CmoCh11G012370 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G012370
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	transcription initiation factor TFIID subunit 15-like
Location	Cmo_Chr11: 7687291 .. 7691104 (-)
RNA-Seq Expression	CmoCh11G012370
Synteny	CmoCh11G012370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAAATAAAAAAAAAAATAACAGAGTGCAGAAATCAAAATCTGAGATTGTCGAAGCCTCAGCACGGAACTCAGGTAACCCTATCGCTCCTCTTCTTCTCCATTCCTACGTCTATTCCCCGACTTCTCATCCGCTCTCTCCACTACCCATGATTCAATCACCATTCATCCTTCCAACATTTCTGCAATTTGGCTACAATTTCCCTTTCTTCCTTTACTTTCTTACCCTAATCTTTCGCTTTGCTCGCCTGCCCACTGTTTTCTTTGTTTTCCTCTCTGCTTTTCCACTTGAGATCTATATTTTTGTAACCCATGTCGCCTCCTGCACGATGACTTATACGTTTCTCATGGGGTTTTCTAGAGATTTTAATTGACTATATAGTTCGCTTGATCTAAACTGGCCCATCTTTTGTGTAGATCTTAATATTGATTTCATGAAAATTGGTGAATAATGGCAAGCTATGCGGGTAAAGGAGCCCTCTCCAATGGATCTGTTTACATCTGCAACCTGCCCTTTGGGACTGATGAGAATATGCTTGCGGAATATTTTGGTACAATTGGGTTATTGAAGGTTGGGAGTTTAACCACAATTTTGTTGGCCCTTTTTCACTTTCTATACACATTGGATTTTGCTTTTATTGTTCTTATAATAACTGTTGGACATTTTTTGCTTAATCTTCAAAGAAAGACAAGCGAACAGGTAGACCGAAAATCTGGTTGTATCGCGATAAATCGACGAATGAGCCTAAAGGAGATGCTACTGTGACATATGAGGATCCACATGCAGCTTTAGCAGCTGTTGAATGGTTTGACAATAAGGATTTTCATGGTAACATCATTGAAGTTCATATAGCAGAGTCCAAAAGTAAAGATGATGTCTCGTTTAATGTGGGGGTCGATCCGATTGTTGTTGCTGATACTCTTGATTTTGAGGAAAATGTTGGGGGTGGTATGAACGGGGGCGGTGGAAGGGGGAGAGGTCGCGGTGATGCTCCTCCAGGAAAAGCATGGCAACAAGAGGGAGATTGGCTGTGTCCAAATACAAGGTCTGTGATGTGATATTGGTGAGCAGCTTCTTCTTGCTTCTTTCAATCTTGGCTGGATTCTATGTTCTATTTAGTGTTGTTGAAATGGTTTCTCATGCTCTATCCTACTGGCAGTTGTACCAATGTTAATTTTGCATTTCGTGGTGTGTGTAACCGGTGTGGAAGTGCCCGACCTTCTGGTGCTGCTGGCAGTGGTGCAGGCTCTATAGGTCGTGGCAGGGGCCGTGGCACTGGCAACCAGGAATCAGGAAGCAATAGTCGTCCAGTTGGTGGCCCTACTGGTCTCTTTGGTCCAAATGACTGGCCGTGTCCAATGTAAATATAATCTTCCTTTACTTATATGCCATCGCCATATTATGCGTCCATTAGTTTTAGCTTCGAGTCTAATTTTGTAAAACCTACCAAATTACTTGGTTTATTTTTTCAATGCAACTATACGGATCAAAGTAGATTATATTGACGTTTTAAAAAGAATAAAAAGATGGATTATATATAGTTAGAAGATATAATCACACATCCAAAGGAAAAGAAAAAAGGCGAAGAAGATGATTCGGTGTAGAATCAAACGACAGGAAGTTCATTTCAATATTGGATTTCACACATCTTTTTATCCACCCTTTACTTTTGGTTTAATCTTATGGAATAGAATAAGCATTAAAGACAGTGACACATCTGAATTTATGAAGTTATCTTGCTTTACATGGTTACTTTCTTGTTTCTTTCAGAATGTGTTCTTTTAATTAAATATTTTGAATATCATGGGATGGGGAATGTGATGTCCCACGTTGGTTGGGGAGGATAACAAATCACCCTTTATAAGGGTGTGGAAACCTTTCCCTAGCAGATGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTGGCGGTGGATCTAGGTCGTTACAAATGGTATCAGAGCCAGTCACCGGACGATGTGCCGGCCTTCTCGCTGTTCCCTGAAGGGGGTAGACACGAGGCGGTGTGCCAGTAAGGACGTTGGGCTCCAAAGGGAGTGGATTTGGGGGCAGTCCCACATCGATTGGATAAAGGAACGAGCGCCAACGAGAACGCTGGGCCCCGAAGGGGGGTGGATTGTGATGTCCCACATTGGTTGGGGAGGAGAACAAATCACCCTTTATAAGGGTGTGGAAACCTTCCCCTAGCAGACAGCTTTGAGGAGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATTTGCTAGCGGTGAATCTGGGTCGTTACAGGGAAAGGAGGCATCTCTAATGTTAATGTTAATTTGAAGTTTCGGGAGAAGTGTTCTATCGTACGGTTATTTGTTTCTTTAATCTTGTTCTCTGCTTGGATAACACTGCTTGCTTGTGTAACTGGTTGATATTGGTGGTTCCTTCTGCTTTATGTTCCAGGTGTGGTAACATCAATTGGGCAAAGCGCTCGAAATGCAATATTTGTAACACGAACAAACCGGGTCACAATGAGGGTGGCGTGAGGTATAACATGAACTCTTTTGTGTATTTCCCAAGAGAAATAATGCCACTTTTTATTTGATCAAAATATGCTCTAGGCTTTTCTAATAAATTGATGTGAATTTGACTTTTGAGACTGAGTTCTGAGCTTAATCAATTAAATTTGAAGCAAATTTATGGTTCATCTGCAGTATCCTGAACTTTAATTTTGGTATATCTTGGAATAGCTTAGAAACTGGAAATCTATACTTGTTGTTACTACCCTGAAATGAATACTTACAGCCTACAACAAAATTTCTCTTATTTTGAATTATAATTGAACAGAGGTGGGCGGGGTGGAGGTTACAAAGAACTTGATGAAGAAGAGTTGGAGGAGACTAAACGACGTCGGCGTGAAGCTGAAGAAGTAAGATGCTGAAACCATGATTTTGAGAAAACGAAAACAGTTTTTGGATTGTGATATGATCGTTTCATTACAATATCAGGATGATGGTGAGATGTATGACGAGTTTGGAAACCTTAAGAAGAAGTTTCGAGCCAAATCCCAGCAAATGGAAGCCGGTCAGATAATACCAGGTGCTGGGCGGGCTGGATGGGAATTCGAAGAACTAGGTACGTGTCGGTTGACTAACACCGTGCTATTGTCCTCGGAAAATCGTTGATAATTCTTTGTGCTATTGATTACGTATTTACATCTTTGGCAAACTTACATTTTCAGGTGTAGTTGAGAAGGATAGAAGGGAGAGAAGTAGAGACCAAGGAAGGGAATGGAATGACAGAGACAGAGACCGAGACCGAGATGGTAGCAGAAATAAAGAAAGAGAACCTAGGGAAAGACATCGGAGTCGAAGCAGAGAGCGGGACAGGGGTCGAGATCGTGATCGTGATCGAGATCGAGATCGAGACTATGATTTCGAGCGAGATAAAGAACATGGAAGGGAGAAGGAGCACCGGAGCAGGCACCGGTATTGAAGACCTTGGATTAAAACTTTATGGCAGAACCTGGTGGGTCTCATTTTTTATGAAAGATATTCTATTTTTGGTATTATTGTGATTACATCTTCTTGGCGCTTTTAAGAATTCTATCAGAATACGAATTGAATTTGCAAAGCAATTGGAATTGTTTGGCTGCCTTTTCACCACTAACTCCAAACTTGTAATCAAGTTCACAGATTAGCAAACTTAGGCAATCTTATTTATATGTACACGACTCTCGAAAATATTTATATGTACACTACTCTCGAAAATAGACATGAGAAATTGAAAAACACA

mRNA sequence

AAAAAAAAAAAAAAAAATAAAAAAAAAAATAACAGAGTGCAGAAATCAAAATCTGAGATTGTCGAAGCCTCAGCACGGAACTCAGATCTTAATATTGATTTCATGAAAATTGGTGAATAATGGCAAGCTATGCGGGTAAAGGAGCCCTCTCCAATGGATCTGTTTACATCTGCAACCTGCCCTTTGGGACTGATGAGAATATGCTTGCGGAATATTTTGGTACAATTGGGTTATTGAAGAAAGACAAGCGAACAGGTAGACCGAAAATCTGGTTGTATCGCGATAAATCGACGAATGAGCCTAAAGGAGATGCTACTGTGACATATGAGGATCCACATGCAGCTTTAGCAGCTGTTGAATGGTTTGACAATAAGGATTTTCATGGTAACATCATTGAAGTTCATATAGCAGAGTCCAAAAGTAAAGATGATGTCTCGTTTAATGTGGGGGTCGATCCGATTGTTGTTGCTGATACTCTTGATTTTGAGGAAAATGTTGGGGGTGGTATGAACGGGGGCGGTGGAAGGGGGAGAGGTCGCGGTGATGCTCCTCCAGGAAAAGCATGGCAACAAGAGGGAGATTGGCTGTGTCCAAATACAAGTTGTACCAATGTTAATTTTGCATTTCGTGGTGTGTGTAACCGGTGTGGAAGTGCCCGACCTTCTGGTGCTGCTGGCAGTGGTGCAGGCTCTATAGGTCGTGGCAGGGGCCGTGGCACTGGCAACCAGGAATCAGGAAGCAATAGTCGTCCAGTTGGTGGCCCTACTGGTCTCTTTGGTCCAAATGACTGGCCGTGTCCAATGTGTGGTAACATCAATTGGGCAAAGCGCTCGAAATGCAATATTTGTAACACGAACAAACCGGGTCACAATGAGGGTGGCGTGAGAGGTGGGCGGGGTGGAGGTTACAAAGAACTTGATGAAGAAGAGTTGGAGGAGACTAAACGACGTCGGCGTGAAGCTGAAGAAGATGATGGTGAGATGTATGACGAGTTTGGAAACCTTAAGAAGAAGTTTCGAGCCAAATCCCAGCAAATGGAAGCCGGTCAGATAATACCAGGTGCTGGGCGGGCTGGATGGGAATTCGAAGAACTAGGTGTAGTTGAGAAGGATAGAAGGGAGAGAAGTAGAGACCAAGGAAGGGAATGGAATGACAGAGACAGAGACCGAGACCGAGATGGTAGCAGAAATAAAGAAAGAGAACCTAGGGAAAGACATCGGAGTCGAAGCAGAGAGCGGGACAGGGGTCGAGATCGTGATCGTGATCGAGATCGAGATCGAGACTATGATTTCGAGCGAGATAAAGAACATGGAAGGGAGAAGGAGCACCGGAGCAGGCACCGGTATTGAAGACCTTGGATTAAAACTTTATGGCAGAACCTGGTGGGTCTCATTTTTTATGAAAGATATTCTATTTTTGGTATTATTGTGATTACATCTTCTTGGCGCTTTTAAGAATTCTATCAGAATACGAATTGAATTTGCAAAGCAATTGGAATTGTTTGGCTGCCTTTTCACCACTAACTCCAAACTTGTAATCAAGTTCACAGATTAGCAAACTTAGGCAATCTTATTTATATGTACACGACTCTCGAAAATATTTATATGTACACTACTCTCGAAAATAGACATGAGAAATTGAAAAACACA

Coding sequence (CDS)

ATGGCAAGCTATGCGGGTAAAGGAGCCCTCTCCAATGGATCTGTTTACATCTGCAACCTGCCCTTTGGGACTGATGAGAATATGCTTGCGGAATATTTTGGTACAATTGGGTTATTGAAGAAAGACAAGCGAACAGGTAGACCGAAAATCTGGTTGTATCGCGATAAATCGACGAATGAGCCTAAAGGAGATGCTACTGTGACATATGAGGATCCACATGCAGCTTTAGCAGCTGTTGAATGGTTTGACAATAAGGATTTTCATGGTAACATCATTGAAGTTCATATAGCAGAGTCCAAAAGTAAAGATGATGTCTCGTTTAATGTGGGGGTCGATCCGATTGTTGTTGCTGATACTCTTGATTTTGAGGAAAATGTTGGGGGTGGTATGAACGGGGGCGGTGGAAGGGGGAGAGGTCGCGGTGATGCTCCTCCAGGAAAAGCATGGCAACAAGAGGGAGATTGGCTGTGTCCAAATACAAGTTGTACCAATGTTAATTTTGCATTTCGTGGTGTGTGTAACCGGTGTGGAAGTGCCCGACCTTCTGGTGCTGCTGGCAGTGGTGCAGGCTCTATAGGTCGTGGCAGGGGCCGTGGCACTGGCAACCAGGAATCAGGAAGCAATAGTCGTCCAGTTGGTGGCCCTACTGGTCTCTTTGGTCCAAATGACTGGCCGTGTCCAATGTGTGGTAACATCAATTGGGCAAAGCGCTCGAAATGCAATATTTGTAACACGAACAAACCGGGTCACAATGAGGGTGGCGTGAGAGGTGGGCGGGGTGGAGGTTACAAAGAACTTGATGAAGAAGAGTTGGAGGAGACTAAACGACGTCGGCGTGAAGCTGAAGAAGATGATGGTGAGATGTATGACGAGTTTGGAAACCTTAAGAAGAAGTTTCGAGCCAAATCCCAGCAAATGGAAGCCGGTCAGATAATACCAGGTGCTGGGCGGGCTGGATGGGAATTCGAAGAACTAGGTGTAGTTGAGAAGGATAGAAGGGAGAGAAGTAGAGACCAAGGAAGGGAATGGAATGACAGAGACAGAGACCGAGACCGAGATGGTAGCAGAAATAAAGAAAGAGAACCTAGGGAAAGACATCGGAGTCGAAGCAGAGAGCGGGACAGGGGTCGAGATCGTGATCGTGATCGAGATCGAGATCGAGACTATGATTTCGAGCGAGATAAAGAACATGGAAGGGAGAAGGAGCACCGGAGCAGGCACCGGTATTGA

Protein sequence

MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTLDFEENVGGGMNGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKCNICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRAKSQQMEAGQIIPGAGRAGWEFEELGVVEKDRRERSRDQGREWNDRDRDRDRDGSRNKEREPRERHRSRSRERDRGRDRDRDRDRDRDYDFERDKEHGREKEHRSRHRY

Homology

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BLAST of CmoCh11G012370 vs. ExPASy Swiss-Prot
Match: Q9AST1 (Transcription initiation factor TFIID subunit 15 OS=Arabidopsis thaliana OX=3702 GN=TAF15 PE=1 SV=1)

HSP 1 Score: 478.0 bits (1229), Expect = 1.1e-133
Identity = 268/402 (66.67%), Postives = 307/402 (76.37%), Query Frame = 0


Query: 8   GALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNEPKGDATV 67
           G  +NGSVY+ NLP GTDENMLA+YFGTIGLLK+DKRTG PK+WLYRDK T+EPKGDATV
Sbjct: 3   GYPTNGSVYVSNLPLGTDENMLADYFGTIGLLKRDKRTGTPKVWLYRDKETDEPKGDATV 62

Query: 68  TYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTLDFEENVG 127
           TYEDPHAALAAVEWF+NKDFHGN I V +AESK+K+              D ++F E  G
Sbjct: 63  TYEDPHAALAAVEWFNNKDFHGNTIGVFMAESKNKN------------AGDAVEFVEFDG 122

Query: 128 GG--MNGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSARPSGAA 187
           G    NGG GRGRG+ D+   K WQQ+GDW+CPNTSCTNVNFAFRGVCNRCG+ARP+GA+
Sbjct: 123 GAEETNGGAGRGRGQADS-SAKPWQQDGDWMCPNTSCTNVNFAFRGVCNRCGTARPAGAS 182

Query: 188 GSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKCNICNT 247
           G   G+ GRGRGRG G        +P G PTGLFGPNDW CPMCGN+NWAKR KCNICNT
Sbjct: 183 GGSMGA-GRGRGRGGGADGGAPGKQPSGAPTGLFGPNDWACPMCGNVNWAKRLKCNICNT 242

Query: 248 NKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRAKSQQ 307
           NKPG NEGGVRGGRGGGYKELDE+ELEETKRRRREAEEDDGEMYDEFGNLKKK+R K+ Q
Sbjct: 243 NKPGQNEGGVRGGRGGGYKELDEQELEETKRRRREAEEDDGEMYDEFGNLKKKYRVKTNQ 302

Query: 308 MEAGQIIPGAGRAGWEFEELGVVEKDRRERSRDQGREWNDRDRDRDRDGSRNKEREPRER 367
            +    +  AGRAGWE EELG ++KD RERSR       DR RDR RD   +K     +R
Sbjct: 303 ADTRPAV-AAGRAGWEVEELG-IDKDGRERSR-------DRQRDRGRDHHYDK-----DR 362

Query: 368 HRSRSRERDRGRDRDRDRDRDRDYDFERDKEHGREKEHRSRH 408
            RSRSRER+RG++RD D D DRD    RD+++GRE+  R R+
Sbjct: 363 RRSRSRERERGKERDYDYDHDRD----RDRDYGRERGSRYRN 372

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BLAST of CmoCh11G012370 vs. ExPASy Swiss-Prot
Match: Q92804 (TATA-binding protein-associated factor 2N OS=Homo sapiens OX=9606 GN=TAF15 PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.6e-31
Identity = 96/262 (36.64%), Postives = 132/262 (50.38%), Query Frame = 0


Query: 12  NGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNEPKGDATVTYED 71
           N ++++  L  G   + + E+F  IG++K +K+TG+P I LY DK T +PKG+ATV+++D
Sbjct: 233 NNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDD 292

Query: 72  PHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTLDFEENVGGGMN 131
           P +A AA++WFD K+FHGNII+V  A  +                       E + GG +
Sbjct: 293 PPSAKAAIDWFDGKEFHGNIIKVSFATRR----------------------PEFMRGGGS 352

Query: 132 GGGGRG----RGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSARPSGAAGS 191
           GGG RG    RGRG         + GDW+CPN SC N+NFA R  CN+C   RP  +  S
Sbjct: 353 GGGRRGRGGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPS 412

Query: 192 GAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKCNICNTNK 251
           G    GRG G   G +  G      GG  G +G +       G      RS     + ++
Sbjct: 413 GGDFRGRGYGGERGYRGRGGR----GGDRGGYGGD-----RSGGGYGGDRSSGGGYSGDR 463

Query: 252 PGHNEGGVRGG------RGGGY 264
            G   GG R G      RGGGY
Sbjct: 473 SGGGYGGDRSGGGYGGDRGGGY 463

[Close]

BLAST of CmoCh11G012370 vs. ExPASy Swiss-Prot
Match: Q27294 (RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 3.7e-30
Identity = 100/283 (35.34%), Postives = 135/283 (47.70%), Query Frame = 0


Query: 14  SVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPH 73
           ++++  +   T E  +  +FG IG++KKDKRT +PKIWLY++K T   KG+ATVTY+D +
Sbjct: 121 TIFVSGMDPSTTEQDIETHFGAIGIIKKDKRTMKPKIWLYKNKETGASKGEATVTYDDTN 180

Query: 74  AALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTLDFEENVGGGMNGG 133
           AA +A+EWFD +DF+GN I+V +A+ ++  +     G                GGG  GG
Sbjct: 181 AAQSAIEWFDGRDFNGNAIKVSLAQRQNNWNKGGGGGGGGGGRGGFGGRRGGGGGGGGGG 240

Query: 134 GGRGR-----------------GRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRC 193
           GG GR                 G G    G    ++GDW C   SC N NFA+R  CNRC
Sbjct: 241 GGGGRFDRGGGGGGGRYDRGGGGGGGGGGGNVQPRDGDWKC--NSCNNTNFAWRNECNRC 300

Query: 194 --------GSARPSGAAGSGAGSIG----RGRGRGTG-----NQESGSNSRPVGGPTGLF 253
                   GS+   G  G G G  G    RG  RG+G     N++ G NS+  GG  G  
Sbjct: 301 KTPKGDDEGSSGGGGGGGYGGGGGGGGYDRGNDRGSGGGGYHNRDRGGNSQGGGGGGGGG 360

Query: 254 GPNDWPCPMCGNINWAKRSKCNICNTNKPGHNEGGVRGGRGGG 263
           G                         ++   N GG RGGRGGG
Sbjct: 361 G-----------------------GYSRFNDNNGGGRGGRGGG 378

[Close]

BLAST of CmoCh11G012370 vs. ExPASy Swiss-Prot
Match: P56959 (RNA-binding protein FUS OS=Mus musculus OX=10090 GN=Fus PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.0e-28
Identity = 80/225 (35.56%), Postives = 115/225 (51.11%), Query Frame = 0


Query: 12  NGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNEPKGDATVTYED 71
           N ++++  L        +A+YF  IG++K +K+TG+P I LY D+ T + KG+ATV+++D
Sbjct: 277 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDD 336

Query: 72  PHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTLDFEENVGGGMN 131
           P +A AA++WFD K+F GN I+V  A  ++  +     G         +      GGG +
Sbjct: 337 PPSAKAAIDWFDGKEFSGNPIKVSFATRRADFNRGGGNGRGGRGRGGPMG-RGGYGGGGS 396

Query: 132 GGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSARPSGAAGS---- 191
           GGGGRG        G   Q+ GDW CPN +C N+NF++R  CN+C + +P G  G     
Sbjct: 397 GGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGS 456

Query: 192 -----------GAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGP 222
                      G G   RG  RG G    G      GG  G FGP
Sbjct: 457 HMGGNYGDDRRGRGGYDRGGYRGRGGDRGGFRGGRGGGDRGGFGP 500

[Close]

BLAST of CmoCh11G012370 vs. ExPASy Swiss-Prot
Match: Q28009 (RNA-binding protein FUS OS=Bos taurus OX=9913 GN=FUS PE=2 SV=2)

HSP 1 Score: 127.9 bits (320), Expect = 2.7e-28
Identity = 80/226 (35.40%), Postives = 115/226 (50.88%), Query Frame = 0


Query: 12  NGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNEPKGDATVTYED 71
           N ++++  L        +A+YF  IG++K +K+TG+P I LY D+ T + KG+ATV+++D
Sbjct: 271 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDD 330

Query: 72  PHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTLDFEENVGGGMN 131
           P +A AA++WFD K+F GN I+V  A  ++  +     G         +      GGG +
Sbjct: 331 PPSAKAAIDWFDGKEFSGNPIKVSFATRRADFNRGGGNGRGGRGRGGPMG-RGGYGGGGS 390

Query: 132 GGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSARPSGAAG----- 191
           GGGGRG        G   Q+ GDW CPN +C N+NF++R  CN+C + +P G  G     
Sbjct: 391 GGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGPGGGPGGS 450

Query: 192 -----------SGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGP 222
                       G G   RG  RG G    G      GG  G FGP
Sbjct: 451 HMGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGGDRGGFGP 495

[Close]

BLAST of CmoCh11G012370 vs. ExPASy TrEMBL
Match: A0A6J1EUE8 (transcription initiation factor TFIID subunit 15-like OS=Cucurbita moschata OX=3662 GN=LOC111437859 PE=4 SV=1)

HSP 1 Score: 805.4 bits (2079), Expect = 1.1e-229
Identity = 409/409 (100.00%), Postives = 409/409 (100.00%), Query Frame = 0


Query: 1   MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60
           MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE
Sbjct: 1   MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60

Query: 61  PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTL 120
           PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTL
Sbjct: 61  PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTL 120

Query: 121 DFEENVGGGMNGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR 180
           DFEENVGGGMNGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR
Sbjct: 121 DFEENVGGGMNGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR 180

Query: 181 PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC 240
           PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC
Sbjct: 181 PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC 240

Query: 241 NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFR 300
           NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFR
Sbjct: 241 NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFR 300

Query: 301 AKSQQMEAGQIIPGAGRAGWEFEELGVVEKDRRERSRDQGREWNDRDRDRDRDGSRNKER 360
           AKSQQMEAGQIIPGAGRAGWEFEELGVVEKDRRERSRDQGREWNDRDRDRDRDGSRNKER
Sbjct: 301 AKSQQMEAGQIIPGAGRAGWEFEELGVVEKDRRERSRDQGREWNDRDRDRDRDGSRNKER 360

Query: 361 EPRERHRSRSRERDRGRDRDRDRDRDRDYDFERDKEHGREKEHRSRHRY 410
           EPRERHRSRSRERDRGRDRDRDRDRDRDYDFERDKEHGREKEHRSRHRY
Sbjct: 361 EPRERHRSRSRERDRGRDRDRDRDRDRDYDFERDKEHGREKEHRSRHRY 409

[Close]

BLAST of CmoCh11G012370 vs. ExPASy TrEMBL
Match: A0A6J1I1S4 (transcription initiation factor TFIID subunit 15-like OS=Cucurbita maxima OX=3661 GN=LOC111468746 PE=4 SV=1)

HSP 1 Score: 775.4 bits (2001), Expect = 1.2e-220
Identity = 398/409 (97.31%), Postives = 399/409 (97.56%), Query Frame = 0


Query: 1   MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60
           MASYAGKGALSNGSVYICNLP GTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE
Sbjct: 1   MASYAGKGALSNGSVYICNLPIGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60

Query: 61  PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTL 120
           PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVV DTL
Sbjct: 61  PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVGDTL 120

Query: 121 DFEENVGGGMNGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR 180
           DFEENVG GMNGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR
Sbjct: 121 DFEENVGDGMNGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR 180

Query: 181 PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC 240
           PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC
Sbjct: 181 PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC 240

Query: 241 NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFR 300
           NICNTNKPGHNEGGVRGGRGGGYKELDEEELEE KRRRREAEEDDGEMYDEFGNLKKKFR
Sbjct: 241 NICNTNKPGHNEGGVRGGRGGGYKELDEEELEEIKRRRREAEEDDGEMYDEFGNLKKKFR 300

Query: 301 AKSQQMEAGQIIPGAGRAGWEFEELGVVEKDRRERSRDQGREWNDRDRDRDRDGSRNKER 360
           AKSQQMEAGQIIPGAGRAGWEFEELGVVEKDRRERSRDQGREWN  DRDRDRDGSRNKER
Sbjct: 301 AKSQQMEAGQIIPGAGRAGWEFEELGVVEKDRRERSRDQGREWN--DRDRDRDGSRNKER 360

Query: 361 EPRERHRSRSRERDRGRDRDRDRDRDRDYDFERDKEHGREKEHRSRHRY 410
           EPRERHRSRSRERDRG    RDRDRDR+YDFERDKEHGREKEHRSRHRY
Sbjct: 361 EPRERHRSRSRERDRG----RDRDRDREYDFERDKEHGREKEHRSRHRY 403

[Close]

BLAST of CmoCh11G012370 vs. ExPASy TrEMBL
Match: A0A6J1DG70 (transcription initiation factor TFIID subunit 15 OS=Momordica charantia OX=3673 GN=LOC111019801 PE=4 SV=1)

HSP 1 Score: 690.3 bits (1780), Expect = 5.0e-195
Identity = 358/409 (87.53%), Postives = 379/409 (92.67%), Query Frame = 0


Query: 1   MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60
           MASY GKGA SNGS+YICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDK TNE
Sbjct: 1   MASYPGKGAPSNGSIYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKLTNE 60

Query: 61  PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTL 120
           PKGDATVTYEDPHAALAAVEWF+NKDFHGNIIEVHIAESKSKDD+S+NV  DP VV D+L
Sbjct: 61  PKGDATVTYEDPHAALAAVEWFNNKDFHGNIIEVHIAESKSKDDLSYNVVGDPSVVDDSL 120

Query: 121 DFEENVGGGMNGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR 180
            FEEN  G MNGG GRGRGRGD  PGKAWQQEGDWLCPNTSC+NVNFAFRGVCNRCGSAR
Sbjct: 121 GFEEN-AGSMNGGSGRGRGRGDT-PGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSAR 180

Query: 181 PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC 240
           PSGAAGSGAGSIGRGRGR  GNQ+SG NSRPVGGPTGLFGPNDWPCPMCGNINWAKR+KC
Sbjct: 181 PSGAAGSGAGSIGRGRGR--GNQDSGGNSRPVGGPTGLFGPNDWPCPMCGNINWAKRTKC 240

Query: 241 NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFR 300
           NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFR
Sbjct: 241 NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFR 300

Query: 301 AKSQQMEAGQIIPGAGRAGWEFEELGVVEKDRRERSRDQGREWNDRDRDRDRDGSRNKER 360
           AKSQQMEAG+I+PGAGRAGWE EELGV+EKDRRERSR++GREW+      DRD SRN+ER
Sbjct: 301 AKSQQMEAGRILPGAGRAGWEVEELGVIEKDRRERSRERGREWD------DRDSSRNRER 360

Query: 361 EPRERHRSRSRERDRGRDRDRDRDRDRDYDFERDKEHGREKEHRSRHRY 410
           E RERHRSRSR+RDRG    RDRDRDRDYD+ERD+E+GREK+HR+RHRY
Sbjct: 361 ENRERHRSRSRDRDRG----RDRDRDRDYDYERDREYGREKDHRNRHRY 395

[Close]

BLAST of CmoCh11G012370 vs. ExPASy TrEMBL
Match: A0A6J1F8E5 (transcription initiation factor TFIID subunit 15-like OS=Cucurbita moschata OX=3662 GN=LOC111441809 PE=4 SV=1)

HSP 1 Score: 689.5 bits (1778), Expect = 8.5e-195
Identity = 356/409 (87.04%), Postives = 381/409 (93.15%), Query Frame = 0


Query: 1   MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60
           MASYAGKGALSNGSVY+CNLP+GTD+NMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE
Sbjct: 1   MASYAGKGALSNGSVYVCNLPYGTDDNMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60

Query: 61  PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTL 120
           PKGDATVTYEDPHAALAAVEWF+NKDFHGNIIEVHIAESKSKDD+SFNVG DPIVV D L
Sbjct: 61  PKGDATVTYEDPHAALAAVEWFNNKDFHGNIIEVHIAESKSKDDLSFNVGDDPIVVGDDL 120

Query: 121 DFEENVGGGMNGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSAR 180
            FEEN    +NGGGGRGRGRGD  PGKAWQQEGDWLCPNTSC+NVNFAFRGVCNRCGSAR
Sbjct: 121 GFEEN-AADVNGGGGRGRGRGDV-PGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSAR 180

Query: 181 PSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKC 240
           PSGAAGSGAGSIGRGRGRGT NQ+SG NSR VGGPTGLFGPNDWPCPMCGNINWAKR+KC
Sbjct: 181 PSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLFGPNDWPCPMCGNINWAKRTKC 240

Query: 241 NICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFR 300
           NICNTNKPGHNEGG RGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFR
Sbjct: 241 NICNTNKPGHNEGGTRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFR 300

Query: 301 AKSQQMEAGQIIPGAGRAGWEFEELGVVEKDRRERSRDQGREWNDRDRDRDRDGSRNKER 360
           AKSQQMEAG+++PGAGRAGWE EELGVVEK+RRERSRD+G  W+  DRD++RD SRN+ER
Sbjct: 301 AKSQQMEAGRVLPGAGRAGWEVEELGVVEKERRERSRDRG--WD--DRDKNRDSSRNRER 360

Query: 361 EPRERHRSRSRERDRGRDRDRDRDRDRDYDFERDKEHGREKEHRSRHRY 410
           E RERHRS SRERDRG      RDRDRDY++ERD+E+GR+K+HRSRHR+
Sbjct: 361 ENRERHRSPSRERDRG------RDRDRDYEYERDREYGRDKDHRSRHRH 397

[Close]

BLAST of CmoCh11G012370 vs. ExPASy TrEMBL
Match: A0A1S3B7U8 (transcription initiation factor TFIID subunit 15 OS=Cucumis melo OX=3656 GN=LOC103486976 PE=4 SV=1)

HSP 1 Score: 688.7 bits (1776), Expect = 1.5e-194
Identity = 355/410 (86.59%), Postives = 381/410 (92.93%), Query Frame = 0


Query: 1   MASYAGKGALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNE 60
           MASY GKGA SNGS+YICNLP+GTDENMLAEYFGTIG+LKKDKRTGRPKIWLYRDKSTNE
Sbjct: 1   MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNE 60

Query: 61  PKGDATVTYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVA-DT 120
           PKGDATVTYEDPHAALAAVEWF+NKDFHG+IIEVHIAESK+KDD+SFNVGVDPIV A D 
Sbjct: 61  PKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESKNKDDISFNVGVDPIVAAGDD 120

Query: 121 LDFEENVGGGMNGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSA 180
           +  EE+   GMNGGGGRGRGRGDA PGKAWQQEGDWLCPNTSC+NVNFAFRGVCNRCGSA
Sbjct: 121 IGPEEST-AGMNGGGGRGRGRGDA-PGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSA 180

Query: 181 RPSGAAGSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSK 240
           RPSGAAGSGAGSIGRGRGRGT NQ+SG NSR VGGPTGLFGPNDWPCPMCGNINWAKR+K
Sbjct: 181 RPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLFGPNDWPCPMCGNINWAKRTK 240

Query: 241 CNICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKF 300
           CNICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKF
Sbjct: 241 CNICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKF 300

Query: 301 RAKSQQMEAGQIIPGAGRAGWEFEELGVVEKDRRERSRDQGREWNDRDRDRDRDGSRNKE 360
           RAKSQQMEAG+I+PGAGRAGWE EELGVVEKDRRERSRD+GR+W+      DRDGSRN+E
Sbjct: 301 RAKSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWD------DRDGSRNRE 360

Query: 361 REPRERHRSRSRERDRGRDRDRDRDRDRDYDFERDKEHGREKEHRSRHRY 410
           RE RERHRSRSRERDRG      R+RD DY++ERD+E+GR+K+HR+RHRY
Sbjct: 361 RESRERHRSRSRERDRG------RERDLDYEYERDREYGRDKDHRNRHRY 396

[Close]

BLAST of CmoCh11G012370 vs. TAIR 10
Match: AT1G50300.1 (TBP-associated factor 15 )

HSP 1 Score: 478.0 bits (1229), Expect = 7.5e-135
Identity = 268/402 (66.67%), Postives = 307/402 (76.37%), Query Frame = 0


Query: 8   GALSNGSVYICNLPFGTDENMLAEYFGTIGLLKKDKRTGRPKIWLYRDKSTNEPKGDATV 67
           G  +NGSVY+ NLP GTDENMLA+YFGTIGLLK+DKRTG PK+WLYRDK T+EPKGDATV
Sbjct: 3   GYPTNGSVYVSNLPLGTDENMLADYFGTIGLLKRDKRTGTPKVWLYRDKETDEPKGDATV 62

Query: 68  TYEDPHAALAAVEWFDNKDFHGNIIEVHIAESKSKDDVSFNVGVDPIVVADTLDFEENVG 127
           TYEDPHAALAAVEWF+NKDFHGN I V +AESK+K+              D ++F E  G
Sbjct: 63  TYEDPHAALAAVEWFNNKDFHGNTIGVFMAESKNKN------------AGDAVEFVEFDG 122

Query: 128 GG--MNGGGGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSARPSGAA 187
           G    NGG GRGRG+ D+   K WQQ+GDW+CPNTSCTNVNFAFRGVCNRCG+ARP+GA+
Sbjct: 123 GAEETNGGAGRGRGQADS-SAKPWQQDGDWMCPNTSCTNVNFAFRGVCNRCGTARPAGAS 182

Query: 188 GSGAGSIGRGRGRGTGNQESGSNSRPVGGPTGLFGPNDWPCPMCGNINWAKRSKCNICNT 247
           G   G+ GRGRGRG G        +P G PTGLFGPNDW CPMCGN+NWAKR KCNICNT
Sbjct: 183 GGSMGA-GRGRGRGGGADGGAPGKQPSGAPTGLFGPNDWACPMCGNVNWAKRLKCNICNT 242

Query: 248 NKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRAKSQQ 307
           NKPG NEGGVRGGRGGGYKELDE+ELEETKRRRREAEEDDGEMYDEFGNLKKK+R K+ Q
Sbjct: 243 NKPGQNEGGVRGGRGGGYKELDEQELEETKRRRREAEEDDGEMYDEFGNLKKKYRVKTNQ 302

Query: 308 MEAGQIIPGAGRAGWEFEELGVVEKDRRERSRDQGREWNDRDRDRDRDGSRNKEREPRER 367
            +    +  AGRAGWE EELG ++KD RERSR       DR RDR RD   +K     +R
Sbjct: 303 ADTRPAV-AAGRAGWEVEELG-IDKDGRERSR-------DRQRDRGRDHHYDK-----DR 362

Query: 368 HRSRSRERDRGRDRDRDRDRDRDYDFERDKEHGREKEHRSRH 408
            RSRSRER+RG++RD D D DRD    RD+++GRE+  R R+
Sbjct: 363 RRSRSRERERGKERDYDYDHDRD----RDRDYGRERGSRYRN 372

[Close]

BLAST of CmoCh11G012370 vs. TAIR 10
Match: AT5G58470.1 (TBP-associated factor 15B )

HSP 1 Score: 57.0 bits (136), Expect = 4.1e-08
Identity = 38/82 (46.34%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 127 GGGMNGG--GGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSARPSGA 186
           GGG  GG  GGRG G G         ++GDW CPN SC NVNFA R  CN+CG+  PSG 
Sbjct: 66  GGGYQGGDRGGRGSGGGG--------RDGDWRCPNPSCGNVNFARRVECNKCGALAPSGT 125

Query: 187 AGSGAGSIGRGRGRGTGNQESG 207
           +       G G  RG G+ + G
Sbjct: 126 SSGANDRGGGGYSRGGGDSDRG 139

[Close]

BLAST of CmoCh11G012370 vs. TAIR 10
Match: AT5G58470.2 (TBP-associated factor 15B )

HSP 1 Score: 57.0 bits (136), Expect = 4.1e-08
Identity = 38/82 (46.34%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 127 GGGMNGG--GGRGRGRGDAPPGKAWQQEGDWLCPNTSCTNVNFAFRGVCNRCGSARPSGA 186
           GGG  GG  GGRG G G         ++GDW CPN SC NVNFA R  CN+CG+  PSG 
Sbjct: 66  GGGYQGGDRGGRGSGGGG--------RDGDWRCPNPSCGNVNFARRVECNKCGALAPSGT 125

Query: 187 AGSGAGSIGRGRGRGTGNQESG 207
           +       G G  RG G+ + G
Sbjct: 126 SSGANDRGGGGYSRGGGDSDRG 139

[Close]

BLAST of CmoCh11G012370 vs. TAIR 10
Match: AT2G33730.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 8.0e-04
Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 323 EELGVVEKDRRERSRDQGREWNDRDRDRDRDGSRNKEREPRERHRSRSRERDRGRDRDRD 382
           E+LG  E +  + S        DRDRDRDRD  R+++RE     R R R+RDR RDRDRD
Sbjct: 53  EQLGRPEPETEDVSNGDTNRDKDRDRDRDRDRERDRDRE-----RDRGRDRDRDRDRDRD 112

Query: 383 RDRDRDYDFERD-KEHGREKEHRSRHR 409
           RDR+R+ D ERD +E  RE + R+R +
Sbjct: 113 RDRERERDRERDRRERDREPDRRNREK 134

The following BLAST results are available for this feature:

BLAST of CmoCh11G012370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AST1	1.1e-133	66.67	Transcription initiation factor TFIID subunit 15 OS=Arabidopsis thaliana OX=3702...	[more]
Q92804	2.6e-31	36.64	TATA-binding protein-associated factor 2N OS=Homo sapiens OX=9606 GN=TAF15 PE=1 ...	[more]
Q27294	3.7e-30	35.34	RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2	[more]
P56959	2.0e-28	35.56	RNA-binding protein FUS OS=Mus musculus OX=10090 GN=Fus PE=1 SV=1	[more]
Q28009	2.7e-28	35.40	RNA-binding protein FUS OS=Bos taurus OX=9913 GN=FUS PE=2 SV=2	[more]

BLAST of CmoCh11G012370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EUE8	1.1e-229	100.00	transcription initiation factor TFIID subunit 15-like OS=Cucurbita moschata OX=3...	[more]
A0A6J1I1S4	1.2e-220	97.31	transcription initiation factor TFIID subunit 15-like OS=Cucurbita maxima OX=366...	[more]
A0A6J1DG70	5.0e-195	87.53	transcription initiation factor TFIID subunit 15 OS=Momordica charantia OX=3673 ...	[more]
A0A6J1F8E5	8.5e-195	87.04	transcription initiation factor TFIID subunit 15-like OS=Cucurbita moschata OX=3...	[more]
A0A1S3B7U8	1.5e-194	86.59	transcription initiation factor TFIID subunit 15 OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of CmoCh11G012370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G50300.1	7.5e-135	66.67	TBP-associated factor 15	[more]
AT5G58470.1	4.1e-08	46.34	TBP-associated factor 15B	[more]
AT5G58470.2	4.1e-08	46.34	TBP-associated factor 15B	[more]
AT2G33730.1	8.0e-04	48.28	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 264..284
None	No IPR available	GENE3D	4.10.1060.10		coord: 219..250 e-value: 4.4E-9 score: 37.4 coord: 149..184 e-value: 6.9E-13 score: 49.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 261..287
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 315..409
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..212
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 323..401
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 247..287
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..216
None	No IPR available	PANTHER	PTHR12999:SF17	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 15	coord: 1..407
None	No IPR available	PANTHER	PTHR12999	ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED	coord: 1..407
None	No IPR available	CDD	cd12534	RRM_SARFH	coord: 15..97 e-value: 9.33372E-52 score: 166.441
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 14..95 e-value: 5.4E-12 score: 55.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 15..92 e-value: 7.9E-7 score: 28.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 13..99 score: 11.622288
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 222..246 e-value: 3.0E-6 score: 36.8 coord: 153..179 e-value: 1.0E-5 score: 35.0
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 223..249 e-value: 4.0E-4 score: 19.6 coord: 152..182 e-value: 3.4E-7 score: 29.4
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 224..243
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 155..176
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 151..182 score: 9.992108
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 220..249 score: 9.506543
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 12..95 e-value: 1.0E-20 score: 75.8
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 213..250
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 144..183
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 12..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G012370.1	CmoCh11G012370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003676	nucleic acid binding