CmoCh11G000640 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G000640
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	28 kDa ribonucleoprotein, chloroplastic
Location	Cmo_Chr11: 301615 .. 303744 (-)
RNA-Seq Expression	CmoCh11G000640
Synteny	CmoCh11G000640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGATATTTTGTTAGGCGATAAGAACAGAGAGGCCATCTCTTTCTCTGTTCGCCCACTGCCTCTCTTATCCTTACCTCCTCCGCGTTGCTGTTAGGCCTCTCCTCTATAAACCCTTCTTCTTCAATCTCCTCCTCTCCTCTCCCACCTTCGACTTTCACAAAATGGCTTCTACTTCTGCCACTTCTATTTTGAAACCCTTATCCAAGGCAGACCCTTGCCTTCTATCCCTGCCCTCTGTATTCACCTACAGAGCCCCACAGTCCTTTCTCTCTTTCCCTTCCAAGTTCATCCCCTTTCACCTTTCTTCCTCCCATTCCTCTGTCTTTTTCCCCTCAAAGAAGAAACCCCATCTTTCTTCCCTCATTGCTTCTGTGGCCCAAGAAGACGACACCATCACCATTGACCAGAAACTCGCCGGCGACGAAGAAGGTTGGGGGGGTGAAGGCGAAGAGGTTGGAGGAAGTGAGGCCGAAGGGGGGCTTTTGGAGTTGGGAGAGGACGAGGAAGAAGAAGGGTCTTATGTTGAACCAAATGAAGATGCTAAGTTGTTCGTTGGGAATTTGCCTTATGACGTTGATAGTCAAAAGCTAGCAATGCTCTTTGAGAAGGTTGGAACTGTGGAGATTGCTGAGGTGAGTGTTAAGACTTTGGTGAATTCAATGTGATTTTGTTCATTTTGGTTTAAGCTTTTCATCTGGTTGTGTGTGTGGATTGTAGGTTGTTTACAACAGAGACACAGACCAGAGTCGTGGTTTTGGGTTTGTGACAATGAGTACTGTTGAAGAAGCTGAGAAAGCCGTGGATGCCTTAAACCGTTATGTAAGATCTTGATGTTCACTTTATCTTGTACACATGATTCAACAACGATGTGCTCTTCTTGAAACCTTATCTTTATTTTTGAACTTTTTTTGTTGAAGCATTTACTATCAAGCTTATCTCTGCATTTAACCTATTGGTTTAATTTTGAGGAGTTTAAACGATCTTCTTTCATGAATCTGAGTGCTTGGATGTGTAGTCTAGGAGTTAGCCATAAGGACCAACTTTTGACTGATGAGTTCGTTGAATTGTAGCACAAACTGTAACTTTTTGTTGGTTTGAATGTTTGATGATGAGATTTTTGTCCATCTTTACTATAAGATCCCACCTCGGTTGGAGAGGGAAACGAAACATTTCTTATAAAGGTGTGGAAACCTCTCCCTAGCATATACTTTTTAAAACCTTGAGGAGAAACTCAGGAAGGGAAAGCACAAAGAGACAATATCTTCTCTTGGTGGGCTTGGGCTGTTACATGTTACATATATTGATGCTGATAATTCTCTTAGATATGCCATTTATTTGTTATGAGCTTGAAGTTGGCCTATAGAGGCTCTGTTGGGCTGTTTCTGAAGTATCTCAACATATCAATTGGTTTTCTTCTTGAGAATTTTCCGTGTATAAATTGTATTTTCTGGGCTTGTAGGACTTATCAGGGAGGCTGTTGACGGTAAATAAGGCTGCCCCAAGAGGTTCTAGGCCAGAACCCACACCTCGAACATTTCAATCCGCTTACAGACTCTATGTAGGTAATCTTCCATGGGATGTTGATAATGCACGCTTGGAGCAGGTTTTCAGTGAACATGGCAAAGTAGTAGATGCTCGGGTTCTTTACGACCGGGACAGTGGCCGTTCTCGTGGCTTTGGCTTTGTTACCATGGCTGATGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGGTATGAAAATTGAGTTGCACTTAAACACACAACATAGACAACGAAGTTTGTGTACCGATTTAGAATGATTTTTCAAATGCTGAAAAACGTCTTTTTAACACTTTTTAACACTTTTGAACACTTTTTAACACTTTTGAACACTTTTGAACGTTTTTAAAAATCCTTTTTGGAAGTCATTTCAAACATACTCTTCCAGTTACTGAGACTCATCATCAAATGCTAACAAAAAGTTGTGAAATTTGAATTGTACAGAGTATAGATGGAAGGGCAATCAGAGTAAATGTTGCAGAGGAAAGACCTAGGCGCAACTTCTGAGGTGAACCAAGATGAATCCATGGACCTTTTTCTCTTGTTATGTGTTACCTTTTTTTGTTTCCAGGAAGTATAG

mRNA sequence

GCGATATTTTGTTAGGCGATAAGAACAGAGAGGCCATCTCTTTCTCTGTTCGCCCACTGCCTCTCTTATCCTTACCTCCTCCGCGTTGCTGTTAGGCCTCTCCTCTATAAACCCTTCTTCTTCAATCTCCTCCTCTCCTCTCCCACCTTCGACTTTCACAAAATGGCTTCTACTTCTGCCACTTCTATTTTGAAACCCTTATCCAAGGCAGACCCTTGCCTTCTATCCCTGCCCTCTGTATTCACCTACAGAGCCCCACAGTCCTTTCTCTCTTTCCCTTCCAAGTTCATCCCCTTTCACCTTTCTTCCTCCCATTCCTCTGTCTTTTTCCCCTCAAAGAAGAAACCCCATCTTTCTTCCCTCATTGCTTCTGTGGCCCAAGAAGACGACACCATCACCATTGACCAGAAACTCGCCGGCGACGAAGAAGGTTGGGGGGGTGAAGGCGAAGAGGTTGGAGGAAGTGAGGCCGAAGGGGGGCTTTTGGAGTTGGGAGAGGACGAGGAAGAAGAAGGGTCTTATGTTGAACCAAATGAAGATGCTAAGTTGTTCGTTGGGAATTTGCCTTATGACGTTGATAGTCAAAAGCTAGCAATGCTCTTTGAGAAGGTTGGAACTGTGGAGATTGCTGAGGTTGTTTACAACAGAGACACAGACCAGAGTCGTGGTTTTGGGTTTGTGACAATGAGTACTGTTGAAGAAGCTGAGAAAGCCGTGGATGCCTTAAACCGTTATGACTTATCAGGGAGGCTGTTGACGGTAAATAAGGCTGCCCCAAGAGGTTCTAGGCCAGAACCCACACCTCGAACATTTCAATCCGCTTACAGACTCTATGTAGGTAATCTTCCATGGGATGTTGATAATGCACGCTTGGAGCAGGTTTTCAGTGAACATGGCAAAGTAGTAGATGCTCGGGTTCTTTACGACCGGGACAGTGGCCGTTCTCGTGGCTTTGGCTTTGTTACCATGGCTGATGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGGAAGTATAG

Coding sequence (CDS)

ATGGCTTCTACTTCTGCCACTTCTATTTTGAAACCCTTATCCAAGGCAGACCCTTGCCTTCTATCCCTGCCCTCTGTATTCACCTACAGAGCCCCACAGTCCTTTCTCTCTTTCCCTTCCAAGTTCATCCCCTTTCACCTTTCTTCCTCCCATTCCTCTGTCTTTTTCCCCTCAAAGAAGAAACCCCATCTTTCTTCCCTCATTGCTTCTGTGGCCCAAGAAGACGACACCATCACCATTGACCAGAAACTCGCCGGCGACGAAGAAGGTTGGGGGGGTGAAGGCGAAGAGGTTGGAGGAAGTGAGGCCGAAGGGGGGCTTTTGGAGTTGGGAGAGGACGAGGAAGAAGAAGGGTCTTATGTTGAACCAAATGAAGATGCTAAGTTGTTCGTTGGGAATTTGCCTTATGACGTTGATAGTCAAAAGCTAGCAATGCTCTTTGAGAAGGTTGGAACTGTGGAGATTGCTGAGGTTGTTTACAACAGAGACACAGACCAGAGTCGTGGTTTTGGGTTTGTGACAATGAGTACTGTTGAAGAAGCTGAGAAAGCCGTGGATGCCTTAAACCGTTATGACTTATCAGGGAGGCTGTTGACGGTAAATAAGGCTGCCCCAAGAGGTTCTAGGCCAGAACCCACACCTCGAACATTTCAATCCGCTTACAGACTCTATGTAGGTAATCTTCCATGGGATGTTGATAATGCACGCTTGGAGCAGGTTTTCAGTGAACATGGCAAAGTAGTAGATGCTCGGGTTCTTTACGACCGGGACAGTGGCCGTTCTCGTGGCTTTGGCTTTGTTACCATGGCTGATGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGGAAGTATAG

Protein sequence

MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKKKPHLSSLIASVAQEDDTITIDQKLAGDEEGWGGEGEEVGGSEAEGGLLELGEDEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEEAEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYRLYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQEV

Homology

[Close]

BLAST of CmoCh11G000640 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.3e-77
Identity = 171/301 (56.81%), Postives = 207/301 (68.77%), Query Frame = 0


Query: 3   STSATSILKPLSKA-DPCLLSLPSVFTYRAPQSFLSFP------SKFIPFHLSSSHSSVF 62
           S +   I+KP S A + CL+SLP +F         ++P            HLS ++S   
Sbjct: 2   SCATKPIIKPSSMATNSCLISLPPLFATTTKSKSFAYPYLSNTLKPIKLLHLSCTYSPCI 61

Query: 63  FPSKKKPHLSSLIASVAQEDDTITIDQKLAGDEEG-------WGGEGEEVGGSEAEGGLL 122
              KKK  +S+L     +E++T+ +D +  G E G        G E EE G  EA G   
Sbjct: 62  LSPKKKTSVSAL----QEEENTLILDGQ--GQESGDLFNFEPSGEETEEEGFVEAVGDAG 121

Query: 123 ELGEDE--EEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRDTDQ 182
           E  E E  EEE  + EP EDAKLFVGNLPYDVDS+ LA LFE+ G VEIAEV+YNRDTDQ
Sbjct: 122 ESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQ 181

Query: 183 SRGFGFVTMSTVEEAEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYRLYVG 242
           SRGFGFVTMSTVEEAEKAV+  NRYD++GRLLTVNKAA RG RPE  PRTF+ +YR+YVG
Sbjct: 182 SRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVG 241

Query: 243 NLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQE 288
           N+PW +D+ARLEQ+FSEHGKVV ARV+YDR++GRSRGFGFVTMA E  M+DAIA LDGQ 
Sbjct: 242 NIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQS 296

[Close]

BLAST of CmoCh11G000640 vs. ExPASy Swiss-Prot
Match: P19682 (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 2.4e-76
Identity = 156/270 (57.78%), Postives = 199/270 (73.70%), Query Frame = 0


Query: 19  CLLSLPSVFTYRAPQSFLSFP---SKFIPFHLSSSHSSVFFPSKKKPHLSSLIASVAQED 78
           CL+SLP  FT    +S  S+P   ++  P  LSSS  ++   +K+     + ++ ++++D
Sbjct: 6   CLISLPPFFT--TTKSISSYPFLSTQLKPISLSSSLPTLLSLNKRTTQFPTFVSVLSEDD 65

Query: 79  DTITIDQKLAGDEEGWGGEGEEVGGSEAEGGLLELGEDEEEEGSYVEPNEDAKLFVGNLP 138
           +T+ +D     D+E  G     VG         E GE EE    Y EP+EDAKLFVGNLP
Sbjct: 66  NTLVLD-----DQEQGGDFPSFVG---------EAGETEE----YQEPSEDAKLFVGNLP 125

Query: 139 YDVDSQKLAMLFEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEEAEKAVDALNRYDLSG 198
           YD+DS+ LA LF++ G VEIAEV+YNR+TD+SRGFGFVTMSTVEEA+KAV+  ++YDL+G
Sbjct: 126 YDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNG 185

Query: 199 RLLTVNKAAPRGSRPEPTPRTFQSAYRLYVGNLPWDVDNARLEQVFSEHGKVVDARVLYD 258
           RLLTVNKAAPRGSRPE  PRTFQ  YR+YVGN+PWD+D+ARLEQVFSEHGKVV ARV++D
Sbjct: 186 RLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFD 245

Query: 259 RDSGRSRGFGFVTMADETGMNDAIAALDGQ 286
           R+SGRSRGFGFVTM+ E  M++AIA LDGQ
Sbjct: 246 RESGRSRGFGFVTMSSEAEMSEAIANLDGQ 255

[Close]

BLAST of CmoCh11G000640 vs. ExPASy Swiss-Prot
Match: Q04836 (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A PE=1 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.0e-74
Identity = 166/310 (53.55%), Postives = 210/310 (67.74%), Query Frame = 0


Query: 1   MASTSATSILKPLSKAD---PCLLSLPS----VFTYRAPQSFLSFPSKFIPFHLSSSHSS 60
           MAS+  TS LKPL+ AD     + S PS    + + R   S +S  +  I   LS S  S
Sbjct: 1   MASSIVTSSLKPLAMADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGRINLPLSFSRVS 60

Query: 61  VFFPSKKKPHLSSLIASVAQEDD--------TITIDQKLAGDEEGWGGEGEEVGGSEAEG 120
           +   +K     S  ++ VAQ  D        ++ +++     E     EG+E  G  +EG
Sbjct: 61  LSLKTKTHLKKSPFVSFVAQTSDWAEEGGEGSVAVEETENSLESQDVSEGDESEGDASEG 120

Query: 121 GLLELGEDE--------EEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAE 180
            + E  E E         E   + EP+E+AKLFVGNL YDV+SQ LAMLFE+ GTVEIAE
Sbjct: 121 DVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAE 180

Query: 181 VVYNRDTDQSRGFGFVTMSTVEEAEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTF 240
           V+YNR+TDQSRGFGFVTMS+V+EAE AV+  NRYDL+GRLLTVNKAAPRGSRPE  PR +
Sbjct: 181 VIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVY 240

Query: 241 QSAYRLYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMND 288
           + A+R+YVGNLPWDVDN RLEQ+FSEHGKVV+ARV+YDR++GRSRGFGFVTM+D   +N+
Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 300

[Close]

BLAST of CmoCh11G000640 vs. ExPASy Swiss-Prot
Match: Q9FGS0 (RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31B PE=1 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.9e-68
Identity = 141/247 (57.09%), Postives = 180/247 (72.87%), Query Frame = 0


Query: 45  FHLSSSHSSVF-FPSKKKP---HLSSLIASVAQEDDTITIDQKLAGDEEGWGGEGEEVGG 104
           F++SSS S  F F    +P    LS    ++      +T   + +   E   GE   +GG
Sbjct: 30  FNISSSESHRFNFSLSSRPVNLTLSLKSKTLRNSSPVVTFVSQTSNWAEEEEGEDGSIGG 89

Query: 105 SEAEGGLLELGEDEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVY 164
           +      ++   + E+   + EP E+AKLFVGNLPYDVDSQ LAMLFE+ GTVEI+EV+Y
Sbjct: 90  TSV---TVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIY 149

Query: 165 NRDTDQSRGFGFVTMSTVEEAEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSA 224
           NRDTDQSRGFGFVTMSTVEEAEKAV+  N ++++GR LTVN+AAPRGSRPE  PR + +A
Sbjct: 150 NRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAA 209

Query: 225 YRLYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIA 284
           +R+YVGNLPWDVD+ RLE++FSEHGKVVDARV+ DR++GRSRGFGFV M++E  +N AIA
Sbjct: 210 FRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIA 269

Query: 285 ALDGQEV 288
           ALDGQ +
Sbjct: 270 ALDGQNL 273

[Close]

BLAST of CmoCh11G000640 vs. ExPASy Swiss-Prot
Match: P28644 (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 3.6e-64
Identity = 133/203 (65.52%), Postives = 155/203 (76.35%), Query Frame = 0


Query: 87  DEEG---WGGEGEEVGGSEAEGGLLELGEDEEEEGSYVEPNEDAKLFVGNLPYDVDSQKL 146
           D EG   WG E +       EGG             + EP E+AKLFVGNLPYDVDS+KL
Sbjct: 23  DPEGAVSWGSETQVSDEGGVEGG-----------QGFSEPPEEAKLFVGNLPYDVDSEKL 82

Query: 147 AMLFEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEEAEKAVDALNRYDLSGRLLTVNKA 206
           A +F+  G VEIAEV+YNR+TD+SRGFGFVTMSTVEEAEKAV+ LN YD+ GR LTVNKA
Sbjct: 83  AGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKA 142

Query: 207 APRGSRPEPTPR-TFQSAYRLYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSR 266
           APRGS PE  PR  F+ + R+YVGNLPWDVD +RLEQ+FSEHGKVV ARV+ DR++GRSR
Sbjct: 143 APRGS-PERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSR 202

Query: 267 GFGFVTMADETGMNDAIAALDGQ 286
           GFGFVTM+ E+ +NDAIAALDGQ
Sbjct: 203 GFGFVTMSSESEVNDAIAALDGQ 213

[Close]

BLAST of CmoCh11G000640 vs. ExPASy TrEMBL
Match: A0A6J1F0A4 (28 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111437894 PE=4 SV=1)

HSP 1 Score: 555.8 bits (1431), Expect = 1.0e-154
Identity = 285/287 (99.30%), Postives = 286/287 (99.65%), Query Frame = 0


Query: 1   MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKK 60
           MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKK
Sbjct: 1   MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKK 60

Query: 61  KPHLSSLIASVAQEDDTITIDQKLAGDEEGWGGEGEEVGGSEAEGGLLELGEDEEEEGSY 120
           KPHLSSLIASVAQEDDTITIDQKLAGDEEGWGGEGEEVGGSEAEGGLLELGEDEEEEGSY
Sbjct: 61  KPHLSSLIASVAQEDDTITIDQKLAGDEEGWGGEGEEVGGSEAEGGLLELGEDEEEEGSY 120

Query: 121 VEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEE 180
           VEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEE
Sbjct: 121 VEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEE 180

Query: 181 AEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYRLYVGNLPWDVDNARLEQV 240
           AEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYRLYVGNLPWDVDNARLEQV
Sbjct: 181 AEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYRLYVGNLPWDVDNARLEQV 240

Query: 241 FSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQEV 288
           FSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQ +
Sbjct: 241 FSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSI 287

[Close]

BLAST of CmoCh11G000640 vs. ExPASy TrEMBL
Match: A0A6J1KKH1 (28 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111496092 PE=4 SV=1)

HSP 1 Score: 548.1 bits (1411), Expect = 2.2e-152
Identity = 282/287 (98.26%), Postives = 283/287 (98.61%), Query Frame = 0


Query: 1   MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKK 60
           MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKK
Sbjct: 1   MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKK 60

Query: 61  KPHLSSLIASVAQEDDTITIDQKLAGDEEGWGGEGEEVGGSEAEGGLLELGEDEEEEGSY 120
           KPHLSSLIASVAQEDDTITIDQKLAGDEEGW  EGE VGGSEAEGGLLELGEDEEEEGSY
Sbjct: 61  KPHLSSLIASVAQEDDTITIDQKLAGDEEGWESEGEAVGGSEAEGGLLELGEDEEEEGSY 120

Query: 121 VEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEE 180
           VEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEE
Sbjct: 121 VEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEE 180

Query: 181 AEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYRLYVGNLPWDVDNARLEQV 240
           AEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYRLYVGNLPWDVDNARLEQV
Sbjct: 181 AEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYRLYVGNLPWDVDNARLEQV 240

Query: 241 FSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQEV 288
           FSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQ +
Sbjct: 241 FSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSI 287

[Close]

BLAST of CmoCh11G000640 vs. ExPASy TrEMBL
Match: A0A6J1C316 (28 kDa ribonucleoprotein, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111006981 PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 7.0e-119
Identity = 245/321 (76.32%), Postives = 260/321 (81.00%), Query Frame = 0


Query: 1   MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHL-SSSHSSVFFPSK 60
           MASTSATSILKPLSKAD CLLSLPSVFT R P SFLSFPSK I FHL SSSHSS F  SK
Sbjct: 1   MASTSATSILKPLSKADSCLLSLPSVFTCRPPHSFLSFPSKLIRFHLSSSSHSSPFSLSK 60

Query: 61  KKPHLSSLIASV------AQEDDTITIDQKLAGDEE----------------------GW 120
           KKPH SSL++ V      AQEDDTITID KL GDEE                       W
Sbjct: 61  KKPHPSSLVSFVAQTSDWAQEDDTITIDPKLGGDEEEEDEQGPHWENQELSETESRISDW 120

Query: 121 GGEGEEVGGSEA-----EGGLLELGEDEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAML 180
            GE E+ GGSEA     EGGLLE  E+EEEEGSY EPNEDAKLFVGNLPYDVDSQKLAM+
Sbjct: 121 EGEAED-GGSEAEGEDGEGGLLE--EEEEEEGSYEEPNEDAKLFVGNLPYDVDSQKLAMI 180

Query: 181 FEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEEAEKAVDALNRYDLSGRLLTVNKAAPR 240
           F K GTVEIAEV+YNR+TDQSRGFGFVTMSTVEEAEKAVD  NRY+L GRLLTVNKAAPR
Sbjct: 181 FGKAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELEGRLLTVNKAAPR 240

Query: 241 GSRPEPTPRTFQSAYRLYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGF 288
           G+RPE TPRTFQS++R+YVGNLPWDVDNARLEQVFSEHGKVV+ARVLYDRD+GRSRGFGF
Sbjct: 241 GARPERTPRTFQSSFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDTGRSRGFGF 300

[Close]

BLAST of CmoCh11G000640 vs. ExPASy TrEMBL
Match: A0A5D3BIH5 (28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00930 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.7e-115
Identity = 231/313 (73.80%), Postives = 252/313 (80.51%), Query Frame = 0


Query: 1   MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHL--SSSHSSVFFPS 60
           MASTSATS+ KPLSK D C LSLPS+FT R P +FLSFPSKFIPFHL  SSSHSS F+PS
Sbjct: 1   MASTSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSHSSCFYPS 60

Query: 61  KKKPHLSSL--IASVAQEDDTITIDQKLAGDEEG----------------------WGGE 120
           KKKPHL S+   +  AQEDDT+TID KL  DE+                       W GE
Sbjct: 61  KKKPHLPSVAQTSDWAQEDDTMTIDPKLDNDEDAEEEGGPHWENEELSETESRISDWEGE 120

Query: 121 GEEVGGSEAEGGLLELGEDEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVE 180
           GE+ GGSEAE G  E  E+E E+G Y EPNEDAKLFVGNLPYD+DS+KLAMLFEK GTVE
Sbjct: 121 GED-GGSEAEVGGDEEEEEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVE 180

Query: 181 IAEVVYNRDTDQSRGFGFVTMSTVEEAEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTP 240
           IAEV+YNR+TD+SRGFGFVTMSTVEEAEKAVD  NRY+LSGRLLTVNKAAPRG+R E  P
Sbjct: 181 IAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGTRQERQP 240

Query: 241 RTFQSAYRLYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETG 288
           R FQ A+R+YVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETG
Sbjct: 241 RPFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETG 300

[Close]

BLAST of CmoCh11G000640 vs. ExPASy TrEMBL
Match: A0A5A7USX4 (Ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00900 PE=4 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 2.6e-113
Identity = 232/317 (73.19%), Postives = 252/317 (79.50%), Query Frame = 0


Query: 1   MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHL--SSSHSSVFFPS 60
           MASTSATS+ K LSK D C LSLPS+FT R P +FLSFPSKFIPFHL  SSSHSS F+PS
Sbjct: 1   MASTSATSLFKTLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSHSSCFYPS 60

Query: 61  KKKPHLSSL--IASVAQEDDTITIDQKLAGDEEG----------------------WGGE 120
           KKKPHL S+   +  AQEDDT+TID KL  DE+                       W GE
Sbjct: 61  KKKPHLPSVAQTSDWAQEDDTMTIDPKLDNDEDAEEEGGPHWENEELSETESRISDWEGE 120

Query: 121 GE-EVGGSEAEGGLLELGEDEEEEGS---YVEPNEDAKLFVGNLPYDVDSQKLAMLFEKV 180
           GE E GGSEAE G    G++EEEEG    Y EPNEDAKLFVGNLPYD+DS+KLAMLFEK 
Sbjct: 121 GEGEDGGSEAEVG----GDEEEEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKA 180

Query: 181 GTVEIAEVVYNRDTDQSRGFGFVTMSTVEEAEKAVDALNRYDLSGRLLTVNKAAPRGSRP 240
           GTVEIAEV+YNR+TD+SRGFGFVTMSTVEEAEKAVD  NRY+LSGRLLTVNKAAPRG+R 
Sbjct: 181 GTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGTRQ 240

Query: 241 EPTPRTFQSAYRLYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA 288
           E  PR FQ A+R+YVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA
Sbjct: 241 ERQPRPFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA 300

[Close]

BLAST of CmoCh11G000640 vs. NCBI nr
Match: XP_022931735.1 (28 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata])

HSP 1 Score: 555.8 bits (1431), Expect = 2.1e-154
Identity = 285/287 (99.30%), Postives = 286/287 (99.65%), Query Frame = 0


Query: 1   MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKK 60
           MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKK
Sbjct: 1   MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKK 60

Query: 61  KPHLSSLIASVAQEDDTITIDQKLAGDEEGWGGEGEEVGGSEAEGGLLELGEDEEEEGSY 120
           KPHLSSLIASVAQEDDTITIDQKLAGDEEGWGGEGEEVGGSEAEGGLLELGEDEEEEGSY
Sbjct: 61  KPHLSSLIASVAQEDDTITIDQKLAGDEEGWGGEGEEVGGSEAEGGLLELGEDEEEEGSY 120

Query: 121 VEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEE 180
           VEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEE
Sbjct: 121 VEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEE 180

Query: 181 AEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYRLYVGNLPWDVDNARLEQV 240
           AEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYRLYVGNLPWDVDNARLEQV
Sbjct: 181 AEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYRLYVGNLPWDVDNARLEQV 240

Query: 241 FSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQEV 288
           FSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQ +
Sbjct: 241 FSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSI 287

[Close]

BLAST of CmoCh11G000640 vs. NCBI nr
Match: KAG6587437.1 (hypothetical protein SDJN03_16002, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021420.1 hypothetical protein SDJN02_15145 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 550.4 bits (1417), Expect = 8.9e-153
Identity = 282/287 (98.26%), Postives = 285/287 (99.30%), Query Frame = 0


Query: 1   MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKK 60
           MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKK
Sbjct: 1   MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKK 60

Query: 61  KPHLSSLIASVAQEDDTITIDQKLAGDEEGWGGEGEEVGGSEAEGGLLELGEDEEEEGSY 120
           KPHLSSLIASVAQEDDTITIDQKLAGDE+GW GEGEEVGGSEAEGGLLELGED+EEEGSY
Sbjct: 61  KPHLSSLIASVAQEDDTITIDQKLAGDEQGWEGEGEEVGGSEAEGGLLELGEDDEEEGSY 120

Query: 121 VEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEE 180
           VEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEE
Sbjct: 121 VEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEE 180

Query: 181 AEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYRLYVGNLPWDVDNARLEQV 240
           AEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYRLYVGNLPWDVDNARLEQV
Sbjct: 181 AEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYRLYVGNLPWDVDNARLEQV 240

Query: 241 FSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQEV 288
           FSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQ +
Sbjct: 241 FSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSI 287

[Close]

BLAST of CmoCh11G000640 vs. NCBI nr
Match: XP_023530762.1 (28 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 548.9 bits (1413), Expect = 2.6e-152
Identity = 282/287 (98.26%), Postives = 284/287 (98.95%), Query Frame = 0


Query: 1   MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKK 60
           MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKK
Sbjct: 1   MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKK 60

Query: 61  KPHLSSLIASVAQEDDTITIDQKLAGDEEGWGGEGEEVGGSEAEGGLLELGEDEEEEGSY 120
           KPHLSSLIASVAQEDDTITIDQKLAGDEEGW  EGEEVGGSEAEGGLLELGEDEEEEGSY
Sbjct: 61  KPHLSSLIASVAQEDDTITIDQKLAGDEEGWEAEGEEVGGSEAEGGLLELGEDEEEEGSY 120

Query: 121 VEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEE 180
           VEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEE
Sbjct: 121 VEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEE 180

Query: 181 AEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYRLYVGNLPWDVDNARLEQV 240
           AEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYRLYVGNLPWDVDNARLEQV
Sbjct: 181 AEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYRLYVGNLPWDVDNARLEQV 240

Query: 241 FSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQEV 288
           FSEHGKVVDARVL+DRDSGRSRGFGFVTMADETGMNDAIAALDGQ +
Sbjct: 241 FSEHGKVVDARVLFDRDSGRSRGFGFVTMADETGMNDAIAALDGQSI 287

[Close]

BLAST of CmoCh11G000640 vs. NCBI nr
Match: XP_023002146.1 (28 kDa ribonucleoprotein, chloroplastic [Cucurbita maxima])

HSP 1 Score: 548.1 bits (1411), Expect = 4.4e-152
Identity = 282/287 (98.26%), Postives = 283/287 (98.61%), Query Frame = 0


Query: 1   MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKK 60
           MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKK
Sbjct: 1   MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKK 60

Query: 61  KPHLSSLIASVAQEDDTITIDQKLAGDEEGWGGEGEEVGGSEAEGGLLELGEDEEEEGSY 120
           KPHLSSLIASVAQEDDTITIDQKLAGDEEGW  EGE VGGSEAEGGLLELGEDEEEEGSY
Sbjct: 61  KPHLSSLIASVAQEDDTITIDQKLAGDEEGWESEGEAVGGSEAEGGLLELGEDEEEEGSY 120

Query: 121 VEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEE 180
           VEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEE
Sbjct: 121 VEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEE 180

Query: 181 AEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYRLYVGNLPWDVDNARLEQV 240
           AEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYRLYVGNLPWDVDNARLEQV
Sbjct: 181 AEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYRLYVGNLPWDVDNARLEQV 240

Query: 241 FSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQEV 288
           FSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQ +
Sbjct: 241 FSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSI 287

[Close]

BLAST of CmoCh11G000640 vs. NCBI nr
Match: XP_022134798.1 (28 kDa ribonucleoprotein, chloroplastic-like [Momordica charantia])

HSP 1 Score: 436.8 bits (1122), Expect = 1.4e-118
Identity = 245/321 (76.32%), Postives = 260/321 (81.00%), Query Frame = 0


Query: 1   MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHL-SSSHSSVFFPSK 60
           MASTSATSILKPLSKAD CLLSLPSVFT R P SFLSFPSK I FHL SSSHSS F  SK
Sbjct: 1   MASTSATSILKPLSKADSCLLSLPSVFTCRPPHSFLSFPSKLIRFHLSSSSHSSPFSLSK 60

Query: 61  KKPHLSSLIASV------AQEDDTITIDQKLAGDEE----------------------GW 120
           KKPH SSL++ V      AQEDDTITID KL GDEE                       W
Sbjct: 61  KKPHPSSLVSFVAQTSDWAQEDDTITIDPKLGGDEEEEDEQGPHWENQELSETESRISDW 120

Query: 121 GGEGEEVGGSEA-----EGGLLELGEDEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAML 180
            GE E+ GGSEA     EGGLLE  E+EEEEGSY EPNEDAKLFVGNLPYDVDSQKLAM+
Sbjct: 121 EGEAED-GGSEAEGEDGEGGLLE--EEEEEEGSYEEPNEDAKLFVGNLPYDVDSQKLAMI 180

Query: 181 FEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEEAEKAVDALNRYDLSGRLLTVNKAAPR 240
           F K GTVEIAEV+YNR+TDQSRGFGFVTMSTVEEAEKAVD  NRY+L GRLLTVNKAAPR
Sbjct: 181 FGKAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELEGRLLTVNKAAPR 240

Query: 241 GSRPEPTPRTFQSAYRLYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGF 288
           G+RPE TPRTFQS++R+YVGNLPWDVDNARLEQVFSEHGKVV+ARVLYDRD+GRSRGFGF
Sbjct: 241 GARPERTPRTFQSSFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDTGRSRGFGF 300

[Close]

BLAST of CmoCh11G000640 vs. TAIR 10
Match: AT4G24770.1 (31-kDa RNA binding protein )

HSP 1 Score: 281.6 bits (719), Expect = 7.2e-76
Identity = 166/310 (53.55%), Postives = 210/310 (67.74%), Query Frame = 0


Query: 1   MASTSATSILKPLSKAD---PCLLSLPS----VFTYRAPQSFLSFPSKFIPFHLSSSHSS 60
           MAS+  TS LKPL+ AD     + S PS    + + R   S +S  +  I   LS S  S
Sbjct: 1   MASSIVTSSLKPLAMADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGRINLPLSFSRVS 60

Query: 61  VFFPSKKKPHLSSLIASVAQEDD--------TITIDQKLAGDEEGWGGEGEEVGGSEAEG 120
           +   +K     S  ++ VAQ  D        ++ +++     E     EG+E  G  +EG
Sbjct: 61  LSLKTKTHLKKSPFVSFVAQTSDWAEEGGEGSVAVEETENSLESQDVSEGDESEGDASEG 120

Query: 121 GLLELGEDE--------EEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAE 180
            + E  E E         E   + EP+E+AKLFVGNL YDV+SQ LAMLFE+ GTVEIAE
Sbjct: 121 DVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAE 180

Query: 181 VVYNRDTDQSRGFGFVTMSTVEEAEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTF 240
           V+YNR+TDQSRGFGFVTMS+V+EAE AV+  NRYDL+GRLLTVNKAAPRGSRPE  PR +
Sbjct: 181 VIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVY 240

Query: 241 QSAYRLYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMND 288
           + A+R+YVGNLPWDVDN RLEQ+FSEHGKVV+ARV+YDR++GRSRGFGFVTM+D   +N+
Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 300

[Close]

BLAST of CmoCh11G000640 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B )

HSP 1 Score: 260.8 bits (665), Expect = 1.3e-69
Identity = 141/247 (57.09%), Postives = 180/247 (72.87%), Query Frame = 0


Query: 45  FHLSSSHSSVF-FPSKKKP---HLSSLIASVAQEDDTITIDQKLAGDEEGWGGEGEEVGG 104
           F++SSS S  F F    +P    LS    ++      +T   + +   E   GE   +GG
Sbjct: 30  FNISSSESHRFNFSLSSRPVNLTLSLKSKTLRNSSPVVTFVSQTSNWAEEEEGEDGSIGG 89

Query: 105 SEAEGGLLELGEDEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVY 164
           +      ++   + E+   + EP E+AKLFVGNLPYDVDSQ LAMLFE+ GTVEI+EV+Y
Sbjct: 90  TSV---TVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIY 149

Query: 165 NRDTDQSRGFGFVTMSTVEEAEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSA 224
           NRDTDQSRGFGFVTMSTVEEAEKAV+  N ++++GR LTVN+AAPRGSRPE  PR + +A
Sbjct: 150 NRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAA 209

Query: 225 YRLYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIA 284
           +R+YVGNLPWDVD+ RLE++FSEHGKVVDARV+ DR++GRSRGFGFV M++E  +N AIA
Sbjct: 210 FRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIA 269

Query: 285 ALDGQEV 288
           ALDGQ +
Sbjct: 270 ALDGQNL 273

[Close]

BLAST of CmoCh11G000640 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 169.1 bits (427), Expect = 5.2e-42
Identity = 94/203 (46.31%), Postives = 123/203 (60.59%), Query Frame = 0


Query: 104 EGGLLELGEDEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRD 163
           E G  ++   +E+  S      D KLFVGNLP++VDS +LA LFE  G VE+ EV+Y++ 
Sbjct: 73  EDGFADVAPPKEQSFS-----ADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKI 132

Query: 164 TDQSRGFGFVTMSTVEEAEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAY-- 223
           T +SRGFGFVTMS+V E E A    N Y+L GR L VN   P   R +   R  +S++  
Sbjct: 133 TGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGS 192

Query: 224 -----------------RLYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGF 283
                            R+YVGNL W VD+  LE +FSE GKVV+ARV+YDRDSGRS+GF
Sbjct: 193 SGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGF 252

Query: 284 GFVTMADETGMNDAIAALDGQEV 288
           GFVT      + +AI +LDG ++
Sbjct: 253 GFVTYDSSQEVQNAIKSLDGADL 270

[Close]

BLAST of CmoCh11G000640 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 142.5 bits (358), Expect = 5.2e-34
Identity = 79/184 (42.93%), Postives = 115/184 (62.50%), Query Frame = 0


Query: 108 LELGEDEEEEG--SYVEPNE--DAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRD 167
           ++L E+E+++G  + ++P    + KL+ GNLPY+VDS  LA + +     E+ EV+YNRD
Sbjct: 62  VKLEEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRD 121

Query: 168 TDQSRGFGFVTMSTVEEAEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYRL 227
           T QSRGF FVTMS VE+    +D L+  +  GR L VN A     +P   P   ++ ++L
Sbjct: 122 TGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADK--PKPNKEPLYPETEHKL 181

Query: 228 YVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALD 287
           +VGNL W V +  L   F E G VV ARV++D D+GRSRG+GFV  + +  M  A+ +LD
Sbjct: 182 FVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLD 241

[Close]

BLAST of CmoCh11G000640 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 139.4 bits (350), Expect = 4.4e-33
Identity = 81/228 (35.53%), Postives = 133/228 (58.33%), Query Frame = 0


Query: 69  ASVAQEDDTITIDQKLAGDEEGWGGEGEEVGGSEAEGGLLELGEDEEEEGSYVEPNEDAK 128
           AS A ++   +++++   +EE  G EGEE              E EEE+ +     E+ +
Sbjct: 74  ASSADDEIQASVEEEEEVEEE--GDEGEE--------------EVEEEKQTTQASGEEGR 133

Query: 129 LFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEEAEKAVDAL 188
           L+VGNLPY + S +L+ +F + GTV   ++VY++ TD+SRGFGFVTM ++EEA++A+   
Sbjct: 134 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 193

Query: 189 NRYDLSGRLLTVN-KAAPRGSRPE-------PTPRTF-QSAYRLYVGNLPWDVDNARLEQ 248
           N   + GR + VN    PRG   E          R++  S +++Y GNL W++ +  L+ 
Sbjct: 194 NSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKD 253

Query: 249 VFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQEV 288
            F +   V+ A+V+Y+R++GRSRGFGF++      +  A+A ++G EV
Sbjct: 254 AFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEV 285

The following BLAST results are available for this feature:

BLAST of CmoCh11G000640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19683	1.3e-77	56.81	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P19682	2.4e-76	57.78	28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q04836	1.0e-74	53.55	31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A...	[more]
Q9FGS0	1.9e-68	57.09	RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31...	[more]
P28644	3.6e-64	65.52	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1	[more]

BLAST of CmoCh11G000640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0A4	1.0e-154	99.30	28 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1KKH1	2.2e-152	98.26	28 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111496...	[more]
A0A6J1C316	7.0e-119	76.32	28 kDa ribonucleoprotein, chloroplastic-like OS=Momordica charantia OX=3673 GN=L...	[more]
A0A5D3BIH5	2.7e-115	73.80	28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7USX4	2.6e-113	73.19	Ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00...	[more]

BLAST of CmoCh11G000640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931735.1	2.1e-154	99.30	28 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata]	[more]
KAG6587437.1	8.9e-153	98.26	hypothetical protein SDJN03_16002, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023530762.1	2.6e-152	98.26	28 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_023002146.1	4.4e-152	98.26	28 kDa ribonucleoprotein, chloroplastic [Cucurbita maxima]	[more]
XP_022134798.1	1.4e-118	76.32	28 kDa ribonucleoprotein, chloroplastic-like [Momordica charantia]	[more]

BLAST of CmoCh11G000640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24770.1	7.2e-76	53.55	31-kDa RNA binding protein	[more]
AT5G50250.1	1.3e-69	57.09	chloroplast RNA-binding protein 31B	[more]
AT2G37220.1	5.2e-42	46.31	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G60000.1	5.2e-34	42.93	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	4.4e-33	35.53	chloroplast RNA-binding protein 33	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 128..201 e-value: 2.1E-26 score: 103.7 coord: 222..287 e-value: 3.6E-18 score: 76.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 223..287 e-value: 1.1E-18 score: 66.8 coord: 129..198 e-value: 2.8E-21 score: 75.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 221..287 score: 17.47229
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 127..205 score: 18.73439
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 209..287 e-value: 9.0E-24 score: 86.2 coord: 81..208 e-value: 1.3E-26 score: 95.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..105
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..286
None	No IPR available	PANTHER	PTHR48025:SF8	RIBONUCLEOPROTEIN	coord: 1..286
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 128..205 e-value: 2.77644E-36 score: 122.722
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 215..286
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 123..216

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G000640.1	CmoCh11G000640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding