CmoCh11G018980 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G018980
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionThiF domain-containing protein
LocationCmo_Chr11: 13193571 .. 13193951 (-)
RNA-Seq ExpressionCmoCh11G018980
SyntenyCmoCh11G018980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCGAAGATCCAGAGCGTTTCCCCGATCGTCCAAATCTCACTCCGAGACGTTCCATAAGTATCTAAAGCCCGGTGCTCTAGCGCAAATTCGGAATTCCCGGATGATCGCTCGATTCAATCGTGTCAATTTGGTATCTCAGATCTACTCCACTCGTTTCTCATCGCTTTCGCCGCCGACTGCGCCGATCGACTCCGCTTTGCTTCAGGTGAACATTGTTGATGCTTCTCCTTGCTTTGCTGGGAGGGTGTACGGTCCACTCTGCTTGCAGAGGAAGAAACTTTTGGCTGCTAAGTCGTTGTGGTTTCTTAGTTCTAGTCCGACGAATTTGACTCCTGATTCTCCGCCTGATCCGGTTATTGAAGTGTTAGGGGGGTGA

mRNA sequence

ATGAATCGAAGATCCAGAGCGTTTCCCCGATCGTCCAAATCTCACTCCGAGACGTTCCATAAGTATCTAAAGCCCGGTGCTCTAGCGCAAATTCGGAATTCCCGGATGATCGCTCGATTCAATCGTGTCAATTTGGTATCTCAGATCTACTCCACTCGTTTCTCATCGCTTTCGCCGCCGACTGCGCCGATCGACTCCGCTTTGCTTCAGGTGAACATTGTTGATGCTTCTCCTTGCTTTGCTGGGAGGGTGTACGGTCCACTCTGCTTGCAGAGGAAGAAACTTTTGGCTGCTAAGTCGTTGTGGTTTCTTAGTTCTAGTCCGACGAATTTGACTCCTGATTCTCCGCCTGATCCGGTTATTGAAGTGTTAGGGGGGTGA

Coding sequence (CDS)

ATGAATCGAAGATCCAGAGCGTTTCCCCGATCGTCCAAATCTCACTCCGAGACGTTCCATAAGTATCTAAAGCCCGGTGCTCTAGCGCAAATTCGGAATTCCCGGATGATCGCTCGATTCAATCGTGTCAATTTGGTATCTCAGATCTACTCCACTCGTTTCTCATCGCTTTCGCCGCCGACTGCGCCGATCGACTCCGCTTTGCTTCAGGTGAACATTGTTGATGCTTCTCCTTGCTTTGCTGGGAGGGTGTACGGTCCACTCTGCTTGCAGAGGAAGAAACTTTTGGCTGCTAAGTCGTTGTGGTTTCTTAGTTCTAGTCCGACGAATTTGACTCCTGATTCTCCGCCTGATCCGGTTATTGAAGTGTTAGGGGGGTGA

Protein sequence

MNRRSRAFPRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRFSSLSPPTAPIDSALLQVNIVDASPCFAGRVYGPLCLQRKKLLAAKSLWFLSSSPTNLTPDSPPDPVIEVLGG
Homology
BLAST of CmoCh11G018980 vs. ExPASy TrEMBL
Match: A0A6J1EXJ2 (uncharacterized protein LOC111437092 OS=Cucurbita moschata OX=3662 GN=LOC111437092 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.4e-63
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0

Query: 1   MNRRSRAFPRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRFSSLSPP 60
           MNRRSRAFPRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRFSSLSPP
Sbjct: 1   MNRRSRAFPRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRFSSLSPP 60

Query: 61  TAPIDSALLQVNIVDASPCFAGRVYGPLCLQRKKLLAAKSLWFLSSSPTNLTPDSPPDPV 120
           TAPIDSALLQVNIVDASPCFAGRVYGPLCLQRKKLLAAKSLWFLSSSPTNLTPDSPPDPV
Sbjct: 61  TAPIDSALLQVNIVDASPCFAGRVYGPLCLQRKKLLAAKSLWFLSSSPTNLTPDSPPDPV 120

Query: 121 IEVLGG 127
           IEVLGG
Sbjct: 121 IEVLGG 126

BLAST of CmoCh11G018980 vs. ExPASy TrEMBL
Match: A0A6J1JMJ5 (uncharacterized protein LOC111486563 OS=Cucurbita maxima OX=3661 GN=LOC111486563 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 2.9e-61
Identity = 124/126 (98.41%), Postives = 124/126 (98.41%), Query Frame = 0

Query: 1   MNRRSRAFPRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRFSSLSPP 60
           MNRRSRAFPRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTR SSLSPP
Sbjct: 1   MNRRSRAFPRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPP 60

Query: 61  TAPIDSALLQVNIVDASPCFAGRVYGPLCLQRKKLLAAKSLWFLSSSPTNLTPDSPPDPV 120
           TAPIDSALLQVNIVDASPCFAGRVYGPLCLQRKKLLAAKSLWFLSSS TNLTPDSPPDPV
Sbjct: 61  TAPIDSALLQVNIVDASPCFAGRVYGPLCLQRKKLLAAKSLWFLSSSLTNLTPDSPPDPV 120

Query: 121 IEVLGG 127
           IEVLGG
Sbjct: 121 IEVLGG 126

BLAST of CmoCh11G018980 vs. ExPASy TrEMBL
Match: A0A6J1C424 (uncharacterized protein LOC111007734 OS=Momordica charantia OX=3673 GN=LOC111007734 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.3e-53
Identity = 112/126 (88.89%), Postives = 115/126 (91.27%), Query Frame = 0

Query: 1   MNRRSRAFPRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRFSSLSPP 60
           MNRRSR F RS  S SE+FHKYLKPGALAQIRNSRMIARFNRVNLVSQIYS R SSLSPP
Sbjct: 1   MNRRSRTFHRSGNSRSESFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSNR-SSLSPP 60

Query: 61  TAPIDSALLQVNIVDASPCFAGRVYGPLCLQRKKLLAAKSLWFLSSSPTNLTPDSPPDPV 120
           +AP+DS LLQVNIVDASPCFAGRVYGP CLQRKKLLAAKSLWFLS SPTNL PDSPPDPV
Sbjct: 61  SAPLDSGLLQVNIVDASPCFAGRVYGPPCLQRKKLLAAKSLWFLSPSPTNLVPDSPPDPV 120

Query: 121 IEVLGG 127
           IEVLGG
Sbjct: 121 IEVLGG 125

BLAST of CmoCh11G018980 vs. ExPASy TrEMBL
Match: A0A6J1GLZ8 (uncharacterized protein LOC111455201 OS=Cucurbita moschata OX=3662 GN=LOC111455201 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.5e-52
Identity = 114/127 (89.76%), Postives = 115/127 (90.55%), Query Frame = 0

Query: 1   MNRRSRAFPRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRFSSLSPP 60
           MNRRSR   RS  SHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTR SSLSP 
Sbjct: 1   MNRRSR---RSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRSSSLSPS 60

Query: 61  TAPIDSALLQVNIVDASPCFAGRVYGPLCLQRKKLLAAK-SLWFLSSSPTNLTPDSPPDP 120
           TAPI S LLQVNI DASPCFAGRVYGPLCLQRKKLLAAK SLWFL+SSPTNLTPDSPPDP
Sbjct: 61  TAPIGSGLLQVNIADASPCFAGRVYGPLCLQRKKLLAAKSSLWFLASSPTNLTPDSPPDP 120

Query: 121 VIEVLGG 127
           VI VLGG
Sbjct: 121 VIGVLGG 124

BLAST of CmoCh11G018980 vs. ExPASy TrEMBL
Match: A0A6J1HVZ0 (uncharacterized protein LOC111468346 OS=Cucurbita maxima OX=3661 GN=LOC111468346 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.6e-49
Identity = 109/127 (85.83%), Postives = 112/127 (88.19%), Query Frame = 0

Query: 1   MNRRSRAFPRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRFSSLSPP 60
           MNRRSR   RS  SHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTR SSLS  
Sbjct: 1   MNRRSR---RSGNSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRPSSLSSS 60

Query: 61  TAPIDSALLQVNIVDASPCFAGRVYGPLCLQRKKLLAAK-SLWFLSSSPTNLTPDSPPDP 120
           T P+ S LLQVN+ DASPCFAGRVYGPLCLQRKKLLAAK SLWFL+SS TNLTPDSPPDP
Sbjct: 61  TTPMGSGLLQVNVADASPCFAGRVYGPLCLQRKKLLAAKSSLWFLASSLTNLTPDSPPDP 120

Query: 121 VIEVLGG 127
           VI VLGG
Sbjct: 121 VIGVLGG 124

BLAST of CmoCh11G018980 vs. TAIR 10
Match: AT5G54970.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-10
Identity = 38/94 (40.43%), Postives = 50/94 (53.19%), Query Frame = 0

Query: 10  RSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRFSSLSPPTAPIDSALL 69
           +S    S+ FH+YLKPGALAQIRNSR+ AR     +     S     +SP    +D A  
Sbjct: 6   KSPARRSDGFHRYLKPGALAQIRNSRINARSTTSLVSRSSLSQLVDPISPSENSVDEAAA 65

Query: 70  QVN--IVDASPCFAGRVYGPLCLQRKKLLAAKSL 102
                 +D  P    ++YGP   QRKKL AA+S+
Sbjct: 66  ASRNLTIDQVPHLLRKIYGPYSYQRKKLAAARSV 99

BLAST of CmoCh11G018980 vs. TAIR 10
Match: AT4G26960.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54970.1); Has 22 Blast hits to 22 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 6.3e-08
Identity = 37/110 (33.64%), Postives = 56/110 (50.91%), Query Frame = 0

Query: 6   RAFPRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRFSSLSPPTAPID 65
           +   RS    ++ FH+Y+KPGALAQIRN    AR N       +  +    + PP++  +
Sbjct: 31  KGISRSPVRRNDGFHRYMKPGALAQIRN----ARINNARSNFPLTRSLSDPVDPPSSSSE 90

Query: 66  S---ALLQVNIVDASPCFAGRVYGPLCLQRKKLLAAKSLWF-LSSSPTNL 112
           S   A  Q   +D  P    ++YGP  + RKKL  A+S    L+ SP ++
Sbjct: 91  SPIAATPQTITMDQMPHLLSKIYGPYRIGRKKLGPARSAMVKLNPSPNSI 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EXJ22.4e-63100.00uncharacterized protein LOC111437092 OS=Cucurbita moschata OX=3662 GN=LOC1114370... [more]
A0A6J1JMJ52.9e-6198.41uncharacterized protein LOC111486563 OS=Cucurbita maxima OX=3661 GN=LOC111486563... [more]
A0A6J1C4241.3e-5388.89uncharacterized protein LOC111007734 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
A0A6J1GLZ81.5e-5289.76uncharacterized protein LOC111455201 OS=Cucurbita moschata OX=3662 GN=LOC1114552... [more]
A0A6J1HVZ02.6e-4985.83uncharacterized protein LOC111468346 OS=Cucurbita maxima OX=3661 GN=LOC111468346... [more]
Match NameE-valueIdentityDescription
AT5G54970.11.8e-1040.43unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G26960.16.3e-0833.64unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35495:SF10SUBFAMILY NOT NAMEDcoord: 1..125
NoneNo IPR availablePANTHERPTHR35495OS06G0679600 PROTEINcoord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G018980.1CmoCh11G018980.1mRNA