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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGACGAATGAGTACTTCGAACTCCCCAAAGATGAATTCAAAGGGAATTGTTTTACTTGCTTCTATGGATTTGGATTTTGTCCGAAAACAAAGCAATACAAAGTAGTAAGAAGCTTTACTGTTCGTGATAGAAACTCTATCGTCCATAACTACAAAACAGAGATTTTTGCCTTTGGGACCCGGCCGGAATGGACGCGTATTGAGTCACCGACTTATTCTTTTAATGGATGTCATGGTGTTTACTCAAACGGAGGGCTGCATTGGATTGGACAAAATAATCTTGGTCGGGATGTTATTTATCGTCTAAATATGGAAGATGAGAAATACGTGCAGATTCCTTTTCCTAATGATGACGGTTATTTTCCTTGTATTGCAATATTTAACGGTGCAATTCATTTAACTCTTTCTATGGAGGAGTACGAGTATAGAGTGTGGAAGATGAAAGAAGATGGTTCGTGGATTAAAGCATTTAGTGTCATCGCACCAGATATCAATAAAAATATACTTTCCTTCTCAAAATCGACCGTGGAACAGATTAAAATATGTAAAGATGGAAGGATCCTGTGTCTTTGGGCTGGAGTTGAATTAGTATTGTATAATCCGACGACCAAGAAGATGGAGAAGTTAATAGATGATACAACTGTGAGAGATTTTTCAGTTCACAGCATTGATTGTTTTAATTTTAATGCTCTTCCAGATATGTTAA mRNA sequence ATGACGAATGAGTACTTCGAACTCCCCAAAGATGAATTCAAAGGGAATTGTTTTACTTGCTTCTATGGATTTGGATTTTGTCCGAAAACAAAGCAATACAAAGTAGTAAGAAGCTTTACTGTTCGTGATAGAAACTCTATCGTCCATAACTACAAAACAGAGATTTTTGCCTTTGGGACCCGGCCGGAATGGACGCGTATTGAGTCACCGACTTATTCTTTTAATGGATGTCATGGTGTTTACTCAAACGGAGGGCTGCATTGGATTGGACAAAATAATCTTGGTCGGGATGTTATTTATCGTCTAAATATGGAAGATGAGAAATACGTGCAGATTCCTTTTCCTAATGATGACGGTTATTTTCCTTGTATTGCAATATTTAACGGTGCAATTCATTTAACTCTTTCTATGGAGGAGTACGAGTATAGAGTGTGGAAGATGAAAGAAGATGGTTCGTGGATTAAAGCATTTAGTGTCATCGCACCAGATATCAATAAAAATATACTTTCCTTCTCAAAATCGACCGTGGAACAGATTAAAATATGTAAAGATGGAAGGATCCTGTGTCTTTGGGCTGGAGTTGAATTAGTATTGTATAATCCGACGACCAAGAAGATGGAGAAGTTAATAGATGATACAACTATATGTTAA Coding sequence (CDS) ATGACGAATGAGTACTTCGAACTCCCCAAAGATGAATTCAAAGGGAATTGTTTTACTTGCTTCTATGGATTTGGATTTTGTCCGAAAACAAAGCAATACAAAGTAGTAAGAAGCTTTACTGTTCGTGATAGAAACTCTATCGTCCATAACTACAAAACAGAGATTTTTGCCTTTGGGACCCGGCCGGAATGGACGCGTATTGAGTCACCGACTTATTCTTTTAATGGATGTCATGGTGTTTACTCAAACGGAGGGCTGCATTGGATTGGACAAAATAATCTTGGTCGGGATGTTATTTATCGTCTAAATATGGAAGATGAGAAATACGTGCAGATTCCTTTTCCTAATGATGACGGTTATTTTCCTTGTATTGCAATATTTAACGGTGCAATTCATTTAACTCTTTCTATGGAGGAGTACGAGTATAGAGTGTGGAAGATGAAAGAAGATGGTTCGTGGATTAAAGCATTTAGTGTCATCGCACCAGATATCAATAAAAATATACTTTCCTTCTCAAAATCGACCGTGGAACAGATTAAAATATGTAAAGATGGAAGGATCCTGTGTCTTTGGGCTGGAGTTGAATTAGTATTGTATAATCCGACGACCAAGAAGATGGAGAAGTTAATAGATGATACAACTATATGTTAA Protein sequence MTNEYFELPKDEFKGNCFTCFYGFGFCPKTKQYKVVRSFTVRDRNSIVHNYKTEIFAFGTRPEWTRIESPTYSFNGCHGVYSNGGLHWIGQNNLGRDVIYRLNMEDEKYVQIPFPNDDGYFPCIAIFNGAIHLTLSMEEYEYRVWKMKEDGSWIKAFSVIAPDINKNILSFSKSTVEQIKICKDGRILCLWAGVELVLYNPTTKKMEKLIDDTTIC
Homology
BLAST of CmoCh10G011860 vs. ExPASy TrEMBL
Match: A0A6J1HDZ2 (F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462000 PE=4 SV=1) HSP 1 Score: 424.1 bits (1089), Expect = 3.5e-115 Identity = 193/214 (90.19%), Postives = 202/214 (94.39%), Query Frame = 0 Query: 1 MTNEYFELPKDEFKGNCFTCFYGFGFCPKTKQYKVVRSFTVRDRNSIVHNYKTEIFAFGT 60 +TNEYFELPKD+FKGN FTC+YGFGFCPKTKQYKVVRS TVRDRNSI+HNYKTEIFAFGT Sbjct: 143 ITNEYFELPKDKFKGNWFTCYYGFGFCPKTKQYKVVRSSTVRDRNSIIHNYKTEIFAFGT 202
Query: 61 RPEWTRIESPTYSFNGCHGVYSNGGLHWIGQNNLGRDVIYRLNMEDEKYVQIPFPNDDGY 120 RPEWTRIESPT SFNGCHGVY NGGLHWIGQNNLG DVIYRLNMEDEKY QIPFP+DDGY Sbjct: 203 RPEWTRIESPTCSFNGCHGVYLNGGLHWIGQNNLGPDVIYRLNMEDEKYEQIPFPDDDGY 262
Query: 121 FPCIAIFNGAIHLTLSMEEYEYRVWKMKEDGSWIKAFSVIAPDINKNILSFSKSTVEQIK 180 FPCI IFNGAIHLTLSME Y+YRVWKMKEDG WIKAFSVI PD+NKNILSFSKSTVE IK Sbjct: 263 FPCIGIFNGAIHLTLSMEGYKYRVWKMKEDGLWIKAFSVIIPDVNKNILSFSKSTVEPIK 322
Query: 181 ICKDGRILCLWAGVELVLYNPTTKKMEKLIDDTT 215 ICKDG+ILCLWAG EL+LYNPTTKKMEKLIDDTT Sbjct: 323 ICKDGKILCLWAGAELMLYNPTTKKMEKLIDDTT 356
BLAST of CmoCh10G011860 vs. ExPASy TrEMBL
Match: A0A6J1F4F5 (F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111440549 PE=4 SV=1) HSP 1 Score: 413.3 bits (1061), Expect = 6.2e-112 Identity = 189/214 (88.32%), Postives = 200/214 (93.46%), Query Frame = 0 Query: 1 MTNEYFELPKDEFKGNCFTCFYGFGFCPKTKQYKVVRSFTVRDRNSIVHNYKTEIFAFGT 60 +TNEYFELPKD++KGN FTC YGFGFCPKTKQYKVVRS TVRDRNSI+HNYKTEIFAFGT Sbjct: 146 ITNEYFELPKDKYKGNWFTCCYGFGFCPKTKQYKVVRSSTVRDRNSIIHNYKTEIFAFGT 205
Query: 61 RPEWTRIESPTYSFNGCHGVYSNGGLHWIGQNNLGRDVIYRLNMEDEKYVQIPFPNDDGY 120 RPEWT+IESPT SFNGCHGVY NGGLHWIGQNNLG DVIYRLNMEDEKY QIPFP+DDGY Sbjct: 206 RPEWTQIESPTCSFNGCHGVYLNGGLHWIGQNNLGPDVIYRLNMEDEKYEQIPFPSDDGY 265
Query: 121 FPCIAIFNGAIHLTLSMEEYEYRVWKMKEDGSWIKAFSVIAPDINKNILSFSKSTVEQIK 180 FPCI IFNGAI+LTLS+E Y+YRVWKMKEDG WIKAFSVI P +NKNILSFSKSTVE IK Sbjct: 266 FPCIGIFNGAINLTLSVEGYKYRVWKMKEDGLWIKAFSVIVPYVNKNILSFSKSTVEPIK 325
Query: 181 ICKDGRILCLWAGVELVLYNPTTKKMEKLIDDTT 215 ICKDG+ILCLWAG ELVLYNPTTKKMEKLIDDTT Sbjct: 326 ICKDGKILCLWAGAELVLYNPTTKKMEKLIDDTT 359
BLAST of CmoCh10G011860 vs. ExPASy TrEMBL
Match: A0A6J1HBS1 (F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462004 PE=4 SV=1) HSP 1 Score: 382.9 bits (982), Expect = 9.0e-103 Identity = 174/215 (80.93%), Postives = 193/215 (89.77%), Query Frame = 0 Query: 1 MTNEYFELPKDEFKGNCFTCFYGFGFCPKTKQYKVVRSFTVRDRNSIVHNYKTEIFAFGT 60 MTNEYFE+PKDEFKGN TC YGFGFCPKTK YKV+R+ TV DRNSIVHNYK+EIFAFGT Sbjct: 143 MTNEYFEVPKDEFKGNWLTCSYGFGFCPKTKHYKVIRNSTVDDRNSIVHNYKSEIFAFGT 202
Query: 61 RPEWTRIESPTYSFNGCHGVYSNGGLHWIGQNNLGRDVIYRLNMEDEKYVQIPFPNDDGY 120 R EWTRIESP+ SF+GCHGVY NGGLHW+GQN+L RDVIYRLNMEDEKY QIPFPNDDGY Sbjct: 203 RQEWTRIESPSCSFHGCHGVYLNGGLHWVGQNDLRRDVIYRLNMEDEKYEQIPFPNDDGY 262
Query: 121 FPCIAIFNGAIHLTLSMEEYEYRVWKMKEDGSWIKAFSVIAPDINKNILSFSKSTVEQIK 180 FP I +FNGA+HLTLSMEEYEYR+WKMKEDGSWIK+FSVI P KN+LSFSKSTVEQIK Sbjct: 263 FPYIRVFNGALHLTLSMEEYEYRIWKMKEDGSWIKSFSVIIP--TKNVLSFSKSTVEQIK 322
Query: 181 ICKDGRILCLWAGVELVLYNPTTKKMEKLIDDTTI 216 KDG+ILCLWAG +LVLY+P T+KMEKL+DDT + Sbjct: 323 TGKDGKILCLWAGAQLVLYDPKTEKMEKLMDDTIV 355
BLAST of CmoCh10G011860 vs. ExPASy TrEMBL
Match: A0A6J1HBS8 (F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462010 PE=4 SV=1) HSP 1 Score: 381.7 bits (979), Expect = 2.0e-102 Identity = 171/213 (80.28%), Postives = 190/213 (89.20%), Query Frame = 0 Query: 1 MTNEYFELPKDEFKGNCFTCFYGFGFCPKTKQYKVVRSFTVRDRNSIVHNYKTEIFAFGT 60 MTNEYFELPKDEFKGN TC YGFGFCPKTK YKVVR+ TV DRNS V NYK+EIFAFGT Sbjct: 143 MTNEYFELPKDEFKGNWLTCSYGFGFCPKTKHYKVVRNSTVEDRNSTV-NYKSEIFAFGT 202
Query: 61 RPEWTRIESPTYSFNGCHGVYSNGGLHWIGQNNLGRDVIYRLNMEDEKYVQIPFPNDDGY 120 R EWTRIESP+YSFNGCHGVY NGGLHW+GQ++L DVIYRLNMEDEKY IPFPNDDGY Sbjct: 203 RQEWTRIESPSYSFNGCHGVYLNGGLHWVGQDDLHHDVIYRLNMEDEKYEHIPFPNDDGY 262
Query: 121 FPCIAIFNGAIHLTLSMEEYEYRVWKMKEDGSWIKAFSVIAPDINKNILSFSKSTVEQIK 180 FPCI +FNGA+HLTLSME +EY +WKMKEDGSWIKAFS PD+ KNILSFS+ST+EQ+K Sbjct: 263 FPCIGVFNGALHLTLSMEGHEYTMWKMKEDGSWIKAFSTSVPDVGKNILSFSQSTLEQVK 322
Query: 181 ICKDGRILCLWAGVELVLYNPTTKKMEKLIDDT 214 ICKDG+ILC+WAG ELVLY+P T+KMEKL+DDT Sbjct: 323 ICKDGKILCVWAGAELVLYDPKTEKMEKLMDDT 354
BLAST of CmoCh10G011860 vs. ExPASy TrEMBL
Match: A0A6J1HDZ8 (F-box protein CPR30-like OS=Cucurbita moschata OX=3662 GN=LOC111462005 PE=4 SV=1) HSP 1 Score: 380.9 bits (977), Expect = 3.4e-102 Identity = 171/214 (79.91%), Postives = 192/214 (89.72%), Query Frame = 0 Query: 1 MTNEYFELPKDEFKGNCFTCFYGFGFCPKTKQYKVVRSFTVRDRNSIVH-NYKTEIFAFG 60 MTNEYFELPKDEFKGN TC YGFGFCPKTK YKVVR+FTV DRNS VH NYK+EIFAFG Sbjct: 1 MTNEYFELPKDEFKGNWLTCSYGFGFCPKTKHYKVVRNFTVEDRNSTVHNNYKSEIFAFG 60
Query: 61 TRPEWTRIESPTYSFNGCHGVYSNGGLHWIGQNNLGRDVIYRLNMEDEKYVQIPFPNDDG 120 TR EWTRIESP+ SFNGCHGVY NGGLHW+GQ++L +DVIY +NMEDEKY IPFPN+DG Sbjct: 61 TRQEWTRIESPSCSFNGCHGVYLNGGLHWVGQDDLHQDVIYGINMEDEKYKHIPFPNNDG 120
Query: 121 YFPCIAIFNGAIHLTLSMEEYEYRVWKMKEDGSWIKAFSVIAPDINKNILSFSKSTVEQI 180 YFPCI +FNGA+HLTLSME +EY +WKMKEDGSWIKAFS PD++KNILSFS+STVEQI Sbjct: 121 YFPCIGVFNGALHLTLSMEGHEYTMWKMKEDGSWIKAFSASIPDVSKNILSFSQSTVEQI 180
Query: 181 KICKDGRILCLWAGVELVLYNPTTKKMEKLIDDT 214 KICKDG+ILC+WAG ELVLY+P T+KMEKL+DDT Sbjct: 181 KICKDGKILCVWAGAELVLYDPKTEKMEKLMDDT 214
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1HDZ2 | 3.5e-115 | 90.19 | F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462000 PE=4 ... | [more] |
A0A6J1F4F5 | 6.2e-112 | 88.32 | F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111440549 PE=4 ... | [more] |
A0A6J1HBS1 | 9.0e-103 | 80.93 | F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462004 PE=4 ... | [more] |
A0A6J1HBS8 | 2.0e-102 | 80.28 | F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462010 PE=4 ... | [more] |
A0A6J1HDZ8 | 3.4e-102 | 79.91 | F-box protein CPR30-like OS=Cucurbita moschata OX=3662 GN=LOC111462005 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR017451 | F-box associated interaction domain | TIGRFAM | TIGR01640 | TIGR01640 | coord: 6..166 e-value: 5.5E-15 score: 53.3 |
None | No IPR available | PANTHER | PTHR47993 | OS09G0372900 PROTEIN-RELATED | coord: 1..172 |
None | No IPR available | PANTHER | PTHR47993:SF20 | F-BOX FAMILY PROTEIN | coord: 1..172 |
IPR011044 | Quinoprotein amine dehydrogenase, beta chain-like | SUPERFAMILY | 50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | coord: 63..210 |
Relationships
The following mRNA feature(s) are a part of this gene:
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