CmoCh10G000480 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh10G000480
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Protein of unknown function (DUF 3339)
Location	Cmo_Chr10: 228881 .. 229373 (-)
RNA-Seq Expression	CmoCh10G000480
Synteny	CmoCh10G000480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCTGTGCTGGAAAGTTGAATGTAACTGTAAGCCGCGTTAGTTCAATAAAGTTTTCATCTCACGATGCCTGAAAAATTAAATTAAGGAAAACCCAAAAATGGCACCGCCTCATCCGTCCACGTGAAGCATCAAGATCGATGCAGTTGTCGAATCACTGTCCCGCTTCCAAGTTATTGCCTCGCCTTCTCATATCTTCCATCCTCCCAGCCCCATCCCCATCGCCGAAACTCACAACTTTTTCTGTGGTTCTGCAGGCGTAAACTTGAACACACATCCCATCCAATGGCAGATTGGGGGCCGGTGATTATAGCGGTGGTGCTGTTCGTGCTCCTCAGTCCGGGGCTGCTGTTTCAGATCCCAGCCAGAGGAAGGGTGGTTGAGTTTGGGAACATGCAGACAAGCGGGGCTTCCATTTTAGTCCACGCCATCATCTACTTCGGCCTCATCACCATCTTCCTCGTCGCCATCGGCGTCCACATCTACACTGGCTAA

mRNA sequence

GTCTGTGCTGGAAAGTTGAATGTAACTGTAAGCCGCGTTAGTTCAATAAAGTTTTCATCTCACGATGCCTGAAAAATTAAATTAAGGAAAACCCAAAAATGGCACCGCCTCATCCGTCCACGTGAAGCATCAAGATCGATGCAGTTGTCGAATCACTGTCCCGCTTCCAAGCGTAAACTTGAACACACATCCCATCCAATGGCAGATTGGGGGCCGGTGATTATAGCGGTGGTGCTGTTCGTGCTCCTCAGTCCGGGGCTGCTGTTTCAGATCCCAGCCAGAGGAAGGGTGGTTGAGTTTGGGAACATGCAGACAAGCGGGGCTTCCATTTTAGTCCACGCCATCATCTACTTCGGCCTCATCACCATCTTCCTCGTCGCCATCGGCGTCCACATCTACACTGGCTAA

Coding sequence (CDS)

ATGCAGTTGTCGAATCACTGTCCCGCTTCCAAGCGTAAACTTGAACACACATCCCATCCAATGGCAGATTGGGGGCCGGTGATTATAGCGGTGGTGCTGTTCGTGCTCCTCAGTCCGGGGCTGCTGTTTCAGATCCCAGCCAGAGGAAGGGTGGTTGAGTTTGGGAACATGCAGACAAGCGGGGCTTCCATTTTAGTCCACGCCATCATCTACTTCGGCCTCATCACCATCTTCCTCGTCGCCATCGGCGTCCACATCTACACTGGCTAA

Protein sequence

MQLSNHCPASKRKLEHTSHPMADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVAIGVHIYTG

Homology

[Close]

BLAST of CmoCh10G000480 vs. ExPASy TrEMBL
Match: A0A6J1E5M1 (uncharacterized protein LOC111429708 OS=Cucurbita moschata OX=3662 GN=LOC111429708 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.4e-33
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 13  KLEHTSHPMADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYF 72
           KLEHTSHPMADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYF
Sbjct: 68  KLEHTSHPMADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYF 127

Query: 73  GLITIFLVAIGVHIYTG 90
           GLITIFLVAIGVHIYTG
Sbjct: 128 GLITIFLVAIGVHIYTG 144

[Close]

BLAST of CmoCh10G000480 vs. ExPASy TrEMBL
Match: A0A6J1JDA3 (uncharacterized protein LOC111484778 OS=Cucurbita maxima OX=3661 GN=LOC111484778 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.1e-28
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 21 MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 80
          MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 60

Query: 81 AIGVHIYTG 90
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of CmoCh10G000480 vs. ExPASy TrEMBL
Match: A0A0B2QV82 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_012875 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.7e-28
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 7   CPASKRKLEHTSHPMADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILV 66
           CP    KL  ++  MADWGPV+IAVVLFVLLSPGLLFQ+PARGRV EFGNMQTSGASILV
Sbjct: 22  CPPEALKL-FSALKMADWGPVVIAVVLFVLLSPGLLFQMPARGRVAEFGNMQTSGASILV 81

Query: 67  HAIIYFGLITIFLVAIGVHIYTG 90
           HAIIYFGLITIFL+AIGVHIYTG
Sbjct: 82  HAIIYFGLITIFLIAIGVHIYTG 103

[Close]

BLAST of CmoCh10G000480 vs. ExPASy TrEMBL
Match: I1K6N1 (Uncharacterized protein OS=Glycine max OX=3847 GN=100805083 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.7e-28
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 7   CPASKRKLEHTSHPMADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILV 66
           CP    KL  ++  MADWGPV+IAVVLFVLLSPGLLFQ+PARGRV EFGNMQTSGASILV
Sbjct: 22  CPPEALKL-FSALKMADWGPVVIAVVLFVLLSPGLLFQMPARGRVAEFGNMQTSGASILV 81

Query: 67  HAIIYFGLITIFLVAIGVHIYTG 90
           HAIIYFGLITIFL+AIGVHIYTG
Sbjct: 82  HAIIYFGLITIFLIAIGVHIYTG 103

[Close]

BLAST of CmoCh10G000480 vs. ExPASy TrEMBL
Match: A0A5A7URK5 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00460 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.5e-27
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 21 MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 80
          MADWGPVIIAVVLFVLLSPGLLFQIPA+GRVVEFGNMQTSGASILVHAIIYFGLITIFL+
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60

Query: 81 AIGVHIYTG 90
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of CmoCh10G000480 vs. NCBI nr
Match: XP_022921425.1 (uncharacterized protein LOC111429708 [Cucurbita moschata])

HSP 1 Score: 151.8 bits (382), Expect = 2.9e-33
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 13  KLEHTSHPMADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYF 72
           KLEHTSHPMADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYF
Sbjct: 68  KLEHTSHPMADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYF 127

Query: 73  GLITIFLVAIGVHIYTG 90
           GLITIFLVAIGVHIYTG
Sbjct: 128 GLITIFLVAIGVHIYTG 144

[Close]

BLAST of CmoCh10G000480 vs. NCBI nr
Match: XP_022987136.1 (uncharacterized protein LOC111484778 [Cucurbita maxima])

HSP 1 Score: 133.3 bits (334), Expect = 1.1e-27
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 21 MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 80
          MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 60

Query: 81 AIGVHIYTG 90
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of CmoCh10G000480 vs. NCBI nr
Match: XP_023515465.1 (uncharacterized protein LOC111779615 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.9 bits (333), Expect = 1.4e-27
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 21 MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 80
          MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 60

Query: 81 AIGVHIYTG 90
          AIGVH+YTG
Sbjct: 61 AIGVHVYTG 69

[Close]

BLAST of CmoCh10G000480 vs. NCBI nr
Match: XP_003525413.1 (uncharacterized protein LOC100805083 [Glycine max] >XP_028233492.1 uncharacterized protein LOC114413346 [Glycine soja] >KAG5029929.1 hypothetical protein JHK87_013443 [Glycine soja] >KHN23673.1 hypothetical protein glysoja_039124 [Glycine soja] >KRH59821.1 hypothetical protein GLYMA_05G204400v4 [Glycine max] >RZC13450.1 hypothetical protein D0Y65_012875 [Glycine soja])

HSP 1 Score: 132.9 bits (333), Expect = 1.4e-27
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 7   CPASKRKLEHTSHPMADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILV 66
           CP    KL  ++  MADWGPV+IAVVLFVLLSPGLLFQ+PARGRV EFGNMQTSGASILV
Sbjct: 22  CPPEALKL-FSALKMADWGPVVIAVVLFVLLSPGLLFQMPARGRVAEFGNMQTSGASILV 81

Query: 67  HAIIYFGLITIFLVAIGVHIYTG 90
           HAIIYFGLITIFL+AIGVHIYTG
Sbjct: 82  HAIIYFGLITIFLIAIGVHIYTG 103

[Close]

BLAST of CmoCh10G000480 vs. NCBI nr
Match: KAG5058542.1 (hypothetical protein JHK86_013538 [Glycine max])

HSP 1 Score: 132.9 bits (333), Expect = 1.4e-27
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 7   CPASKRKLEHTSHPMADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILV 66
           CP    KL  ++  MADWGPV+IAVVLFVLLSPGLLFQ+PARGRV EFGNMQTSGASILV
Sbjct: 25  CPPEALKL-FSALKMADWGPVVIAVVLFVLLSPGLLFQMPARGRVAEFGNMQTSGASILV 84

Query: 67  HAIIYFGLITIFLVAIGVHIYTG 90
           HAIIYFGLITIFL+AIGVHIYTG
Sbjct: 85  HAIIYFGLITIFLIAIGVHIYTG 106

[Close]

BLAST of CmoCh10G000480 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 121.3 bits (303), Expect = 3.9e-28
Identity = 59/69 (85.51%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 21 MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 80
          MADWGPV++AV+LFVLL+PGLLFQIPARGRVVEFGNMQTSGASILVH II+FGLITIF +
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 81 AIGVHIYTG 90
          AI +HIYTG
Sbjct: 61 AIRLHIYTG 69

[Close]

BLAST of CmoCh10G000480 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 120.6 bits (301), Expect = 6.6e-28
Identity = 60/69 (86.96%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 21 MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 80
          MADWGPV+IAV+LFV+LSPGLLFQIPA GRVVEFGNMQTSGASILVHAII+FGLITIF +
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 81 AIGVHIYTG 90
          AI VHIY+G
Sbjct: 61 AINVHIYSG 69

[Close]

BLAST of CmoCh10G000480 vs. TAIR 10
Match: AT5G40980.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 101.7 bits (252), Expect = 3.2e-22
Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 22 ADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVA 81
          ADWGPVI+AV LF+LLSPGLLFQ+PAR RV+EFGNM TSG SILVHAIIYF ++TI ++A
Sbjct: 3  ADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILIIA 62

Query: 82 IGVHIY 88
          I +HI+
Sbjct: 63 IQIHIH 68

[Close]

BLAST of CmoCh10G000480 vs. TAIR 10
Match: AT3G27027.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 97.1 bits (240), Expect = 7.8e-21
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 23 DWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVAI 82
          DWGPVI+AV LF+LLSPGLLFQ+PAR RVVEFGNM TSG +ILVHA IYF ++TI ++AI
Sbjct: 4  DWGPVIVAVSLFILLSPGLLFQLPARTRVVEFGNMTTSGIAILVHAFIYFCILTILVIAI 63

Query: 83 GVHIY 88
           +HI+
Sbjct: 64 QIHIH 68

[Close]

BLAST of CmoCh10G000480 vs. TAIR 10
Match: AT3G01940.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-20
Identity = 47/66 (71.21%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 22 ADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLVA 81
          ADWGPV +AVVLFV+LSPGLLFQ+PAR RV+E GNM TSG SILVHAI++F +ITI ++A
Sbjct: 4  ADWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIA 63

Query: 82 IGVHIY 88
          I +HI+
Sbjct: 64 IQIHIH 69

The following BLAST results are available for this feature:

BLAST of CmoCh10G000480 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh10G000480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E5M1	1.4e-33	100.00	uncharacterized protein LOC111429708 OS=Cucurbita moschata OX=3662 GN=LOC1114297...	[more]
A0A6J1JDA3	5.1e-28	100.00	uncharacterized protein LOC111484778 OS=Cucurbita maxima OX=3661 GN=LOC111484778...	[more]
A0A0B2QV82	6.7e-28	83.13	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_012875 PE=4 SV=1	[more]
I1K6N1	6.7e-28	83.13	Uncharacterized protein OS=Glycine max OX=3847 GN=100805083 PE=4 SV=1	[more]
A0A5A7URK5	1.5e-27	97.10	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of CmoCh10G000480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921425.1	2.9e-33	100.00	uncharacterized protein LOC111429708 [Cucurbita moschata]	[more]
XP_022987136.1	1.1e-27	100.00	uncharacterized protein LOC111484778 [Cucurbita maxima]	[more]
XP_023515465.1	1.4e-27	98.55	uncharacterized protein LOC111779615 [Cucurbita pepo subsp. pepo]	[more]
XP_003525413.1	1.4e-27	83.13	uncharacterized protein LOC100805083 [Glycine max] >XP_028233492.1 uncharacteriz...	[more]
KAG5058542.1	1.4e-27	83.13	hypothetical protein JHK86_013538 [Glycine max]	[more]

BLAST of CmoCh10G000480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48660.1	3.9e-28	85.51	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	6.6e-28	86.96	Protein of unknown function (DUF 3339)	[more]
AT5G40980.1	3.2e-22	74.24	Protein of unknown function (DUF 3339)	[more]
AT3G27027.1	7.8e-21	72.31	Protein of unknown function (DUF 3339)	[more]
AT3G01940.1	1.3e-20	71.21	Protein of unknown function (DUF 3339)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 21..87 e-value: 1.0E-36 score: 124.9
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 21..89
None	No IPR available	PANTHER	PTHR33128:SF73	BNAA06G16390D PROTEIN	coord: 21..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G000480.1	CmoCh10G000480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane