CmoCh11G002800 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G002800
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	VQ domain-containing protein
Location	Cmo_Chr11: 1363066 .. 1363791 (+)
RNA-Seq Expression	CmoCh11G002800
Synteny	CmoCh11G002800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCCTCAGCAACCTCTTAATGGGAAGAGGGATCAGAGCACAGCCAATACCAACAACAATGCCAAGGTTTTGTGTCCGCCTCCATTGAAGATCAACAAGGATTCTCATTTCATTAGGAAATCTTCGTCGTCTAATTCTACTTCGCCTTCTTCGTCTTCGTCTTCCACTTCTTCGCAGCTTGTCAATGGCGTCGCCGCCGCTGTTGCTGTCGCAGGTTCTGTCAAGCCGCCGCCGCAGCGTCATCCGGTGATTATATACACGCATTCTCCCAAAATTATCCACACGCATCCTCGAGATTTTATGGCGTTGGTGCAAAAGCTCACTGGAATGTCTCGATCCGATGAAGAAGCTTCTCCTAAGGCGACGAAATCTGGCGACGAGAATAATAAGGGATCTAAAGCCGTTGTGAGTGATGATAATGAATCGTCGTCCGTTGTGACAGAGGAGAATTGCTGCAGCGGCGGCGTGGTGGAAGGTCAGGTTAATTCGTGTTTTGCTCCGCCGATCTTCGAGCCACCGCCACCTCCTCCACAACTTGCTAATTCTTACCTAACGAACATTCCGGTTTACAGGCCGAATTCGACGGAGTTTTTGTGCTCTAATCAGCCGTTTTTTAACTACGACGATTCCTTGCTCTTTGGCGCTCCTAACATCCAATCTCTTGCGTCCACTAATTCTACACTGAACGGAATTAACGATTTCTGCGAATATGGCGAATATTAG

mRNA sequence

ATGAGCCCTCAGCAACCTCTTAATGGGAAGAGGGATCAGAGCACAGCCAATACCAACAACAATGCCAAGGTTTTGTGTCCGCCTCCATTGAAGATCAACAAGGATTCTCATTTCATTAGGAAATCTTCGTCGTCTAATTCTACTTCGCCTTCTTCGTCTTCGTCTTCCACTTCTTCGCAGCTTGTCAATGGCGTCGCCGCCGCTGTTGCTGTCGCAGGTTCTGTCAAGCCGCCGCCGCAGCGTCATCCGGTGATTATATACACGCATTCTCCCAAAATTATCCACACGCATCCTCGAGATTTTATGGCGTTGGTGCAAAAGCTCACTGGAATGTCTCGATCCGATGAAGAAGCTTCTCCTAAGGCGACGAAATCTGGCGACGAGAATAATAAGGGATCTAAAGCCGTTGTGAGTGATGATAATGAATCGTCGTCCGTTGTGACAGAGGAGAATTGCTGCAGCGGCGGCGTGGTGGAAGGTCAGGTTAATTCGTGTTTTGCTCCGCCGATCTTCGAGCCACCGCCACCTCCTCCACAACTTGCTAATTCTTACCTAACGAACATTCCGGTTTACAGGCCGAATTCGACGGAGTTTTTGTGCTCTAATCAGCCGTTTTTTAACTACGACGATTCCTTGCTCTTTGGCGCTCCTAACATCCAATCTCTTGCGTCCACTAATTCTACACTGAACGGAATTAACGATTTCTGCGAATATGGCGAATATTAG

Coding sequence (CDS)

ATGAGCCCTCAGCAACCTCTTAATGGGAAGAGGGATCAGAGCACAGCCAATACCAACAACAATGCCAAGGTTTTGTGTCCGCCTCCATTGAAGATCAACAAGGATTCTCATTTCATTAGGAAATCTTCGTCGTCTAATTCTACTTCGCCTTCTTCGTCTTCGTCTTCCACTTCTTCGCAGCTTGTCAATGGCGTCGCCGCCGCTGTTGCTGTCGCAGGTTCTGTCAAGCCGCCGCCGCAGCGTCATCCGGTGATTATATACACGCATTCTCCCAAAATTATCCACACGCATCCTCGAGATTTTATGGCGTTGGTGCAAAAGCTCACTGGAATGTCTCGATCCGATGAAGAAGCTTCTCCTAAGGCGACGAAATCTGGCGACGAGAATAATAAGGGATCTAAAGCCGTTGTGAGTGATGATAATGAATCGTCGTCCGTTGTGACAGAGGAGAATTGCTGCAGCGGCGGCGTGGTGGAAGGTCAGGTTAATTCGTGTTTTGCTCCGCCGATCTTCGAGCCACCGCCACCTCCTCCACAACTTGCTAATTCTTACCTAACGAACATTCCGGTTTACAGGCCGAATTCGACGGAGTTTTTGTGCTCTAATCAGCCGTTTTTTAACTACGACGATTCCTTGCTCTTTGGCGCTCCTAACATCCAATCTCTTGCGTCCACTAATTCTACACTGAACGGAATTAACGATTTCTGCGAATATGGCGAATATTAG

Protein sequence

MSPQQPLNGKRDQSTANTNNNAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSSTSSQLVNGVAAAVAVAGSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEEASPKATKSGDENNKGSKAVVSDDNESSSVVTEENCCSGGVVEGQVNSCFAPPIFEPPPPPPQLANSYLTNIPVYRPNSTEFLCSNQPFFNYDDSLLFGAPNIQSLASTNSTLNGINDFCEYGEY

Homology

[Close]

BLAST of CmoCh11G002800 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.1e-27
Identity = 104/274 (37.96%), Postives = 136/274 (49.64%), Query Frame = 0


Query: 27  PPPLKINKDSHFIRKSSSSNSTSPSSSSSSTSSQLVNGVAAAVAVAGSVKPPPQRHPVII 86
           PP LK+NKDSH I+K       SPSS SS                  + KP   RHPVII
Sbjct: 43  PPTLKVNKDSHVIKK-----PPSPSSFSS------------------AAKP---RHPVII 102

Query: 87  YTHSPKIIHTHPRDFMALVQKLTGMSRSDEE-------ASPKATK--------------- 146
           YTH+P+IIHT+P+DFMALVQKLTGM+ SDE+         P   K               
Sbjct: 103 YTHTPRIIHTNPKDFMALVQKLTGMTHSDEDLGGGNAMTDPGVVKSINRTVSEPTVDRKN 162

Query: 147 ---------------SGDENNKG---SKAVVSDDNESSSVV-TEENCCSGGVVEGQVNSC 206
                          SG  N KG   +  ++S+D+ESSSV+ TEEN        GQVNS 
Sbjct: 163 NRNRCGGGNNYLRNYSGAGNGKGIFFNNTMISEDSESSSVITTEENIGE----HGQVNSS 222

Query: 207 F----------APPIFEPPPPPPQLAN-------SYLTNIPVYRP--NSTEFLCSNQPFF 239
                       PP   PPPPPP + +       +YL   P++ P   +  FLC NQPF 
Sbjct: 223 LPYSAVAIPPQPPPHPPPPPPPPSMYDAAGINYGAYLPTFPIFPPANPADNFLCGNQPFA 282

[Close]

BLAST of CmoCh11G002800 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.6e-04
Identity = 36/101 (35.64%), Postives = 49/101 (48.51%), Query Frame = 0


Query: 27  PPPLKINKDSHFIRKSSSSNSTSPSSSSSSTSSQLVNGVAAAVAVAGSVKPPPQRHPVII 86
           P PLK+  DSH I K        P      T  Q               +PPP   PV I
Sbjct: 16  PTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQ----------EPSQSRPPP--GPVNI 75

Query: 87  YTHSPKIIHTHPRDFMALVQKLTGMSRSDEEASPKATKSGD 128
           YT +P+IIHTHP +FM LVQ+LTG + +   +S  ++ + +
Sbjct: 76  YTVTPRIIHTHPNNFMTLVQRLTGQTSTSTTSSSSSSSTSE 104

[Close]

BLAST of CmoCh11G002800 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.1e-04
Identity = 37/106 (34.91%), Postives = 53/106 (50.00%), Query Frame = 0


Query: 53  SSSSTSSQLVNGVAAAVAVAGSVKPPPQRH----PVIIYTHSPKIIHTHPRDFMALVQKL 112
           + S  SS  + G +  +    S K  P+ H    PVIIY HSPK+IHT   DFMALVQ+L
Sbjct: 10  NGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQRL 69

Query: 113 TGMS-----RSDEEASPKATKSGDENNKGSKAVVSDDNESSSVVTE 150
           TG+       + E +S   T+  +  +  + A  S D      +T+
Sbjct: 70  TGLDEIIRRNTSESSSSVVTEEVNVGDDNTAAPFSQDRTQRQKLTD 115

[Close]

BLAST of CmoCh11G002800 vs. ExPASy TrEMBL
Match: A0A6J1EZ55 (VQ motif-containing protein 20-like OS=Cucurbita moschata OX=3662 GN=LOC111440881 PE=4 SV=1)

HSP 1 Score: 471.1 bits (1211), Expect = 2.8e-129
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MSPQQPLNGKRDQSTANTNNNAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSSTSSQ 60
           MSPQQPLNGKRDQSTANTNNNAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSSTSSQ
Sbjct: 1   MSPQQPLNGKRDQSTANTNNNAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSSTSSQ 60

Query: 61  LVNGVAAAVAVAGSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEEASP 120
           LVNGVAAAVAVAGSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEEASP
Sbjct: 61  LVNGVAAAVAVAGSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEEASP 120

Query: 121 KATKSGDENNKGSKAVVSDDNESSSVVTEENCCSGGVVEGQVNSCFAPPIFEPPPPPPQL 180
           KATKSGDENNKGSKAVVSDDNESSSVVTEENCCSGGVVEGQVNSCFAPPIFEPPPPPPQL
Sbjct: 121 KATKSGDENNKGSKAVVSDDNESSSVVTEENCCSGGVVEGQVNSCFAPPIFEPPPPPPQL 180

Query: 181 ANSYLTNIPVYRPNSTEFLCSNQPFFNYDDSLLFGAPNIQSLASTNSTLNGINDFCEYGE 240
           ANSYLTNIPVYRPNSTEFLCSNQPFFNYDDSLLFGAPNIQSLASTNSTLNGINDFCEYGE
Sbjct: 181 ANSYLTNIPVYRPNSTEFLCSNQPFFNYDDSLLFGAPNIQSLASTNSTLNGINDFCEYGE 240

Query: 241 Y 242
           Y
Sbjct: 241 Y 241

[Close]

BLAST of CmoCh11G002800 vs. ExPASy TrEMBL
Match: A0A6J1L266 (VQ motif-containing protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111499724 PE=4 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 9.0e-128
Identity = 238/241 (98.76%), Postives = 238/241 (98.76%), Query Frame = 0


Query: 1   MSPQQPLNGKRDQSTANTNNNAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSSTSSQ 60
           MSPQQPLNGKRDQSTANTNNNAKVLCPPPLKINKDSHFIRKSSSSNS SPSSSSSSTSSQ
Sbjct: 1   MSPQQPLNGKRDQSTANTNNNAKVLCPPPLKINKDSHFIRKSSSSNSASPSSSSSSTSSQ 60

Query: 61  LVNGVAAAVAVAGSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEEASP 120
           LVNGVAAAVAVAGS KPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEEASP
Sbjct: 61  LVNGVAAAVAVAGSAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEEASP 120

Query: 121 KATKSGDENNKGSKAVVSDDNESSSVVTEENCCSGGVVEGQVNSCFAPPIFEPPPPPPQL 180
           KATKSGDENNKGSK VVSDDNESSSVVTEENCCSGGVVEGQVNSCFAPPIFEPPPPPPQL
Sbjct: 121 KATKSGDENNKGSKVVVSDDNESSSVVTEENCCSGGVVEGQVNSCFAPPIFEPPPPPPQL 180

Query: 181 ANSYLTNIPVYRPNSTEFLCSNQPFFNYDDSLLFGAPNIQSLASTNSTLNGINDFCEYGE 240
           ANSYLTNIPVYRPNSTEFLCSNQPFFNYDDSLLFGAPNIQSLASTNSTLNGINDFCEYGE
Sbjct: 181 ANSYLTNIPVYRPNSTEFLCSNQPFFNYDDSLLFGAPNIQSLASTNSTLNGINDFCEYGE 240

Query: 241 Y 242
           Y
Sbjct: 241 Y 241

[Close]

BLAST of CmoCh11G002800 vs. ExPASy TrEMBL
Match: A0A6J1C0L6 (VQ motif-containing protein 20 OS=Momordica charantia OX=3673 GN=LOC111007349 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.7e-86
Identity = 195/254 (76.77%), Postives = 209/254 (82.28%), Query Frame = 0


Query: 1   MSPQQPLNGKRDQSTANTNN---NAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSST 60
           MSPQQ L+GKRD  +   NN   N   LCPPPLKINKDSHFIRKSSSS S+SPSSSSSST
Sbjct: 1   MSPQQ-LHGKRDNGSTTANNGNGNGNGLCPPPLKINKDSHFIRKSSSS-SSSPSSSSSST 60

Query: 61  SSQLVNGVAAAVAVAGSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEE 120
           SS LVNGV      AG  K PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+SRSD+E
Sbjct: 61  SS-LVNGVVG----AGCAK-PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGLSRSDDE 120

Query: 121 A---SPKATKSGDENNKGSKAVV--SDDNESSSVV-TEENCCSGGVVEGQVNSCFAPPIF 180
           A   SP ATK G+EN   S  VV  SDDNESSSVV T+ENCC  GVVEGQVNSCFAPP+F
Sbjct: 121 AGANSPNATKCGEENKIISSKVVVTSDDNESSSVVTTDENCCGSGVVEGQVNSCFAPPMF 180

Query: 181 E--PPPPPPQLANSYLTNIPVYRPNSTEFLCSN-QPFFNYDD-SLLFGAPNIQSLASTNS 240
           E  PPPPPPQ+A+SYLTNIPVYRPNST+FLCSN QPFFNY+D SLLFGAPNI SL+S NS
Sbjct: 181 EPPPPPPPPQVASSYLTNIPVYRPNSTDFLCSNHQPFFNYNDSSLLFGAPNIHSLSSANS 240

Query: 241 TLNGINDFCEYGEY 242
           TLNGINDFC+Y EY
Sbjct: 241 TLNGINDFCDYSEY 246

[Close]

BLAST of CmoCh11G002800 vs. ExPASy TrEMBL
Match: A0A1S3BXM8 (VQ motif-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103494334 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 1.2e-74
Identity = 171/260 (65.77%), Postives = 189/260 (72.69%), Query Frame = 0


Query: 1   MSPQQPLNGKRDQSTANTNNNAKVLCPPPLKINKDSHFIRK--SSSSNSTSPSSSSSSTS 60
           MSPQQ ++GKRD +  N N N  +LCPPPLKINKDSH IRK  SSS+N+TS  SSSSS++
Sbjct: 1   MSPQQQIHGKRD-NQINNNGNKPILCPPPLKINKDSHLIRKTSSSSNNTTSSPSSSSSST 60

Query: 61  SQLVNGVAAAVAVAGSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDE-E 120
           + LVNGVAAA A A     P QRHPVIIYTHSPK+IHTHPRDFMALVQKLTGMSRSD+ E
Sbjct: 61  TSLVNGVAAAAAAAAK---PLQRHPVIIYTHSPKVIHTHPRDFMALVQKLTGMSRSDDHE 120

Query: 121 ASPK------ATKSGDENNKGSKAVVSDDNESSSVV-TEENCCSGG-----VVEGQVNSC 180
           AS K           + NNKGSKAVVSDDNESSSVV T+ENCC GG     +  GQVNSC
Sbjct: 121 ASTKLATTKPVVDENNNNNKGSKAVVSDDNESSSVVTTDENCCGGGGGSGMMEVGQVNSC 180

Query: 181 FAPPIFEPP-----PPPPQLANSYLTNIPVYRPNSTEFLCSNQPFFNYDDSLLFGAPNIQ 240
           F P IFEPP     PPPPQLANSYLTNIP+Y PNS EFLC+NQP FNYDDSLLFG   + 
Sbjct: 181 FGPVIFEPPPPPPSPPPPQLANSYLTNIPIYTPNSMEFLCANQPIFNYDDSLLFGGNRV- 240

[Close]

BLAST of CmoCh11G002800 vs. ExPASy TrEMBL
Match: A0A5A7V0G0 (VQ motif-containing protein 20-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001740 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.6e-74
Identity = 179/253 (70.75%), Postives = 195/253 (77.08%), Query Frame = 0


Query: 1   MSP---QQPLNGKRDQSTANTNNNA-KVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSS 60
           MSP   QQ ++GKRD      NNNA K L PP LKINKDSH IRKSSSS++TS  SSSSS
Sbjct: 1   MSPQHQQQQIHGKRDN---QINNNANKPLSPPSLKINKDSHLIRKSSSSSNTSSPSSSSS 60

Query: 61  TSSQLVNGVAAAVAVAGSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDE 120
           +++ LVNGV  AVA       PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSD+
Sbjct: 61  STTSLVNGVPTAVA------KPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDD 120

Query: 121 EASPKAT-KSGDENNKGSKAVVSDDNESSSVV-TEENCCSG----GVVE-GQVNSCFAPP 180
           EAS KAT KS DENNK SK VV+DDNESSSV+ T+ENCC+G    G VE GQVNSCF P 
Sbjct: 121 EASTKATAKSVDENNKVSK-VVNDDNESSSVLTTDENCCNGSGSSGAVEGGQVNSCFGPA 180

Query: 181 IFE----PPPPPPQLANSYLTNIPVYRPNSTEFLCSNQPFFNYDDSLLFGAPNIQSLAST 239
            FE    PPPPPPQLANSYLTN+PVY PNSTEFLC NQP FNYDDSLLFG  NI SL+S 
Sbjct: 181 SFEPPPPPPPPPPQLANSYLTNMPVYGPNSTEFLCGNQPIFNYDDSLLFGGSNIPSLSS- 238

[Close]

BLAST of CmoCh11G002800 vs. NCBI nr
Match: XP_022933476.1 (VQ motif-containing protein 20-like [Cucurbita moschata])

HSP 1 Score: 471.1 bits (1211), Expect = 5.8e-129
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MSPQQPLNGKRDQSTANTNNNAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSSTSSQ 60
           MSPQQPLNGKRDQSTANTNNNAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSSTSSQ
Sbjct: 1   MSPQQPLNGKRDQSTANTNNNAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSSTSSQ 60

Query: 61  LVNGVAAAVAVAGSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEEASP 120
           LVNGVAAAVAVAGSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEEASP
Sbjct: 61  LVNGVAAAVAVAGSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEEASP 120

Query: 121 KATKSGDENNKGSKAVVSDDNESSSVVTEENCCSGGVVEGQVNSCFAPPIFEPPPPPPQL 180
           KATKSGDENNKGSKAVVSDDNESSSVVTEENCCSGGVVEGQVNSCFAPPIFEPPPPPPQL
Sbjct: 121 KATKSGDENNKGSKAVVSDDNESSSVVTEENCCSGGVVEGQVNSCFAPPIFEPPPPPPQL 180

Query: 181 ANSYLTNIPVYRPNSTEFLCSNQPFFNYDDSLLFGAPNIQSLASTNSTLNGINDFCEYGE 240
           ANSYLTNIPVYRPNSTEFLCSNQPFFNYDDSLLFGAPNIQSLASTNSTLNGINDFCEYGE
Sbjct: 181 ANSYLTNIPVYRPNSTEFLCSNQPFFNYDDSLLFGAPNIQSLASTNSTLNGINDFCEYGE 240

Query: 241 Y 242
           Y
Sbjct: 241 Y 241

[Close]

BLAST of CmoCh11G002800 vs. NCBI nr
Match: KAG7021613.1 (VQ motif-containing protein 20, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 469.5 bits (1207), Expect = 1.7e-128
Identity = 239/241 (99.17%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MSPQQPLNGKRDQSTANTNNNAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSSTSSQ 60
           MSPQQPLNGKRDQSTANTNNNAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSSTSSQ
Sbjct: 1   MSPQQPLNGKRDQSTANTNNNAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSSTSSQ 60

Query: 61  LVNGVAAAVAVAGSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEEASP 120
           LVNG+AAAVAVAGSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEEASP
Sbjct: 61  LVNGIAAAVAVAGSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEEASP 120

Query: 121 KATKSGDENNKGSKAVVSDDNESSSVVTEENCCSGGVVEGQVNSCFAPPIFEPPPPPPQL 180
           KATKSGDENNKGSKAVVSDDNESSSVVT+ENCCSGGVVEGQVNSCFAPPIFEPPPPPPQL
Sbjct: 121 KATKSGDENNKGSKAVVSDDNESSSVVTDENCCSGGVVEGQVNSCFAPPIFEPPPPPPQL 180

Query: 181 ANSYLTNIPVYRPNSTEFLCSNQPFFNYDDSLLFGAPNIQSLASTNSTLNGINDFCEYGE 240
           ANSYLTNIPVYRPNSTEFLCSNQPFFNYDDSLLFGAPNIQSLASTNSTLNGINDFCEYGE
Sbjct: 181 ANSYLTNIPVYRPNSTEFLCSNQPFFNYDDSLLFGAPNIQSLASTNSTLNGINDFCEYGE 240

Query: 241 Y 242
           Y
Sbjct: 241 Y 241

[Close]

BLAST of CmoCh11G002800 vs. NCBI nr
Match: XP_023531062.1 (VQ motif-containing protein 20 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 468.4 bits (1204), Expect = 3.8e-128
Identity = 240/241 (99.59%), Postives = 240/241 (99.59%), Query Frame = 0


Query: 1   MSPQQPLNGKRDQSTANTNNNAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSSTSSQ 60
           MSPQQPLNGKRDQSTANTNNNAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSSTSSQ
Sbjct: 1   MSPQQPLNGKRDQSTANTNNNAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSSTSSQ 60

Query: 61  LVNGVAAAVAVAGSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEEASP 120
           LVNGVAAAVAVAGSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEEASP
Sbjct: 61  LVNGVAAAVAVAGSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEEASP 120

Query: 121 KATKSGDENNKGSKAVVSDDNESSSVVTEENCCSGGVVEGQVNSCFAPPIFEPPPPPPQL 180
           KATKSGDENNKGSKAVVSDDNESSSVVTEENCCSGGVVEGQVNSCFAPPIFEPPPPPPQL
Sbjct: 121 KATKSGDENNKGSKAVVSDDNESSSVVTEENCCSGGVVEGQVNSCFAPPIFEPPPPPPQL 180

Query: 181 ANSYLTNIPVYRPNSTEFLCSNQPFFNYDDSLLFGAPNIQSLASTNSTLNGINDFCEYGE 240
           ANSYLTNIPVYRPNSTEFLCSNQPFFNYDDSLLFGAPNIQSLASTNSTLNG NDFCEYGE
Sbjct: 181 ANSYLTNIPVYRPNSTEFLCSNQPFFNYDDSLLFGAPNIQSLASTNSTLNGNNDFCEYGE 240

Query: 241 Y 242
           Y
Sbjct: 241 Y 241

[Close]

BLAST of CmoCh11G002800 vs. NCBI nr
Match: KAG6587652.1 (VQ motif-containing protein 20, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 468.4 bits (1204), Expect = 3.8e-128
Identity = 239/241 (99.17%), Postives = 240/241 (99.59%), Query Frame = 0


Query: 1   MSPQQPLNGKRDQSTANTNNNAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSSTSSQ 60
           MSPQQPLNGKRDQSTANTNNNAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSSTSSQ
Sbjct: 1   MSPQQPLNGKRDQSTANTNNNAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSSTSSQ 60

Query: 61  LVNGVAAAVAVAGSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEEASP 120
           LVNG+AAAVAVA SVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEEASP
Sbjct: 61  LVNGIAAAVAVASSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEEASP 120

Query: 121 KATKSGDENNKGSKAVVSDDNESSSVVTEENCCSGGVVEGQVNSCFAPPIFEPPPPPPQL 180
           KATKSGDENNKGSKAVVSDDNESSSVVTEENCCSGGVVEGQVNSCFAPPIFEPPPPPPQL
Sbjct: 121 KATKSGDENNKGSKAVVSDDNESSSVVTEENCCSGGVVEGQVNSCFAPPIFEPPPPPPQL 180

Query: 181 ANSYLTNIPVYRPNSTEFLCSNQPFFNYDDSLLFGAPNIQSLASTNSTLNGINDFCEYGE 240
           ANSYLTNIPVYRPNSTEFLCSNQPFFNYDDSLLFGAPNIQSLASTNSTLNGINDFCEYGE
Sbjct: 181 ANSYLTNIPVYRPNSTEFLCSNQPFFNYDDSLLFGAPNIQSLASTNSTLNGINDFCEYGE 240

Query: 241 Y 242
           Y
Sbjct: 241 Y 241

[Close]

BLAST of CmoCh11G002800 vs. NCBI nr
Match: XP_023007145.1 (VQ motif-containing protein 20-like [Cucurbita maxima])

HSP 1 Score: 466.1 bits (1198), Expect = 1.9e-127
Identity = 238/241 (98.76%), Postives = 238/241 (98.76%), Query Frame = 0


Query: 1   MSPQQPLNGKRDQSTANTNNNAKVLCPPPLKINKDSHFIRKSSSSNSTSPSSSSSSTSSQ 60
           MSPQQPLNGKRDQSTANTNNNAKVLCPPPLKINKDSHFIRKSSSSNS SPSSSSSSTSSQ
Sbjct: 1   MSPQQPLNGKRDQSTANTNNNAKVLCPPPLKINKDSHFIRKSSSSNSASPSSSSSSTSSQ 60

Query: 61  LVNGVAAAVAVAGSVKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEEASP 120
           LVNGVAAAVAVAGS KPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEEASP
Sbjct: 61  LVNGVAAAVAVAGSAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDEEASP 120

Query: 121 KATKSGDENNKGSKAVVSDDNESSSVVTEENCCSGGVVEGQVNSCFAPPIFEPPPPPPQL 180
           KATKSGDENNKGSK VVSDDNESSSVVTEENCCSGGVVEGQVNSCFAPPIFEPPPPPPQL
Sbjct: 121 KATKSGDENNKGSKVVVSDDNESSSVVTEENCCSGGVVEGQVNSCFAPPIFEPPPPPPQL 180

Query: 181 ANSYLTNIPVYRPNSTEFLCSNQPFFNYDDSLLFGAPNIQSLASTNSTLNGINDFCEYGE 240
           ANSYLTNIPVYRPNSTEFLCSNQPFFNYDDSLLFGAPNIQSLASTNSTLNGINDFCEYGE
Sbjct: 181 ANSYLTNIPVYRPNSTEFLCSNQPFFNYDDSLLFGAPNIQSLASTNSTLNGINDFCEYGE 240

Query: 241 Y 242
           Y
Sbjct: 241 Y 241

[Close]

BLAST of CmoCh11G002800 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 122.9 bits (307), Expect = 3.6e-28
Identity = 104/274 (37.96%), Postives = 136/274 (49.64%), Query Frame = 0


Query: 27  PPPLKINKDSHFIRKSSSSNSTSPSSSSSSTSSQLVNGVAAAVAVAGSVKPPPQRHPVII 86
           PP LK+NKDSH I+K       SPSS SS                  + KP   RHPVII
Sbjct: 43  PPTLKVNKDSHVIKK-----PPSPSSFSS------------------AAKP---RHPVII 102

Query: 87  YTHSPKIIHTHPRDFMALVQKLTGMSRSDEE-------ASPKATK--------------- 146
           YTH+P+IIHT+P+DFMALVQKLTGM+ SDE+         P   K               
Sbjct: 103 YTHTPRIIHTNPKDFMALVQKLTGMTHSDEDLGGGNAMTDPGVVKSINRTVSEPTVDRKN 162

Query: 147 ---------------SGDENNKG---SKAVVSDDNESSSVV-TEENCCSGGVVEGQVNSC 206
                          SG  N KG   +  ++S+D+ESSSV+ TEEN        GQVNS 
Sbjct: 163 NRNRCGGGNNYLRNYSGAGNGKGIFFNNTMISEDSESSSVITTEENIGE----HGQVNSS 222

Query: 207 F----------APPIFEPPPPPPQLAN-------SYLTNIPVYRP--NSTEFLCSNQPFF 239
                       PP   PPPPPP + +       +YL   P++ P   +  FLC NQPF 
Sbjct: 223 LPYSAVAIPPQPPPHPPPPPPPPSMYDAAGINYGAYLPTFPIFPPANPADNFLCGNQPFA 282

[Close]

BLAST of CmoCh11G002800 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.7e-06
Identity = 38/93 (40.86%), Postives = 46/93 (49.46%), Query Frame = 0


Query: 27  PPPLKINKDSHFIRKSSSSNSTSPSSSSSSTSSQLVNGVAAAVAVAGSVKPPPQRHPVII 86
           P PLK+  DSH I K        P      T  Q               +PPP   PVII
Sbjct: 16  PIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQ----------EPSQSRPPP--GPVII 75

Query: 87  YTHSPKIIHTHPRDFMALVQKLTGMSRSDEEAS 120
           YT SP+IIHTHP +FM LVQ+LTG + +   +S
Sbjct: 76  YTVSPRIIHTHPNNFMTLVQRLTGKTSTSTTSS 96

[Close]

BLAST of CmoCh11G002800 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 48.1 bits (113), Expect = 1.1e-05
Identity = 36/101 (35.64%), Postives = 49/101 (48.51%), Query Frame = 0


Query: 27  PPPLKINKDSHFIRKSSSSNSTSPSSSSSSTSSQLVNGVAAAVAVAGSVKPPPQRHPVII 86
           P PLK+  DSH I K        P      T  Q               +PPP   PV I
Sbjct: 16  PTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQ----------EPSQSRPPP--GPVNI 75

Query: 87  YTHSPKIIHTHPRDFMALVQKLTGMSRSDEEASPKATKSGD 128
           YT +P+IIHTHP +FM LVQ+LTG + +   +S  ++ + +
Sbjct: 76  YTVTPRIIHTHPNNFMTLVQRLTGQTSTSTTSSSSSSSTSE 104

[Close]

BLAST of CmoCh11G002800 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.5e-05
Identity = 37/106 (34.91%), Postives = 53/106 (50.00%), Query Frame = 0


Query: 53  SSSSTSSQLVNGVAAAVAVAGSVKPPPQRH----PVIIYTHSPKIIHTHPRDFMALVQKL 112
           + S  SS  + G +  +    S K  P+ H    PVIIY HSPK+IHT   DFMALVQ+L
Sbjct: 10  NGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQRL 69

Query: 113 TGMS-----RSDEEASPKATKSGDENNKGSKAVVSDDNESSSVVTE 150
           TG+       + E +S   T+  +  +  + A  S D      +T+
Sbjct: 70  TGLDEIIRRNTSESSSSVVTEEVNVGDDNTAAPFSQDRTQRQKLTD 115

[Close]

BLAST of CmoCh11G002800 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 )

HSP 1 Score: 43.1 bits (100), Expect = 3.6e-04
Identity = 50/189 (26.46%), Postives = 72/189 (38.10%), Query Frame = 0


Query: 1   MSPQQPLNGKRDQSTANTNNNAKVL--CPPPLKINKDSHFIRKSSSSNSTSPSSSSSSTS 60
           M P +   G       N     ++    P PL ++KDSH I+K     +  P+       
Sbjct: 1   MDPSEYFAGGNPSDQQNQKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRD----- 60

Query: 61  SQLVNGVAAAVAVAGSVKPPP--QRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSR--- 120
                            +PPP   R PV+IY  SPK++H    +FM +VQ+LTG+S    
Sbjct: 61  -----------------QPPPYIPREPVVIYAVSPKVVHATASEFMNVVQRLTGISSGVF 120

Query: 121 ----SDEEASPKATKSGDEN---NKGSKAVVSDDNESSSVVTEENCCSGGVVEGQVNSCF 176
                  + SP A  +  EN     G +    D+    +   EE    GG         +
Sbjct: 121 LESGGGGDVSPAARLASTENASPRGGKEPAARDETVEINTAMEEAAEFGG---------Y 158

The following BLAST results are available for this feature:

BLAST of CmoCh11G002800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LS54	5.1e-27	37.96	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
F4HWF9	1.6e-04	35.64	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]
Q9CA36	2.1e-04	34.91	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of CmoCh11G002800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EZ55	2.8e-129	100.00	VQ motif-containing protein 20-like OS=Cucurbita moschata OX=3662 GN=LOC11144088...	[more]
A0A6J1L266	9.0e-128	98.76	VQ motif-containing protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111499724 ...	[more]
A0A6J1C0L6	1.7e-86	76.77	VQ motif-containing protein 20 OS=Momordica charantia OX=3673 GN=LOC111007349 PE...	[more]
A0A1S3BXM8	1.2e-74	65.77	VQ motif-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103494334 PE=4 SV=1	[more]
A0A5A7V0G0	2.6e-74	70.75	VQ motif-containing protein 20-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]

BLAST of CmoCh11G002800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933476.1	5.8e-129	100.00	VQ motif-containing protein 20-like [Cucurbita moschata]	[more]
KAG7021613.1	1.7e-128	99.17	VQ motif-containing protein 20, partial [Cucurbita argyrosperma subsp. argyrospe...	[more]
XP_023531062.1	3.8e-128	99.59	VQ motif-containing protein 20 [Cucurbita pepo subsp. pepo]	[more]
KAG6587652.1	3.8e-128	99.17	VQ motif-containing protein 20, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023007145.1	1.9e-127	98.76	VQ motif-containing protein 20-like [Cucurbita maxima]	[more]

BLAST of CmoCh11G002800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18360.1	3.6e-28	37.96	VQ motif-containing protein	[more]
AT1G21326.1	1.7e-06	40.86	VQ motif-containing protein	[more]
AT1G21320.1	1.1e-05	35.64	nucleotide binding;nucleic acid binding	[more]
AT1G68450.1	1.5e-05	34.91	VQ motif-containing protein	[more]
AT3G18690.1	3.6e-04	26.46	MAP kinase substrate 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 88..112 e-value: 1.7E-11 score: 43.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..143
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 1..238
IPR039832	VQ motif-containing protein 20	PANTHER	PTHR33143:SF4	VQ MOTIF-CONTAINING PROTEIN 20	coord: 1..238

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G002800.1	CmoCh11G002800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0043565	sequence-specific DNA binding