29.03%), Postives = 94/186 (50.54%), Query Frame = 0


Query: 1   MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60
           M R  +    +SS+ + +R + EK+RR +MK     L S+L +  S    L +P  ID+A
Sbjct: 1   MGRAREIGEGNSSSLREQRNLREKDRRMRMK----HLFSILSSHVSPTRKLPVPHLIDQA 60

Query: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSSSSASPQLKIHQSGRSLEIILS 120
             Y+ +L++ VN  KEKK  L       +  E  +    S   P+L I     ++E+ L 
Sbjct: 61  TSYMIQLKENVNYLKEKKRTL-------LQGELGNLYEGSFLLPKLSIRSRDSTIEMNLI 120

Query: 121 SGLD-NQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERL 180
             L+  + +  E +SI +EEG +V++A+          T  AQ   S I  + +++ ER+
Sbjct: 121 MDLNMKRVMLHELVSIFEEEGAQVMSANLQNLNDRTTYTIIAQAIISRIGIDPSRIEERV 175

Query: 181 KRLVYG 186
           ++++YG
Sbjct: 181 RKIIYG 175

[Close]

BLAST of CmoCh11G019630 vs. ExPASy Swiss-Prot
Match: Q9XIJ1 (Transcription factor bHLH168 OS=Arabidopsis thaliana OX=3702 GN=BHLH168 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.6e-07
Identity = 53/184 (28.80%), Postives = 93/184 (50.54%), Query Frame = 0


Query: 1   MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60
           M+R  +    S+S+ + +R + EK RR +MK     L S+L +  S    L +P  ID+A
Sbjct: 1   MERAREIGEGSASSLREQRNLREKERRMRMK----HLFSILSSHVSPTRRLPVPQLIDQA 60

Query: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSSSSASPQLKIHQSGRSLEIILS 120
           V Y+ +L++KVN   E K ++ G        E  + S  SS  P+L I      +E+ L 
Sbjct: 61  VSYMIQLKEKVNYLNEMKRRMLGG-------EVKNRSEGSSLLPKLSIRSLDSIIEMNLV 120

Query: 121 SGLDNQ-YLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERL 180
             L+ +  +  + +S+ +EEG +V++A+        F T  AQ     I  + +++ ERL
Sbjct: 121 MDLNMKGVMLHKLVSVFEEEGAQVMSANLQNLNDRTFYTIIAQAIICRIGIDPSRIEERL 173

Query: 181 KRLV 184
           + ++
Sbjct: 181 RDII 173

[Close]

BLAST of CmoCh11G019630 vs. ExPASy Swiss-Prot
Match: A2WZ60 (Protein IRON-RELATED TRANSCRIPTION FACTOR 2 OS=Oryza sativa subsp. indica OX=39946 GN=IRO2 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.4e-04
Identity = 53/182 (29.12%), Postives = 88/182 (48.35%), Query Frame = 0


Query: 8   STSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEAVKYIKEL 67
           S  S S  K+     E++RR Q+  L S L +LLP+ D  +  L++P  +   +KYI EL
Sbjct: 62  SGGSGSHRKLSHNAYERDRRKQLNELYSSLRALLPDADHTK-KLSIPTTVSRVLKYIPEL 121

Query: 68  EKKV-NLAKEKKEKLEGKNKSSMNIESSSSSSSSSASPQLK---IHQSGRSLEIILSSGL 127
           +K+V NL ++KKE       +       S   S   +P +    I+     +++ L S +
Sbjct: 122 QKQVENLERKKKELTTTSTTNCKPGVLGSQLMSEGMAPIVSATCINDMEIMVQVSLLSNV 181

Query: 128 DNQYL-FSETISILQEEGVEVVNASFSVS-GSSVFQTFHAQLEGSMIEFEAAKVTERLKR 184
               L  S+ I +L+ EG+  +++S S   G+  F + H Q     I  E     ERL++
Sbjct: 182 AGSVLPLSKCIKVLENEGLHFISSSTSSGFGNRTFYSIHLQRSEGTINEECPAFCERLEK 241

[Close]

BLAST of CmoCh11G019630 vs. ExPASy Swiss-Prot
Match: Q0JFZ0 (Protein IRON-RELATED TRANSCRIPTION FACTOR 2 OS=Oryza sativa subsp. japonica OX=39947 GN=IRO2 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.4e-04
Identity = 53/182 (29.12%), Postives = 88/182 (48.35%), Query Frame = 0


Query: 8   STSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEAVKYIKEL 67
           S  S S  K+     E++RR Q+  L S L +LLP+ D  ++S  +P  +   +KYI EL
Sbjct: 62  SGGSGSHRKLSHNAYERDRRKQLNELYSSLRALLPDADHTKLS--IPTTVSRVLKYIPEL 121

Query: 68  EKKV-NLAKEKKEKLEGKNKSSMNIESSSSSSSSSASPQLK---IHQSGRSLEIILSSGL 127
           +K+V NL ++KKE       +       S   S   +P +    I+     +++ L S +
Sbjct: 122 QKQVENLERKKKELTTTSTTNCKPGVLGSQLMSEGMAPIVSATCINDMEIMVQVSLLSNV 181

Query: 128 DNQYL-FSETISILQEEGVEVVNASFSVS-GSSVFQTFHAQLEGSMIEFEAAKVTERLKR 184
               L  S+ I +L+ EG+  +++S S   G+  F + H Q     I  E     ERL++
Sbjct: 182 AGSVLPLSKCIKVLENEGLHFISSSTSSGFGNRTFYSIHLQRSEGTINEECPAFCERLEK 241

[Close]

BLAST of CmoCh11G019630 vs. ExPASy TrEMBL
Match: A0A6J1EW58 (transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111437113 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 5.6e-102
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60
           MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA
Sbjct: 50  MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 109

Query: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSSSSASPQLKIHQSGRSLEIILS 120
           VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSSSSASPQLKIHQSGRSLEIILS
Sbjct: 110 VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSSSSASPQLKIHQSGRSLEIILS 169

Query: 121 SGLDNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLK 180
           SGLDNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLK
Sbjct: 170 SGLDNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLK 229

Query: 181 RLVYGSNSDMELQKEKQWWDEFPSDDLDY 210
           RLVYGSNSDMELQKEKQWWDEFPSDDLDY
Sbjct: 230 RLVYGSNSDMELQKEKQWWDEFPSDDLDY 258

[Close]

BLAST of CmoCh11G019630 vs. ExPASy TrEMBL
Match: A0A6J1JEF7 (transcription factor bHLH162-like OS=Cucurbita maxima OX=3661 GN=LOC111486157 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 7.1e-97
Identity = 200/209 (95.69%), Postives = 204/209 (97.61%), Query Frame = 0


Query: 1   MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60
           MDRHFQFSTSSSSAAKIERRI+EKNRRNQMKTLCSQLNSLLPNQDSKEISL+LPDQIDEA
Sbjct: 1   MDRHFQFSTSSSSAAKIERRIIEKNRRNQMKTLCSQLNSLLPNQDSKEISLSLPDQIDEA 60

Query: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSSSSASPQLKIHQSGRSLEIILS 120
           VKYIKELEKKVNLAKEKKEKLEGKNKS MNIE   SSSS SASPQLKIHQSGRSLEIILS
Sbjct: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSPMNIE---SSSSCSASPQLKIHQSGRSLEIILS 120

Query: 121 SGLDNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLK 180
           SGLDNQYLFSETISILQ+EGVEVVNASFSVSGSSVFQTFHAQLEGS+IEFEAAKVTERLK
Sbjct: 121 SGLDNQYLFSETISILQKEGVEVVNASFSVSGSSVFQTFHAQLEGSIIEFEAAKVTERLK 180

Query: 181 RLVYGSNSDMELQKEKQWWDEFPSDDLDY 210
           RLVYGSNSDMELQKEKQWWDEFPSDDLDY
Sbjct: 181 RLVYGSNSDMELQKEKQWWDEFPSDDLDY 206

[Close]

BLAST of CmoCh11G019630 vs. ExPASy TrEMBL
Match: A0A5D3C788 (Transcription factor bHLH55-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003340 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 1.0e-74
Identity = 156/208 (75.00%), Postives = 180/208 (86.54%), Query Frame = 0


Query: 1   MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60
           MD +FQFS SSS+AAKIERRI+EKNRRNQMK LC QL SL+P QDSKE+SLALPDQID A
Sbjct: 1   MDPNFQFSASSSTAAKIERRIIEKNRRNQMKNLCDQLKSLVPQQDSKEVSLALPDQIDVA 60

Query: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSSSSASPQLKIHQSGRSLEIILS 120
           +KYIK+LEKKVN AKEKK +L+GKNKS++N++SSSSS     SPQLKI+Q G+SLEI+LS
Sbjct: 61  IKYIKDLEKKVNSAKEKKNRLQGKNKSAINMDSSSSS-----SPQLKINQMGKSLEIVLS 120

Query: 121 SGLDNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLK 180
           SG+DNQYL  ET+ ILQEEG+EVVNASFSVSG SVF T HA+L  SM+EF   K TERLK
Sbjct: 121 SGIDNQYLLCETLRILQEEGIEVVNASFSVSGKSVFHTIHAELGDSMVEFGTTKATERLK 180

Query: 181 RLVYGSNSDMELQKEKQWWDEFPSDDLD 209
           RLVYGSNSD+ELQKEKQWWDEFPS++ D
Sbjct: 181 RLVYGSNSDVELQKEKQWWDEFPSENWD 203

[Close]

BLAST of CmoCh11G019630 vs. ExPASy TrEMBL
Match: A0A0A0K2C9 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G048070 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.7e-72
Identity = 155/210 (73.81%), Postives = 182/210 (86.67%), Query Frame = 0


Query: 1   MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60
           MD +FQFS SSS+AAKIERRI+EKNRRNQMK LC QL SL+P QDSKE+SLALPDQID A
Sbjct: 1   MDPNFQFSASSSTAAKIERRIIEKNRRNQMKNLCDQLKSLVPQQDSKEVSLALPDQIDVA 60

Query: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSSSSASPQLKIHQSGRSLEIILS 120
           +KYIK+LEK+VN AKEKK +L+GKNKS++N++SSSSSSSSS+SPQLKI+Q G+SLEIILS
Sbjct: 61  IKYIKDLEKRVNSAKEKKNRLQGKNKSAINMDSSSSSSSSSSSPQLKINQMGKSLEIILS 120

Query: 121 SGLDNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLK 180
           SG DNQYL  ET+ IL+EEG EVV+ASFSVSG+SVF T HAQL  SM+EF   K TERL 
Sbjct: 121 SGNDNQYLLCETLRILEEEGTEVVSASFSVSGNSVFHTIHAQLGDSMVEFGMTKATERLT 180

Query: 181 RLVYGSNSDMELQK-EKQWWDEFPSDDLDY 210
           RLVY SNSD+ELQK EKQWW EFPS++ ++
Sbjct: 181 RLVYRSNSDVELQKEEKQWWKEFPSENWEF 210

[Close]

BLAST of CmoCh11G019630 vs. ExPASy TrEMBL
Match: A0A1S3C1C4 (transcription factor bHLH55-like OS=Cucumis melo OX=3656 GN=LOC103495505 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 3.6e-72
Identity = 152/205 (74.15%), Postives = 177/205 (86.34%), Query Frame = 0


Query: 4   HFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEAVKY 63
           +FQFS SSS+AAKIERRI+EKNRRNQMK LC QL SL+P Q SKE+SLALPDQID A+KY
Sbjct: 5   NFQFSASSSTAAKIERRIIEKNRRNQMKNLCDQLKSLVPQQYSKEVSLALPDQIDVAIKY 64

Query: 64  IKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSSSSASPQLKIHQSGRSLEIILSSGL 123
           IK+LEKKVN AKEKK +L+GKNKS++N++SSSSS     SPQLKI+Q G+SLEI+LSSG+
Sbjct: 65  IKDLEKKVNSAKEKKNRLQGKNKSAINMDSSSSS-----SPQLKINQMGKSLEIVLSSGI 124

Query: 124 DNQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRLV 183
           DNQYL  ET+ ILQEEG+EVVNASFSVSG SVF T HA+L  SM+EF   K TERLKRLV
Sbjct: 125 DNQYLLCETLRILQEEGIEVVNASFSVSGKSVFHTIHAELGDSMVEFGTTKATERLKRLV 184

Query: 184 YGSNSDMELQKEKQWWDEFPSDDLD 209
           YGSNSD+ELQKEKQWW+EFPS++ D
Sbjct: 185 YGSNSDVELQKEKQWWEEFPSENWD 204

[Close]

BLAST of CmoCh11G019630 vs. TAIR 10
Match: AT4G20970.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-18
Identity = 68/184 (36.96%), Postives = 113/184 (61.41%), Query Frame = 0


Query: 9   TSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEAVKYIKELE 68
           +++  +  ++R+ VEKNRR QMK+L S+L SLLP+  S E  L LPDQ+DEA  YIK+L+
Sbjct: 6   SNTGQSRSVDRKTVEKNRRMQMKSLYSELISLLPHHSSTE-PLTLPDQLDEAANYIKKLQ 65

Query: 69  KKVNLAKEKKEKLEGKN--KSSMNIESSSSSSSSSAS-----PQLKIHQSGRSLEIILSS 128
             V   +E+K  L      +   ++ SSS SSS   S     P+++I ++G    I L +
Sbjct: 66  VNVEKKRERKRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLVT 125

Query: 129 GLDNQYLFSETISILQEE-GVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEA-AKVTERL 184
            L+++++F E I +L EE G E+ +A +S+   +VF T H ++E    ++ A +++ ERL
Sbjct: 126 SLEHKFMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEEH--DYGARSQIPERL 185

[Close]

BLAST of CmoCh11G019630 vs. TAIR 10
Match: AT1G10585.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 7.2e-09
Identity = 54/186 (29.03%), Postives = 94/186 (50.54%), Query Frame = 0


Query: 1   MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60
           M R  +    +SS+ + +R + EK+RR +MK     L S+L +  S    L +P  ID+A
Sbjct: 1   MGRAREIGEGNSSSLREQRNLREKDRRMRMK----HLFSILSSHVSPTRKLPVPHLIDQA 60

Query: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSSSSASPQLKIHQSGRSLEIILS 120
             Y+ +L++ VN  KEKK  L       +  E  +    S   P+L I     ++E+ L 
Sbjct: 61  TSYMIQLKENVNYLKEKKRTL-------LQGELGNLYEGSFLLPKLSIRSRDSTIEMNLI 120

Query: 121 SGLD-NQYLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERL 180
             L+  + +  E +SI +EEG +V++A+          T  AQ   S I  + +++ ER+
Sbjct: 121 MDLNMKRVMLHELVSIFEEEGAQVMSANLQNLNDRTTYTIIAQAIISRIGIDPSRIEERV 175

Query: 181 KRLVYG 186
           ++++YG
Sbjct: 181 RKIIYG 175

[Close]

BLAST of CmoCh11G019630 vs. TAIR 10
Match: AT1G10586.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 6.1e-08
Identity = 53/184 (28.80%), Postives = 93/184 (50.54%), Query Frame = 0


Query: 1   MDRHFQFSTSSSSAAKIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEA 60
           M+R  +    S+S+ + +R + EK RR +MK     L S+L +  S    L +P  ID+A
Sbjct: 1   MERAREIGEGSASSLREQRNLREKERRMRMK----HLFSILSSHVSPTRRLPVPQLIDQA 60

Query: 61  VKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSSSSASPQLKIHQSGRSLEIILS 120
           V Y+ +L++KVN   E K ++ G        E  + S  SS  P+L I      +E+ L 
Sbjct: 61  VSYMIQLKEKVNYLNEMKRRMLGG-------EVKNRSEGSSLLPKLSIRSLDSIIEMNLV 120

Query: 121 SGLDNQ-YLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERL 180
             L+ +  +  + +S+ +EEG +V++A+        F T  AQ     I  + +++ ERL
Sbjct: 121 MDLNMKGVMLHKLVSVFEEEGAQVMSANLQNLNDRTFYTIIAQAIICRIGIDPSRIEERL 173

Query: 181 KRLV 184
           + ++
Sbjct: 181 RDII 173

[Close]

BLAST of CmoCh11G019630 vs. TAIR 10
Match: AT5G51780.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 2.4e-04
Identity = 48/172 (27.91%), Postives = 83/172 (48.26%), Query Frame = 0


Query: 16  KIERRIVEKNRRNQMKTLCSQLNSLLPNQDSKEISLALPDQIDEAVKYIKELEKKVNLAK 75
           K+  R  E+ RR +M +L + L SLLP    K    +  DQ++EAV YIK L++K+    
Sbjct: 3   KMMHRETERQRRQEMASLYASLRSLLPLHFIKG-KRSTSDQVNEAVNYIKYLQRKIKELS 62

Query: 76  EKKEKL----EGKNKSSMNIESSSSSSSSSASPQLKIHQSGRSLEIILSSG-LDNQYLFS 135
            +++ L     G    S N +        S    + + Q    +EI+LSS     Q  FS
Sbjct: 63  VRRDDLMVLSRGSLLGSSNGDFKEDVEMISGKNHVVVRQCLVGVEIMLSSRCCGGQPRFS 122

Query: 136 ETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIEFEAAKVTERLKRL 183
             + +L E G+ ++N+  S+    +  T  A++    +  + A++ +RL R+
Sbjct: 123 SVLQVLSEYGLCLLNSISSIVDDRLVYTIQAEVNDMALMIDLAELEKRLIRM 173

[Close]

BLAST of CmoCh11G019630 vs. TAIR 10
Match: AT1G10586.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 3.1e-04
Identity = 38/134 (28.36%), Postives = 68/134 (50.75%), Query Frame = 0


Query: 51  LALPDQIDEAVKYIKELEKKVNLAKEKKEKLEGKNKSSMNIESSSSSSSSSASPQLKIHQ 110
           L +P  ID+AV Y+ +L++KVN   E K ++ G        E  + S  SS  P+L I  
Sbjct: 6   LPVPQLIDQAVSYMIQLKEKVNYLNEMKRRMLGG-------EVKNRSEGSSLLPKLSIRS 65

Query: 111 SGRSLEIILSSGLDNQ-YLFSETISILQEEGVEVVNASFSVSGSSVFQTFHAQLEGSMIE 170
               +E+ L   L+ +  +  + +S+ +EEG +V++A+        F T  AQ     I 
Sbjct: 66  LDSIIEMNLVMDLNMKGVMLHKLVSVFEEEGAQVMSANLQNLNDRTFYTIIAQAIICRIG 125

Query: 171 FEAAKVTERLKRLV 184
            + +++ ERL+ ++
Sbjct: 126 IDPSRIEERLRDII 132

The following BLAST results are available for this feature:

BLAST of CmoCh11G019630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JIJ7	1.9e-17	36.96	Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=...	[more]
F4I4E1	1.0e-07	29.03	Transcription factor bHLH167 OS=Arabidopsis thaliana OX=3702 GN=BHLH167 PE=2 SV=...	[more]
Q9XIJ1	8.6e-07	28.80	Transcription factor bHLH168 OS=Arabidopsis thaliana OX=3702 GN=BHLH168 PE=3 SV=...	[more]
A2WZ60	1.4e-04	29.12	Protein IRON-RELATED TRANSCRIPTION FACTOR 2 OS=Oryza sativa subsp. indica OX=399...	[more]
Q0JFZ0	1.4e-04	29.12	Protein IRON-RELATED TRANSCRIPTION FACTOR 2 OS=Oryza sativa subsp. japonica OX=3...	[more]

BLAST of CmoCh11G019630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EW58	5.6e-102	100.00	transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111437113 ...	[more]
A0A6J1JEF7	7.1e-97	95.69	transcription factor bHLH162-like OS=Cucurbita maxima OX=3661 GN=LOC111486157 PE...	[more]
A0A5D3C788	1.0e-74	75.00	Transcription factor bHLH55-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A0A0K2C9	2.7e-72	73.81	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G048070 PE=4 S...	[more]
A0A1S3C1C4	3.6e-72	74.15	transcription factor bHLH55-like OS=Cucumis melo OX=3656 GN=LOC103495505 PE=4 SV...	[more]

BLAST of CmoCh11G019630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20970.1	1.3e-18	36.96	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10585.1	7.2e-09	29.03	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10586.1	6.1e-08	28.80	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G51780.1	2.4e-04	27.91	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10586.2	3.1e-04	28.36	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 57..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..105
None	No IPR available	PANTHER	PTHR13935:SF63	HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN	coord: 10..190
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 14..96 e-value: 9.1E-9 score: 37.4
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 16..85
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 18..68 e-value: 7.6E-6 score: 25.9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 14..67 score: 11.318499
IPR015660	Achaete-scute transcription factor-related	PANTHER	PTHR13935	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	coord: 10..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G019630.1	CmoCh11G019630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2000112	regulation of cellular macromolecule biosynthetic process
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0090575	RNA polymerase II transcription regulator complex
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity