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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. CTCAGGCGAAACGCTAACTACTCTAACATCTACTATAGCCTCTCTGCCTGTAAGTCATGCAGTCGCTGCTCTTGCCGGTAGCTCGCACCGGTGCCTTCCCGGCCGCCGCAGTCTATTCATCGGATTTTCACCTCAGCCGCTTCCATTGCCGGCCTTTCTCTGTACGAGGCCGTCAAGCGTCCGATCTCAATTCTCCTTCCAATTCACTTCCTTCGTTAAGCGCCATTCGATCTTCTTCTTCTTCTTCTTCTTCGTTGTTGCTTTCAAAGACTTTTGGTACTCTGGAGCATAGGAGAGGAAAATTTTGTTTGGAAACACGCGCTTCTTCTAGTTCCATTTCGCCGACGGTTCCCCCAATTGATGAGGCTGAAAAGTTGAAACTGGCTCAGGTTCTCGTTCTTTTGATTCTTTCGGTTGTTATTTTACTTAAGATGAGGAATGTAGCCTTGAAAATTACGCGTGAAATCATGAAGAATTTTATGTTGGTTTTATCATTGATGAATCAATTACATTAGTTTTAGAAAATTCTTGTCTCTAATTTTAACGACTGGATGTTTCTATTATATTATTAATGAACGTTTACGCTTTGTAACTCTTTAGCTATTTCCTGAGAAAGCAGAATAAGGGAACAGCTAAATCACATTTGTAGTTGACAGGCATGGAAGAGTAGAATGTAGGTAGATTAGCTACCAAGCATAAGAAATTACACATAGAAAGTAAGCCACTAGAGCTATAGACAGTATATTAAGTACACTCTGAACAAGTGTACACCATGAGAAAGGACGCAGGCAGTACATTCTAGGCACGATGAACTTGGTGCAACTGTTTATGGAACTTTGTTTCTTTGACAGACATTTTATTATACAGTGTGATATTAGAGGAACATCCTCAGCATTTGTTAAGTGTCATGGAGGTATCATACTGGAAGGGGATAAGAAAGATGGTTCGTGAGCATGCATCAAATTGTGAAGCTTCTATAGCTTTTTTATTTTTTAAGAAAATCATCAAGCTCTGTGGTTGACCTAGTAGCTCCATGAGCAACTTTTTGAATGAAATATTCAAACTAGAGGCTACAGGGTATTGTTTTGAAGCACAACATAGCATGCAATCTTCAAATGGATTAATAATCAGAGGTTGATATCAGGGGTTGGAGACTAGGCGCTTAGTGAAGTCCATGACATTTAACATATTTTGGGAAGAATAAGCATTCTAAGTAGGGAAAGTGGAGTGATTTTGTACAAGAGAAGAGAAACTACTCGAGCAGAGAGCAGGTGAGAAAGTGCGTGTGAATGTAAGCTCGCAGTTTATAATGGACAGAAAAAGCAGAAGCTTAGGTGGCTTATGTGCCGAGCATAAGTAAGAAAAATCATGCTTATGTGCTGAGCATAGGTGTTTAAATTGTTTCTTCATTATAATCAAACTAGGCTGGAATAGATTAAATGGGAAAAAAACAATAAAATTTGTTTTAATACTACGTTCTTATGACTCTCACAAAGTGAAAAAAAAAAAAAAAATCCGATTTTGTCATCTAGGATAATATTGTGTTCTGACCATTATCCTGCTGTTGTTGTTATTAATTGCTTGTTTAGTGGCTTAATTAGTTTGTGGTTTGTTAAGTGGTTTACTACGTTACTGTCAGTTAATTGGCAGCATATAGTCAAGTGCTATGCCTTTGTAGTCATTACTTTTGAGTTGAACAATGATTTCTTGCGAGTGTTCTTCAATAGGTTCCTAGATTGCTTCATTATGAGTATTGCTAACATATGACGAACCAAGTTGTTTTGATGGTTTAGGTGGCAAAGAGATTAGAGAAGACATCGAGGTACTTCAAGAGGTTGGGTAATCTTGGATTTTGGGGACAGTTGGTGCTCACTGTTGTGGCTGCCGTTATTCTTTCATGTTCTGTTGTCATCACCGGGAAAATTACATCACCTGCCACTTTTTATGCTACTGCTGGTGGTATTGTGGCAGCTTTCATTTCTGTATTTTGGTCCTTTGGTTACATTCGGCTTTCTGGTAAACTTCGACGAACTGCAAACCAGCCCTCCAAGGTAATATTTCCAGCTTTCAGTATGCTTCCTTTCCTTGGTTCCTCTCATTTATTTTTGCCATATTGCACCAATAGGCTTGATTCTGTGATCTGGTATCTGAATGTATAGCTTCTTTTTACGTAATTTTAGATGCAAAACATGAGCATGTGGAAGATGAAGTAGAAAATTGACAAACTCATGTTACGGCGTTTTATTTGTTGATCCTGATTTCAGGCTCCTCCTCGGGCCGATGTCGTGAATAGTCTAAAAAATGGAATTGTGATGAACCTTCTGGGCATGGGTGCTGCCATTCTGGGGATGCAAGCGTCGGTGGGATTGTTAGTTGCTAAGGCTCTTACTTCCTCTGCAACTCCATATTTCCAGGCAGCCTCGCCTGGGAATAGCCCTGTTCTTGCTTGGGATGTATTCTTGGTACAGGTACGTTTTTTCTCAATGGTTATTTTGCTGAAAAAAAAAAAATAAAAGATCTTCAGAGTTTGGACTTGGAAAAATGTTGCATGTACATGTCATTGAAAATAAGGTTGAAAATTGATGGAACTGGTACGCTAAAAAGGCATATGATTGAATTCCATTGCTGCATTGCTGGATATGATGTGAGATTCCACCTTGGTTGAAGAGGGGAACGAAGCATTCTTTATATGGGTGTGGAAATCTCTCTCTAGCAGACACGTTTTAAAACTTTGAGGAAAAATTCAAAGATAACAATATCTGCTTGCAGAGAGCTTGAGCTGTTACAAATGATATCAGAGACTGACATCGGGCGGTGTTCCAGCGAGGACGCTGGCCCCCAAGGGAGGTGGATTGTGAGATCTCACATCGGTTGGAGATGGGAACAAAGCATTCTTTATAAGAGTGTAGAAACCTCTCCGTAGCAAATGTGTTTTAAAACCTTGAGGGAAATTGCAGAAGGGAAAGCCCAAAGAAGACAATATTTGCTAGCGGTGGGCTTGAGCCGTTAGATATGATTACTCACTCAAGCATATGAACCAACTGCCATTTAATAACTTCCTTAACTTCCCCTTTTGCAGGCTTCTGCAAACACTATCCTCTCGCATTTCCTCGGGCTCGTTTTCTCGTTGGAGCTACTGCGGTCGGTGACATTACCTGCTGCTGAGAGCATTCGTATCCCCCAAATAGCATAA mRNA sequence CTCAGGCGAAACGCTAACTACTCTAACATCTACTATAGCCTCTCTGCCTGTAAGTCATGCAGTCGCTGCTCTTGCCGGTAGCTCGCACCGGTGCCTTCCCGGCCGCCGCAGTCTATTCATCGGATTTTCACCTCAGCCGCTTCCATTGCCGGCCTTTCTCTGTACGAGGCCGTCAAGCGTCCGATCTCAATTCTCCTTCCAATTCACTTCCTTCGTTAAGCGCCATTCGATCTTCTTCTTCTTCTTCTTCTTCGTTGTTGCTTTCAAAGACTTTTGGTACTCTGGAGCATAGGAGAGGAAAATTTTGTTTGGAAACACGCGCTTCTTCTAGTTCCATTTCGCCGACGGTTCCCCCAATTGATGAGGCTGAAAAGTTGAAACTGGCTCAGGTGGCAAAGAGATTAGAGAAGACATCGAGGTACTTCAAGAGGTTGGGTAATCTTGGATTTTGGGGACAGTTGGTGCTCACTGTTGTGGCTGCCGTTATTCTTTCATGTTCTGTTGTCATCACCGGGAAAATTACATCACCTGCCACTTTTTATGCTACTGCTGGTGGTATTGTGGCAGCTTTCATTTCTGTATTTTGGTCCTTTGGTTACATTCGGCTTTCTGGTAAACTTCGACGAACTGCAAACCAGCCCTCCAAGGCTCCTCCTCGGGCCGATGTCGTGAATAGTCTAAAAAATGGAATTGTGATGAACCTTCTGGGCATGGGTGCTGCCATTCTGGGGATGCAAGCGTCGGTGGGATTGTTAGTTGCTAAGGCTCTTACTTCCTCTGCAACTCCATATTTCCAGGCAGCCTCGCCTGGGAATAGCCCTGTTCTTGCTTGGGATGTATTCTTGGTACAGGCTTCTGCAAACACTATCCTCTCGCATTTCCTCGGGCTCGTTTTCTCGTTGGAGCTACTGCGGTCGGTGACATTACCTGCTGCTGAGAGCATTCGTATCCCCCAAATAGCATAA Coding sequence (CDS) ATGCAGTCGCTGCTCTTGCCGGTAGCTCGCACCGGTGCCTTCCCGGCCGCCGCAGTCTATTCATCGGATTTTCACCTCAGCCGCTTCCATTGCCGGCCTTTCTCTGTACGAGGCCGTCAAGCGTCCGATCTCAATTCTCCTTCCAATTCACTTCCTTCGTTAAGCGCCATTCGATCTTCTTCTTCTTCTTCTTCTTCGTTGTTGCTTTCAAAGACTTTTGGTACTCTGGAGCATAGGAGAGGAAAATTTTGTTTGGAAACACGCGCTTCTTCTAGTTCCATTTCGCCGACGGTTCCCCCAATTGATGAGGCTGAAAAGTTGAAACTGGCTCAGGTGGCAAAGAGATTAGAGAAGACATCGAGGTACTTCAAGAGGTTGGGTAATCTTGGATTTTGGGGACAGTTGGTGCTCACTGTTGTGGCTGCCGTTATTCTTTCATGTTCTGTTGTCATCACCGGGAAAATTACATCACCTGCCACTTTTTATGCTACTGCTGGTGGTATTGTGGCAGCTTTCATTTCTGTATTTTGGTCCTTTGGTTACATTCGGCTTTCTGGTAAACTTCGACGAACTGCAAACCAGCCCTCCAAGGCTCCTCCTCGGGCCGATGTCGTGAATAGTCTAAAAAATGGAATTGTGATGAACCTTCTGGGCATGGGTGCTGCCATTCTGGGGATGCAAGCGTCGGTGGGATTGTTAGTTGCTAAGGCTCTTACTTCCTCTGCAACTCCATATTTCCAGGCAGCCTCGCCTGGGAATAGCCCTGTTCTTGCTTGGGATGTATTCTTGGTACAGGCTTCTGCAAACACTATCCTCTCGCATTTCCTCGGGCTCGTTTTCTCGTTGGAGCTACTGCGGTCGGTGACATTACCTGCTGCTGAGAGCATTCGTATCCCCCAAATAGCATAA Protein sequence MQSLLLPVARTGAFPAAAVYSSDFHLSRFHCRPFSVRGRQASDLNSPSNSLPSLSAIRSSSSSSSSLLLSKTFGTLEHRRGKFCLETRASSSSISPTVPPIDEAEKLKLAQVAKRLEKTSRYFKRLGNLGFWGQLVLTVVAAVILSCSVVITGKITSPATFYATAGGIVAAFISVFWSFGYIRLSGKLRRTANQPSKAPPRADVVNSLKNGIVMNLLGMGAAILGMQASVGLLVAKALTSSATPYFQAASPGNSPVLAWDVFLVQASANTILSHFLGLVFSLELLRSVTLPAAESIRIPQIA
Homology
BLAST of CmoCh11G013910 vs. ExPASy Swiss-Prot
Match: Q9SHU7 (Protein TIC 21, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC21 PE=1 SV=1) HSP 1 Score: 294.3 bits (752), Expect = 1.6e-78 Identity = 182/304 (59.87%), Postives = 220/304 (72.37%), Query Frame = 0
Query: 1 MQSLLLPVARTGAFPAAAVYSSDFHLSRFHCRPFSVRGRQASDLNSPSNSLPSLSAIRSS 60
MQSLLLP A + A A+ H F+ + S R + L +P P SS
Sbjct: 1 MQSLLLPPASSSGVSAVALRPGFQH--SFNHQSLSTR---SLPLFNPLLLAPKKKTTISS 60
Query: 61 SSSSSSLLLSKTFG-TLEHRRGKFCLETRASSSSISP-TVPPIDEAEKLKLAQVAKRLEK 120
S SL +G + + F T A S SP +VP +E +K KLAQVAKRLEK
Sbjct: 61 YQSPPSL---SVYGFQIGGSKPSFTPSTVAFSYPTSPSSVPGDNEVDKAKLAQVAKRLEK 120
Query: 121 TSRYFKRLGNLGFWGQLVLTVVAAVILSCSVVITGKITSPATFYATAGGIVAAFISVFWS 180
TSRYFKRLG++GFWGQLV TVVAAVILS S+V+TGK TSPATFYATA GI AAF+SVFWS
Sbjct: 121 TSRYFKRLGSIGFWGQLVSTVVAAVILSFSIVVTGKPTSPATFYATASGIAAAFVSVFWS 180
Query: 181 FGYIRLSGKLRRTANQPSKAPPRADVVNSLKNGIVMNLLGMGAAILGMQASVGLLVAKAL 240
FGYIRLS +LRRT+ P+KAPPRADVV L++GI++N+LGMG+A+LGMQA+VG LVAKAL
Sbjct: 181 FGYIRLSERLRRTSIDPAKAPPRADVVKGLRSGIMVNILGMGSALLGMQATVGFLVAKAL 240
Query: 241 TSSATPYFQAASPGNSPVLAWDVFLVQASANTILSHFLGLVFSLELLRSVTLPAAESIRI 300
T+SA P++Q S G SPVLA DVFLVQASANT+LSHFLGLV SLELLRSVT+P +ES+ +
Sbjct: 241 TTSANPFYQGVSQGYSPVLALDVFLVQASANTLLSHFLGLVCSLELLRSVTVPNSESVVV 296
Query: 301 PQIA 303
P++A
Sbjct: 301 PKVA 296
BLAST of CmoCh11G013910 vs. ExPASy TrEMBL
Match: A0A6J1EHS0 (protein TIC 21, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111434471 PE=4 SV=1) HSP 1 Score: 559.3 bits (1440), Expect = 9.8e-156 Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0
Query: 1 MQSLLLPVARTGAFPAAAVYSSDFHLSRFHCRPFSVRGRQASDLNSPSNSLPSLSAIRSS 60
MQSLLLPVARTGAFPAAAVYSSDFHLSRFHCRPFSVRGRQASDLNSPSNSLPSLSAIRSS
Sbjct: 1 MQSLLLPVARTGAFPAAAVYSSDFHLSRFHCRPFSVRGRQASDLNSPSNSLPSLSAIRSS 60
Query: 61 SSSSSSLLLSKTFGTLEHRRGKFCLETRASSSSISPTVPPIDEAEKLKLAQVAKRLEKTS 120
SSSSSSLLLSKTFGTLEHRRGKFCLETRASSSSISPTVPPIDEAEKLKLAQVAKRLEKTS
Sbjct: 61 SSSSSSLLLSKTFGTLEHRRGKFCLETRASSSSISPTVPPIDEAEKLKLAQVAKRLEKTS 120
Query: 121 RYFKRLGNLGFWGQLVLTVVAAVILSCSVVITGKITSPATFYATAGGIVAAFISVFWSFG 180
RYFKRLGNLGFWGQLVLTVVAAVILSCSVVITGKITSPATFYATAGGIVAAFISVFWSFG
Sbjct: 121 RYFKRLGNLGFWGQLVLTVVAAVILSCSVVITGKITSPATFYATAGGIVAAFISVFWSFG 180
Query: 181 YIRLSGKLRRTANQPSKAPPRADVVNSLKNGIVMNLLGMGAAILGMQASVGLLVAKALTS 240
YIRLSGKLRRTANQPSKAPPRADVVNSLKNGIVMNLLGMGAAILGMQASVGLLVAKALTS
Sbjct: 181 YIRLSGKLRRTANQPSKAPPRADVVNSLKNGIVMNLLGMGAAILGMQASVGLLVAKALTS 240
Query: 241 SATPYFQAASPGNSPVLAWDVFLVQASANTILSHFLGLVFSLELLRSVTLPAAESIRIPQ 300
SATPYFQAASPGNSPVLAWDVFLVQASANTILSHFLGLVFSLELLRSVTLPAAESIRIPQ
Sbjct: 241 SATPYFQAASPGNSPVLAWDVFLVQASANTILSHFLGLVFSLELLRSVTLPAAESIRIPQ 300
Query: 301 IA 303
IA
Sbjct: 301 IA 302
BLAST of CmoCh11G013910 vs. ExPASy TrEMBL
Match: A0A6J1JKS5 (protein TIC 21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111486084 PE=4 SV=1) HSP 1 Score: 523.1 bits (1346), Expect = 7.8e-145 Identity = 288/305 (94.43%), Postives = 291/305 (95.41%), Query Frame = 0
Query: 1 MQSLLLPVARTGAFPAAAVYSSDFHLSRFHCRPFSVRGRQASDLNSPSNSLPSLSAIR-- 60
MQSLL PV RTGAFPAAAVYSSDFHLS FHCRPFSVRGRQASDLNSP NSLPS SAIR
Sbjct: 1 MQSLLSPVPRTGAFPAAAVYSSDFHLSHFHCRPFSVRGRQASDLNSPPNSLPSFSAIRSS 60
Query: 61 -SSSSSSSSLLLSKTFGTLEHRRGKFCLETRASSSSISPTVPPIDEAEKLKLAQVAKRLE 120
SSSSSSSSLLLSKTFGTLEHRRG+FCLETRASSSSISPTVPPIDEAEKLKLAQVAKRLE
Sbjct: 61 SSSSSSSSSLLLSKTFGTLEHRRGQFCLETRASSSSISPTVPPIDEAEKLKLAQVAKRLE 120
Query: 121 KTSRYFKRLGNLGFWGQLVLTVVAAVILSCSVVITGKITSPATFYATAGGIVAAFISVFW 180
KTSRYFKRLGNLGFWGQLVLTVVAAVILS SVVITGKI SPATFYATAGGIVAAFISVFW
Sbjct: 121 KTSRYFKRLGNLGFWGQLVLTVVAAVILSFSVVITGKIISPATFYATAGGIVAAFISVFW 180
Query: 181 SFGYIRLSGKLRRTANQPSKAPPRADVVNSLKNGIVMNLLGMGAAILGMQASVGLLVAKA 240
SFGYIRLS KLRRTANQPSKAPPRADVVNSLKNGIVMNLLGMGAAILGMQA+VGLLVAKA
Sbjct: 181 SFGYIRLSDKLRRTANQPSKAPPRADVVNSLKNGIVMNLLGMGAAILGMQATVGLLVAKA 240
Query: 241 LTSSATPYFQAASPGNSPVLAWDVFLVQASANTILSHFLGLVFSLELLRSVTLPAAESIR 300
LTSSATPYFQAASPGNSPVLA DVFLVQASANTILSHFLGLVFSLELLRSVT+P AESI
Sbjct: 241 LTSSATPYFQAASPGNSPVLALDVFLVQASANTILSHFLGLVFSLELLRSVTIPVAESIH 300
Query: 301 IPQIA 303
IPQIA
Sbjct: 301 IPQIA 305
BLAST of CmoCh11G013910 vs. ExPASy TrEMBL
Match: A0A6J1D437 (protein TIC 21, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111017409 PE=4 SV=1) HSP 1 Score: 452.6 bits (1163), Expect = 1.3e-123 Identity = 256/305 (83.93%), Postives = 271/305 (88.85%), Query Frame = 0
Query: 1 MQSLLLPVARTGAFPAAAVYSSDFHLSRFHCRPFSVRGRQASDLNSPSNSLPSLSAIR-- 60
MQSLL PVA G + AAAVYSSD HLSRFH P S+ R AS+LNSP NS+PS++AIR
Sbjct: 1 MQSLLSPVAPAGPYSAAAVYSSDLHLSRFHRLPLSL--RHASNLNSPPNSIPSVNAIRSS 60
Query: 61 -SSSSSSSSLLLSKTFGTLEHRRGKFCLETRASSSSISPTVPPIDEAEKLKLAQVAKRLE 120
SSSSSSSSLL+ K FGTL +RRG FC ETRASSS ISPT PP DEAEK KLAQVAKRLE
Sbjct: 61 YSSSSSSSSLLILKAFGTLGNRRGLFCSETRASSSPISPTAPPNDEAEKAKLAQVAKRLE 120
Query: 121 KTSRYFKRLGNLGFWGQLVLTVVAAVILSCSVVITGKITSPATFYATAGGIVAAFISVFW 180
KTSRYFKRLGNLGFWGQLV T+V+AVILS SVVITGKITSPATFYATAG IVAAFISVFW
Sbjct: 121 KTSRYFKRLGNLGFWGQLVCTIVSAVILSFSVVITGKITSPATFYATAGSIVAAFISVFW 180
Query: 181 SFGYIRLSGKLRRTANQPSKAPPRADVVNSLKNGIVMNLLGMGAAILGMQASVGLLVAKA 240
SFGYIRLS KL RTANQPSKAPPRADVVNSL+NGIV+NLLGMGAAILGMQA+VGLLVAKA
Sbjct: 181 SFGYIRLSDKLLRTANQPSKAPPRADVVNSLRNGIVVNLLGMGAAILGMQATVGLLVAKA 240
Query: 241 LTSSATPYFQAASPGNSPVLAWDVFLVQASANTILSHFLGLVFSLELLRSVTLPAAESIR 300
LTSSA PY+Q ASPGNSPVLA DVFLVQASANTILSHFLGLVFSLELLRSVTLPAAESI
Sbjct: 241 LTSSAIPYYQGASPGNSPVLALDVFLVQASANTILSHFLGLVFSLELLRSVTLPAAESIP 300
Query: 301 IPQIA 303
IP+IA
Sbjct: 301 IPRIA 303
BLAST of CmoCh11G013910 vs. ExPASy TrEMBL
Match: A0A6J1GMQ4 (protein TIC 21, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111455377 PE=4 SV=1) HSP 1 Score: 452.6 bits (1163), Expect = 1.3e-123 Identity = 255/302 (84.44%), Postives = 268/302 (88.74%), Query Frame = 0
Query: 1 MQSLLLPVARTGAFPAAAVYSSDFHLSRFHCRPFSVRGRQASDLNSPSNSLPSLSAIRSS 60
MQSLL PV R G FP AAVY+S+ HLS F+ RPFSV R AS+L SP NSLPS SAIR
Sbjct: 1 MQSLLSPVGRGGPFPVAAVYTSELHLSCFNRRPFSV--RYASNLKSPPNSLPSFSAIR-- 60
Query: 61 SSSSSSLLLSKTFGTLEHRRGKFCLETRASSSSISPTVPPIDEAEKLKLAQVAKRLEKTS 120
SS SLLL K FGTLEHRRG+FC +T ASSS ISPTVPP DEAEK KLAQVAKRLEKTS
Sbjct: 61 PPSSFSLLLLKNFGTLEHRRGQFCSDTCASSSPISPTVPPNDEAEKAKLAQVAKRLEKTS 120
Query: 121 RYFKRLGNLGFWGQLVLTVVAAVILSCSVVITGKITSPATFYATAGGIVAAFISVFWSFG 180
RYFKRLGNLGFWGQLV T+VAAVILS SVV+TGKITSPATFYATAGGIVAAFISVFWSFG
Sbjct: 121 RYFKRLGNLGFWGQLVCTIVAAVILSFSVVVTGKITSPATFYATAGGIVAAFISVFWSFG 180
Query: 181 YIRLSGKLRRTANQPSKAPPRADVVNSLKNGIVMNLLGMGAAILGMQASVGLLVAKALTS 240
YIRLS KL+RTANQPSKAPPRADVVNSLKNGIV+NLLGMGAAILGMQA+VGLLVAKALTS
Sbjct: 181 YIRLSDKLQRTANQPSKAPPRADVVNSLKNGIVVNLLGMGAAILGMQATVGLLVAKALTS 240
Query: 241 SATPYFQAASPGNSPVLAWDVFLVQASANTILSHFLGLVFSLELLRSVTLPAAESIRIPQ 300
SA PY+Q ASPGNSPVLA DVFLVQASANTILSHFLGLVFSLELLRSVTLPA ESI IP+
Sbjct: 241 SAIPYYQGASPGNSPVLALDVFLVQASANTILSHFLGLVFSLELLRSVTLPATESIPIPR 298
Query: 301 IA 303
IA
Sbjct: 301 IA 298
BLAST of CmoCh11G013910 vs. ExPASy TrEMBL
Match: A0A5A7SP50 (Protein TIC 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00960 PE=4 SV=1) HSP 1 Score: 451.8 bits (1161), Expect = 2.2e-123 Identity = 259/308 (84.09%), Postives = 269/308 (87.34%), Query Frame = 0
Query: 1 MQSLLLPVARTGAF-PAAAVYSSDFHLSRFHCRPFSVRGRQASDLNSPSNSLPSLSAI-- 60
MQSLL PVARTG F P AAVYSSDFHLSR H RPFSVR NSLP SAI
Sbjct: 1 MQSLLSPVARTGPFPPTAAVYSSDFHLSRLHRRPFSVR--------HSFNSLPQFSAISS 60
Query: 61 ---RSSSSSSSSLLLSKTFGTLEHRRGKFCLETRASSSSISPTVPPIDEAEKLKLAQVAK 120
SSSSSSSSLLL KTFGTLEHRRG+ C ETRASSS ISPTVPP DEAEK KLAQVAK
Sbjct: 61 SSSSSSSSSSSSLLLLKTFGTLEHRRGQLCSETRASSSPISPTVPPNDEAEKAKLAQVAK 120
Query: 121 RLEKTSRYFKRLGNLGFWGQLVLTVVAAVILSCSVVITGKITSPATFYATAGGIVAAFIS 180
RLEKTSRYFKRLG+LGFWGQLV T+VAAVILS SVVITGKI SPATFYATAGGIVAAFIS
Sbjct: 121 RLEKTSRYFKRLGSLGFWGQLVCTIVAAVILSFSVVITGKIASPATFYATAGGIVAAFIS 180
Query: 181 VFWSFGYIRLSGKLRRTANQPSKAPPRADVVNSLKNGIVMNLLGMGAAILGMQASVGLLV 240
VFWSFGYIRLS KL+RTANQPSKAPPRADVVNSL+NGIV+NLLGMGAAILGMQA+VGLLV
Sbjct: 181 VFWSFGYIRLSDKLQRTANQPSKAPPRADVVNSLRNGIVVNLLGMGAAILGMQATVGLLV 240
Query: 241 AKALTSSATPYFQAASPGNSPVLAWDVFLVQASANTILSHFLGLVFSLELLRSVTLPAAE 300
AKALTSSA PY+QAASPGNSPVLA DVFLVQASANTILSHFLGLVFSLELLRSVTLPA +
Sbjct: 241 AKALTSSAIPYYQAASPGNSPVLALDVFLVQASANTILSHFLGLVFSLELLRSVTLPATD 300
Query: 301 SIRIPQIA 303
SI IP+IA
Sbjct: 301 SIPIPRIA 300
BLAST of CmoCh11G013910 vs. TAIR 10
Match: AT2G15290.1 (translocon at inner membrane of chloroplasts 21 ) HSP 1 Score: 294.3 bits (752), Expect = 1.1e-79 Identity = 182/304 (59.87%), Postives = 220/304 (72.37%), Query Frame = 0
Query: 1 MQSLLLPVARTGAFPAAAVYSSDFHLSRFHCRPFSVRGRQASDLNSPSNSLPSLSAIRSS 60
MQSLLLP A + A A+ H F+ + S R + L +P P SS
Sbjct: 1 MQSLLLPPASSSGVSAVALRPGFQH--SFNHQSLSTR---SLPLFNPLLLAPKKKTTISS 60
Query: 61 SSSSSSLLLSKTFG-TLEHRRGKFCLETRASSSSISP-TVPPIDEAEKLKLAQVAKRLEK 120
S SL +G + + F T A S SP +VP +E +K KLAQVAKRLEK
Sbjct: 61 YQSPPSL---SVYGFQIGGSKPSFTPSTVAFSYPTSPSSVPGDNEVDKAKLAQVAKRLEK 120
Query: 121 TSRYFKRLGNLGFWGQLVLTVVAAVILSCSVVITGKITSPATFYATAGGIVAAFISVFWS 180
TSRYFKRLG++GFWGQLV TVVAAVILS S+V+TGK TSPATFYATA GI AAF+SVFWS
Sbjct: 121 TSRYFKRLGSIGFWGQLVSTVVAAVILSFSIVVTGKPTSPATFYATASGIAAAFVSVFWS 180
Query: 181 FGYIRLSGKLRRTANQPSKAPPRADVVNSLKNGIVMNLLGMGAAILGMQASVGLLVAKAL 240
FGYIRLS +LRRT+ P+KAPPRADVV L++GI++N+LGMG+A+LGMQA+VG LVAKAL
Sbjct: 181 FGYIRLSERLRRTSIDPAKAPPRADVVKGLRSGIMVNILGMGSALLGMQATVGFLVAKAL 240
Query: 241 TSSATPYFQAASPGNSPVLAWDVFLVQASANTILSHFLGLVFSLELLRSVTLPAAESIRI 300
T+SA P++Q S G SPVLA DVFLVQASANT+LSHFLGLV SLELLRSVT+P +ES+ +
Sbjct: 241 TTSANPFYQGVSQGYSPVLALDVFLVQASANTLLSHFLGLVCSLELLRSVTVPNSESVVV 296
Query: 301 PQIA 303
P++A
Sbjct: 301 PKVA 296
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Q9SHU7 | 1.6e-78 | 59.87 | Protein TIC 21, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC21 PE=1 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1EHS0 | 9.8e-156 | 100.00 | protein TIC 21, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111434471... | [more] |
| A0A6J1JKS5 | 7.8e-145 | 94.43 | protein TIC 21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111486084 P... | [more] |
| A0A6J1D437 | 1.3e-123 | 83.93 | protein TIC 21, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111017409 PE=... | [more] |
| A0A6J1GMQ4 | 1.3e-123 | 84.44 | protein TIC 21, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111455377 PE=4... | [more] |
| A0A5A7SP50 | 2.2e-123 | 84.09 | Protein TIC 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00960 ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT2G15290.1 | 1.1e-79 | 59.87 | translocon at inner membrane of chloroplasts 21 | [more] |
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR022051 | Protein of unknown function DUF3611 | PFAM | PF12263 | DUF3611 | coord: 114..288
e-value: 2.0E-52
score: 177.6 |
| IPR022051 | Protein of unknown function DUF3611 | PANTHER | PTHR34548 | PROTEIN TIC 21, CHLOROPLASTIC | coord: 1..300 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
|
