CmoCh10G011860 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh10G011860
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionF-box protein At3g07870-like
LocationCmo_Chr10: 10774855 .. 10775560 (+)
RNA-Seq ExpressionCmoCh10G011860
SyntenyCmoCh10G011860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGAATGAGTACTTCGAACTCCCCAAAGATGAATTCAAAGGGAATTGTTTTACTTGCTTCTATGGATTTGGATTTTGTCCGAAAACAAAGCAATACAAAGTAGTAAGAAGCTTTACTGTTCGTGATAGAAACTCTATCGTCCATAACTACAAAACAGAGATTTTTGCCTTTGGGACCCGGCCGGAATGGACGCGTATTGAGTCACCGACTTATTCTTTTAATGGATGTCATGGTGTTTACTCAAACGGAGGGCTGCATTGGATTGGACAAAATAATCTTGGTCGGGATGTTATTTATCGTCTAAATATGGAAGATGAGAAATACGTGCAGATTCCTTTTCCTAATGATGACGGTTATTTTCCTTGTATTGCAATATTTAACGGTGCAATTCATTTAACTCTTTCTATGGAGGAGTACGAGTATAGAGTGTGGAAGATGAAAGAAGATGGTTCGTGGATTAAAGCATTTAGTGTCATCGCACCAGATATCAATAAAAATATACTTTCCTTCTCAAAATCGACCGTGGAACAGATTAAAATATGTAAAGATGGAAGGATCCTGTGTCTTTGGGCTGGAGTTGAATTAGTATTGTATAATCCGACGACCAAGAAGATGGAGAAGTTAATAGATGATACAACTGTGAGAGATTTTTCAGTTCACAGCATTGATTGTTTTAATTTTAATGCTCTTCCAGATATGTTAA

mRNA sequence

ATGACGAATGAGTACTTCGAACTCCCCAAAGATGAATTCAAAGGGAATTGTTTTACTTGCTTCTATGGATTTGGATTTTGTCCGAAAACAAAGCAATACAAAGTAGTAAGAAGCTTTACTGTTCGTGATAGAAACTCTATCGTCCATAACTACAAAACAGAGATTTTTGCCTTTGGGACCCGGCCGGAATGGACGCGTATTGAGTCACCGACTTATTCTTTTAATGGATGTCATGGTGTTTACTCAAACGGAGGGCTGCATTGGATTGGACAAAATAATCTTGGTCGGGATGTTATTTATCGTCTAAATATGGAAGATGAGAAATACGTGCAGATTCCTTTTCCTAATGATGACGGTTATTTTCCTTGTATTGCAATATTTAACGGTGCAATTCATTTAACTCTTTCTATGGAGGAGTACGAGTATAGAGTGTGGAAGATGAAAGAAGATGGTTCGTGGATTAAAGCATTTAGTGTCATCGCACCAGATATCAATAAAAATATACTTTCCTTCTCAAAATCGACCGTGGAACAGATTAAAATATGTAAAGATGGAAGGATCCTGTGTCTTTGGGCTGGAGTTGAATTAGTATTGTATAATCCGACGACCAAGAAGATGGAGAAGTTAATAGATGATACAACTATATGTTAA

Coding sequence (CDS)

ATGACGAATGAGTACTTCGAACTCCCCAAAGATGAATTCAAAGGGAATTGTTTTACTTGCTTCTATGGATTTGGATTTTGTCCGAAAACAAAGCAATACAAAGTAGTAAGAAGCTTTACTGTTCGTGATAGAAACTCTATCGTCCATAACTACAAAACAGAGATTTTTGCCTTTGGGACCCGGCCGGAATGGACGCGTATTGAGTCACCGACTTATTCTTTTAATGGATGTCATGGTGTTTACTCAAACGGAGGGCTGCATTGGATTGGACAAAATAATCTTGGTCGGGATGTTATTTATCGTCTAAATATGGAAGATGAGAAATACGTGCAGATTCCTTTTCCTAATGATGACGGTTATTTTCCTTGTATTGCAATATTTAACGGTGCAATTCATTTAACTCTTTCTATGGAGGAGTACGAGTATAGAGTGTGGAAGATGAAAGAAGATGGTTCGTGGATTAAAGCATTTAGTGTCATCGCACCAGATATCAATAAAAATATACTTTCCTTCTCAAAATCGACCGTGGAACAGATTAAAATATGTAAAGATGGAAGGATCCTGTGTCTTTGGGCTGGAGTTGAATTAGTATTGTATAATCCGACGACCAAGAAGATGGAGAAGTTAATAGATGATACAACTATATGTTAA

Protein sequence

MTNEYFELPKDEFKGNCFTCFYGFGFCPKTKQYKVVRSFTVRDRNSIVHNYKTEIFAFGTRPEWTRIESPTYSFNGCHGVYSNGGLHWIGQNNLGRDVIYRLNMEDEKYVQIPFPNDDGYFPCIAIFNGAIHLTLSMEEYEYRVWKMKEDGSWIKAFSVIAPDINKNILSFSKSTVEQIKICKDGRILCLWAGVELVLYNPTTKKMEKLIDDTTIC
Homology
BLAST of CmoCh10G011860 vs. ExPASy TrEMBL
Match: A0A6J1HDZ2 (F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462000 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 3.5e-115
Identity = 193/214 (90.19%), Postives = 202/214 (94.39%), Query Frame = 0

Query: 1   MTNEYFELPKDEFKGNCFTCFYGFGFCPKTKQYKVVRSFTVRDRNSIVHNYKTEIFAFGT 60
           +TNEYFELPKD+FKGN FTC+YGFGFCPKTKQYKVVRS TVRDRNSI+HNYKTEIFAFGT
Sbjct: 143 ITNEYFELPKDKFKGNWFTCYYGFGFCPKTKQYKVVRSSTVRDRNSIIHNYKTEIFAFGT 202

Query: 61  RPEWTRIESPTYSFNGCHGVYSNGGLHWIGQNNLGRDVIYRLNMEDEKYVQIPFPNDDGY 120
           RPEWTRIESPT SFNGCHGVY NGGLHWIGQNNLG DVIYRLNMEDEKY QIPFP+DDGY
Sbjct: 203 RPEWTRIESPTCSFNGCHGVYLNGGLHWIGQNNLGPDVIYRLNMEDEKYEQIPFPDDDGY 262

Query: 121 FPCIAIFNGAIHLTLSMEEYEYRVWKMKEDGSWIKAFSVIAPDINKNILSFSKSTVEQIK 180
           FPCI IFNGAIHLTLSME Y+YRVWKMKEDG WIKAFSVI PD+NKNILSFSKSTVE IK
Sbjct: 263 FPCIGIFNGAIHLTLSMEGYKYRVWKMKEDGLWIKAFSVIIPDVNKNILSFSKSTVEPIK 322

Query: 181 ICKDGRILCLWAGVELVLYNPTTKKMEKLIDDTT 215
           ICKDG+ILCLWAG EL+LYNPTTKKMEKLIDDTT
Sbjct: 323 ICKDGKILCLWAGAELMLYNPTTKKMEKLIDDTT 356

BLAST of CmoCh10G011860 vs. ExPASy TrEMBL
Match: A0A6J1F4F5 (F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111440549 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 6.2e-112
Identity = 189/214 (88.32%), Postives = 200/214 (93.46%), Query Frame = 0

Query: 1   MTNEYFELPKDEFKGNCFTCFYGFGFCPKTKQYKVVRSFTVRDRNSIVHNYKTEIFAFGT 60
           +TNEYFELPKD++KGN FTC YGFGFCPKTKQYKVVRS TVRDRNSI+HNYKTEIFAFGT
Sbjct: 146 ITNEYFELPKDKYKGNWFTCCYGFGFCPKTKQYKVVRSSTVRDRNSIIHNYKTEIFAFGT 205

Query: 61  RPEWTRIESPTYSFNGCHGVYSNGGLHWIGQNNLGRDVIYRLNMEDEKYVQIPFPNDDGY 120
           RPEWT+IESPT SFNGCHGVY NGGLHWIGQNNLG DVIYRLNMEDEKY QIPFP+DDGY
Sbjct: 206 RPEWTQIESPTCSFNGCHGVYLNGGLHWIGQNNLGPDVIYRLNMEDEKYEQIPFPSDDGY 265

Query: 121 FPCIAIFNGAIHLTLSMEEYEYRVWKMKEDGSWIKAFSVIAPDINKNILSFSKSTVEQIK 180
           FPCI IFNGAI+LTLS+E Y+YRVWKMKEDG WIKAFSVI P +NKNILSFSKSTVE IK
Sbjct: 266 FPCIGIFNGAINLTLSVEGYKYRVWKMKEDGLWIKAFSVIVPYVNKNILSFSKSTVEPIK 325

Query: 181 ICKDGRILCLWAGVELVLYNPTTKKMEKLIDDTT 215
           ICKDG+ILCLWAG ELVLYNPTTKKMEKLIDDTT
Sbjct: 326 ICKDGKILCLWAGAELVLYNPTTKKMEKLIDDTT 359

BLAST of CmoCh10G011860 vs. ExPASy TrEMBL
Match: A0A6J1HBS1 (F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462004 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 9.0e-103
Identity = 174/215 (80.93%), Postives = 193/215 (89.77%), Query Frame = 0

Query: 1   MTNEYFELPKDEFKGNCFTCFYGFGFCPKTKQYKVVRSFTVRDRNSIVHNYKTEIFAFGT 60
           MTNEYFE+PKDEFKGN  TC YGFGFCPKTK YKV+R+ TV DRNSIVHNYK+EIFAFGT
Sbjct: 143 MTNEYFEVPKDEFKGNWLTCSYGFGFCPKTKHYKVIRNSTVDDRNSIVHNYKSEIFAFGT 202

Query: 61  RPEWTRIESPTYSFNGCHGVYSNGGLHWIGQNNLGRDVIYRLNMEDEKYVQIPFPNDDGY 120
           R EWTRIESP+ SF+GCHGVY NGGLHW+GQN+L RDVIYRLNMEDEKY QIPFPNDDGY
Sbjct: 203 RQEWTRIESPSCSFHGCHGVYLNGGLHWVGQNDLRRDVIYRLNMEDEKYEQIPFPNDDGY 262

Query: 121 FPCIAIFNGAIHLTLSMEEYEYRVWKMKEDGSWIKAFSVIAPDINKNILSFSKSTVEQIK 180
           FP I +FNGA+HLTLSMEEYEYR+WKMKEDGSWIK+FSVI P   KN+LSFSKSTVEQIK
Sbjct: 263 FPYIRVFNGALHLTLSMEEYEYRIWKMKEDGSWIKSFSVIIP--TKNVLSFSKSTVEQIK 322

Query: 181 ICKDGRILCLWAGVELVLYNPTTKKMEKLIDDTTI 216
             KDG+ILCLWAG +LVLY+P T+KMEKL+DDT +
Sbjct: 323 TGKDGKILCLWAGAQLVLYDPKTEKMEKLMDDTIV 355

BLAST of CmoCh10G011860 vs. ExPASy TrEMBL
Match: A0A6J1HBS8 (F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462010 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 2.0e-102
Identity = 171/213 (80.28%), Postives = 190/213 (89.20%), Query Frame = 0

Query: 1   MTNEYFELPKDEFKGNCFTCFYGFGFCPKTKQYKVVRSFTVRDRNSIVHNYKTEIFAFGT 60
           MTNEYFELPKDEFKGN  TC YGFGFCPKTK YKVVR+ TV DRNS V NYK+EIFAFGT
Sbjct: 143 MTNEYFELPKDEFKGNWLTCSYGFGFCPKTKHYKVVRNSTVEDRNSTV-NYKSEIFAFGT 202

Query: 61  RPEWTRIESPTYSFNGCHGVYSNGGLHWIGQNNLGRDVIYRLNMEDEKYVQIPFPNDDGY 120
           R EWTRIESP+YSFNGCHGVY NGGLHW+GQ++L  DVIYRLNMEDEKY  IPFPNDDGY
Sbjct: 203 RQEWTRIESPSYSFNGCHGVYLNGGLHWVGQDDLHHDVIYRLNMEDEKYEHIPFPNDDGY 262

Query: 121 FPCIAIFNGAIHLTLSMEEYEYRVWKMKEDGSWIKAFSVIAPDINKNILSFSKSTVEQIK 180
           FPCI +FNGA+HLTLSME +EY +WKMKEDGSWIKAFS   PD+ KNILSFS+ST+EQ+K
Sbjct: 263 FPCIGVFNGALHLTLSMEGHEYTMWKMKEDGSWIKAFSTSVPDVGKNILSFSQSTLEQVK 322

Query: 181 ICKDGRILCLWAGVELVLYNPTTKKMEKLIDDT 214
           ICKDG+ILC+WAG ELVLY+P T+KMEKL+DDT
Sbjct: 323 ICKDGKILCVWAGAELVLYDPKTEKMEKLMDDT 354

BLAST of CmoCh10G011860 vs. ExPASy TrEMBL
Match: A0A6J1HDZ8 (F-box protein CPR30-like OS=Cucurbita moschata OX=3662 GN=LOC111462005 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 3.4e-102
Identity = 171/214 (79.91%), Postives = 192/214 (89.72%), Query Frame = 0

Query: 1   MTNEYFELPKDEFKGNCFTCFYGFGFCPKTKQYKVVRSFTVRDRNSIVH-NYKTEIFAFG 60
           MTNEYFELPKDEFKGN  TC YGFGFCPKTK YKVVR+FTV DRNS VH NYK+EIFAFG
Sbjct: 1   MTNEYFELPKDEFKGNWLTCSYGFGFCPKTKHYKVVRNFTVEDRNSTVHNNYKSEIFAFG 60

Query: 61  TRPEWTRIESPTYSFNGCHGVYSNGGLHWIGQNNLGRDVIYRLNMEDEKYVQIPFPNDDG 120
           TR EWTRIESP+ SFNGCHGVY NGGLHW+GQ++L +DVIY +NMEDEKY  IPFPN+DG
Sbjct: 61  TRQEWTRIESPSCSFNGCHGVYLNGGLHWVGQDDLHQDVIYGINMEDEKYKHIPFPNNDG 120

Query: 121 YFPCIAIFNGAIHLTLSMEEYEYRVWKMKEDGSWIKAFSVIAPDINKNILSFSKSTVEQI 180
           YFPCI +FNGA+HLTLSME +EY +WKMKEDGSWIKAFS   PD++KNILSFS+STVEQI
Sbjct: 121 YFPCIGVFNGALHLTLSMEGHEYTMWKMKEDGSWIKAFSASIPDVSKNILSFSQSTVEQI 180

Query: 181 KICKDGRILCLWAGVELVLYNPTTKKMEKLIDDT 214
           KICKDG+ILC+WAG ELVLY+P T+KMEKL+DDT
Sbjct: 181 KICKDGKILCVWAGAELVLYDPKTEKMEKLMDDT 214

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1HDZ23.5e-11590.19F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462000 PE=4 ... [more]
A0A6J1F4F56.2e-11288.32F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111440549 PE=4 ... [more]
A0A6J1HBS19.0e-10380.93F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462004 PE=4 ... [more]
A0A6J1HBS82.0e-10280.28F-box protein At3g07870-like OS=Cucurbita moschata OX=3662 GN=LOC111462010 PE=4 ... [more]
A0A6J1HDZ83.4e-10279.91F-box protein CPR30-like OS=Cucurbita moschata OX=3662 GN=LOC111462005 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017451F-box associated interaction domainTIGRFAMTIGR01640TIGR01640coord: 6..166
e-value: 5.5E-15
score: 53.3
NoneNo IPR availablePANTHERPTHR47993OS09G0372900 PROTEIN-RELATEDcoord: 1..172
NoneNo IPR availablePANTHERPTHR47993:SF20F-BOX FAMILY PROTEINcoord: 1..172
IPR011044Quinoprotein amine dehydrogenase, beta chain-likeSUPERFAMILY50969YVTN repeat-like/Quinoprotein amine dehydrogenasecoord: 63..210

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh10G011860.1CmoCh10G011860.1mRNA