CmoCh11G018980 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATCGAAGATCCAGAGCGTTTCCCCGATCGTCCAAATCTCACTCCGAGACGTTCCATAAGTATCTAAAGCCCGGTGCTCTAGCGCAAATTCGGAATTCCCGGATGATCGCTCGATTCAATCGTGTCAATTTGGTATCTCAGATCTACTCCACTCGTTTCTCATCGCTTTCGCCGCCGACTGCGCCGATCGACTCCGCTTTGCTTCAGGTGAACATTGTTGATGCTTCTCCTTGCTTTGCTGGGAGGGTGTACGGTCCACTCTGCTTGCAGAGGAAGAAACTTTTGGCTGCTAAGTCGTTGTGGTTTCTTAGTTCTAGTCCGACGAATTTGACTCCTGATTCTCCGCCTGATCCGGTTATTGAAGTGTTAGGGGGGTGA ATGAATCGAAGATCCAGAGCGTTTCCCCGATCGTCCAAATCTCACTCCGAGACGTTCCATAAGTATCTAAAGCCCGGTGCTCTAGCGCAAATTCGGAATTCCCGGATGATCGCTCGATTCAATCGTGTCAATTTGGTATCTCAGATCTACTCCACTCGTTTCTCATCGCTTTCGCCGCCGACTGCGCCGATCGACTCCGCTTTGCTTCAGGTGAACATTGTTGATGCTTCTCCTTGCTTTGCTGGGAGGGTGTACGGTCCACTCTGCTTGCAGAGGAAGAAACTTTTGGCTGCTAAGTCGTTGTGGTTTCTTAGTTCTAGTCCGACGAATTTGACTCCTGATTCTCCGCCTGATCCGGTTATTGAAGTGTTAGGGGGGTGA ATGAATCGAAGATCCAGAGCGTTTCCCCGATCGTCCAAATCTCACTCCGAGACGTTCCATAAGTATCTAAAGCCCGGTGCTCTAGCGCAAATTCGGAATTCCCGGATGATCGCTCGATTCAATCGTGTCAATTTGGTATCTCAGATCTACTCCACTCGTTTCTCATCGCTTTCGCCGCCGACTGCGCCGATCGACTCCGCTTTGCTTCAGGTGAACATTGTTGATGCTTCTCCTTGCTTTGCTGGGAGGGTGTACGGTCCACTCTGCTTGCAGAGGAAGAAACTTTTGGCTGCTAAGTCGTTGTGGTTTCTTAGTTCTAGTCCGACGAATTTGACTCCTGATTCTCCGCCTGATCCGGTTATTGAAGTGTTAGGGGGGTGA MNRRSRAFPRSSKSHSETFHKYLKPGALAQIRNSRMIARFNRVNLVSQIYSTRFSSLSPPTAPIDSALLQVNIVDASPCFAGRVYGPLCLQRKKLLAAKSLWFLSSSPTNLTPDSPPDPVIEVLGG Homology
BLAST of CmoCh11G018980 vs. ExPASy TrEMBL
Match: A0A6J1EXJ2 (uncharacterized protein LOC111437092 OS=Cucurbita moschata OX=3662 GN=LOC111437092 PE=4 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 2.4e-63 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
BLAST of CmoCh11G018980 vs. ExPASy TrEMBL
Match: A0A6J1JMJ5 (uncharacterized protein LOC111486563 OS=Cucurbita maxima OX=3661 GN=LOC111486563 PE=4 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 2.9e-61 Identity = 124/126 (98.41%), Postives = 124/126 (98.41%), Query Frame = 0
BLAST of CmoCh11G018980 vs. ExPASy TrEMBL
Match: A0A6J1C424 (uncharacterized protein LOC111007734 OS=Momordica charantia OX=3673 GN=LOC111007734 PE=4 SV=1) HSP 1 Score: 218.8 bits (556), Expect = 1.3e-53 Identity = 112/126 (88.89%), Postives = 115/126 (91.27%), Query Frame = 0
BLAST of CmoCh11G018980 vs. ExPASy TrEMBL
Match: A0A6J1GLZ8 (uncharacterized protein LOC111455201 OS=Cucurbita moschata OX=3662 GN=LOC111455201 PE=4 SV=1) HSP 1 Score: 215.3 bits (547), Expect = 1.5e-52 Identity = 114/127 (89.76%), Postives = 115/127 (90.55%), Query Frame = 0
BLAST of CmoCh11G018980 vs. ExPASy TrEMBL
Match: A0A6J1HVZ0 (uncharacterized protein LOC111468346 OS=Cucurbita maxima OX=3661 GN=LOC111468346 PE=4 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 2.6e-49 Identity = 109/127 (85.83%), Postives = 112/127 (88.19%), Query Frame = 0
BLAST of CmoCh11G018980 vs. TAIR 10
Match: AT5G54970.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 63.2 bits (152), Expect = 1.8e-10 Identity = 38/94 (40.43%), Postives = 50/94 (53.19%), Query Frame = 0
BLAST of CmoCh11G018980 vs. TAIR 10
Match: AT4G26960.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54970.1); Has 22 Blast hits to 22 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 54.7 bits (130), Expect = 6.3e-08 Identity = 37/110 (33.64%), Postives = 56/110 (50.91%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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