CmoCh08G005680 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TACGTAGGCAACCGGTCCCGTGTCGGTGGCCTCGATTTCAGATATAAAATCGACGGCCGATTTGGTTCTCTATAATTGGCGCTTCCCGTTTTCAATTTGTTTCCCTTCAACCTTATTTCATCTTCCATTTCGTTGCTCTGTTTCTCTCTCTCTCTCTCGCTCTGCAATCTCTCTAGCCAAGAGCACTGGAAGAACCGGGAGTGAAAGGAGAGGGGCAGTTCTGGCCGGACTAAGTACCATAGCCGTTCGACTCGGCGGCTGTGGAGGCGGATTTTGGTACCGGAGGAAAAAGAAGAGGCGGAGCCAGAGCAGGACCAAAGTTAAGCTTCGGTTTATGGAGCTTTGGCATAAGATGGTTTTCCCTGTCCGACGAGTTTGGCTCGCTGTTTCCGCTCGAGTTAGGGCTCGGAAGAACGGTTAGTTTGTTAATACTCTTCTTCTTTCGCTTTCGATTTTAATTTTTCTCGAATCGGAGTTTGATTATGGCTTAATTTGATCTAATGTGATGATCTCGACTGCTTGATTTGCTTCCGATTGATGGAATTGCTGAATTTCTGTTTCTCTATGGTTTCTGATTTTTCTTCTTCCACTTATTGTTTCGATACTGCCATTTGGATTTGAAAACTGCATAGGAATTTGTTTGAATCATCATTTACAGTTAAAATTCCTGCATAATATTATGGTATGCGATTAAAAGGGGAAAAAATCTCGTTCTCGATTAATGGTAAAATAAATTTGAAAAAGACGAAAGGAGCCACCAAGTGAACCGAAAGGTGAAATACGGTTCATAGTACTAATTTCTTAATCTTCTCCTCTTTCTTTATTAGCTTTATCGCTTTAAATAGGTTATATGTTATGCCTTGATCTGTATGCAATGGTTATTAGCCACTTAATCTCCACCACTATGATAGCGAGAGAGAGATAAAGAGAGTTGATGTTATAAGGCAATTGTAAATGGCCATGTGATTATTCAACCTATCCAGTACAATAATTTGGTAGGAAAAATCACAAGGAACGTTCCATAGACATTGGCCCATCTATTCTTACTTTTTGAAAGTGACTCTACATGTATCTATTAGGTAATAACTTAAAAGCGCAACGTTAATAGATATTGTCCGTTTTAACTCGTTACGGGTCGCTACCAGCTTTACAGTTTTAAAACGTGTTTGGCTGATTACGATACGTTTCGGGCCAAAGTGGATAATATTTGCTAGCGGTGGGCTTGAACTGTTACAAATGGTATTAGAGTCAAGCGCCGAGTAGTGTGCTAGTGAGGATGTTGGCCCCCAAGGGAGGTGGATTGTAAGATCTCACATTGGTTGGAGAGGAGAACAAAATATTTATTGTAAAGAATATGGAAACCTCTCCCGCGTTTTGAATCCACAGACCAAAAGACAATATCTACGGGCTGTGGGCTTGAACTTACCCTATATTGCTAAAAATATCACCAAAAGTGATTTTGAATATGAAATCCCTTTAATTTTAGGAATTTTAGTTTATGAGCGGAGATGTTTCTATCTTTAAACCACACTTTCATTCTAGGGAATTCAATTTCTAGACCGATGTCTTGTTTTATACTCAAACTACTCGTTTTAATTTTCTTATTAACAATGAGATTCAAATCTCTGATCTCTCGCGGAATTGATAATTTTATTTTTGAATGTGTATTATATTTTTGGGGACACTTCCCCATTTAATAATGCACAAATAGGTCCCCACTTGCAGCAATGCAGTTGAAGACAGAGCGAAAGATTAAAGGCACCTTTATGCTTAAAGTTTTTTTTCTTATAACAGTTTTGATTGTCTTGTTGTGATTCTTAACAGTCATCTGTCCCACTTGAGACTAACGACGGTCTCCAAATGCGCATTAGTTTTCAACTAGTGGCCTCCCATTTTGATTTGGTTTTGTCCTCTATTACTATTCTAACCATAACTCCAACAGGCCTGCCTGTCTCTACTCTTTTTAGTATTGTCCAAGTCGCACCACAAATTTCCTCTACCCTCTTAACATATATATATATATATATATATATATATATGTATAGAGAGAGAGAGAGAGAGAGAGATGAGGTGGGGTGGAGTTAGGTCAGTCCTGTCCCTTTAAAAGGAGTGGGCTCAAATTAGGCCCATTCAAGTCTGAATTGGTTGTTGGGTGGCCCCATCCCTCAAGGAATCTTTCATAATATGAACTGAACCAATCTTTCATCCATAAGATTGCTCTGTAGAAATCTAAGCTAAGCTAAGCAATGATGTGAACTTTTGTGCTAACAGGAGGTGGGCTTTTGAAGAAGCTCCATGATGATGTAGAAACCTGTGGATATGAAGATGTGAAGGTGATGTGGGAAATGTTGCGTCGATCGGAGTCGGAGCTGCTCGGTCAACCAAAACGCAAGCAGCGCCTATTCTGGAGAGTTTCTGTGTGGTCCAACCATGCTGCTGCTGCTGCTGCTGCACCCTCCTGTTACTCTGCAACTCATGCTTCATGAGCCCATCAAATCAACAACTCTACTCTCACTTCAGCTCAGCTCAGCTTAACAGCCAATGCTCGCAATGGCACAGAACTCTTTACCAAACTTGTTCAAAGAAATGTGAAGTCTTTGCACACGCAGTTAATCTCTTCCACTTTGAGCAGAAAAAACACCCTTTTGTAAGTATTAATAATTTTTTTTGGTTTGTAGCTAAGAATCGTTTGTGAATCATCGATGATGCTGGATTGGATGCATCTCCATGAAAATCAATCGAAAACCAATCATAAATTCAACCTTAATTGAACTTTATAATGTTAAATTTTTCGATGTTTTTCAATACGTGGAGGAGATCCAAACATCCTATCGATTTCTTTCTTAAAATGTTTTGAAGTTATTATCATACTTTAAGCATTATTGCTACTTTTGTGGTATTATTGTAAGGTTTGATGTAACATAAGATTGATACTAAGACATTATTGACACAAAGCAGGAGACATGATTGGGA TACGTAGGCAACCGGTCCCGTGTCGGTGGCCTCGATTTCAGATATAAAATCGACGGCCGATTTGGTTCTCTATAATTGGCGCTTCCCGTTTTCAATTTGTTTCCCTTCAACCTTATTTCATCTTCCATTTCGTTGCTCTGTTTCTCTCTCTCTCTCTCGCTCTGCAATCTCTCTAGCCAAGAGCACTGGAAGAACCGGGAGTGAAAGGAGAGGGGCAGTTCTGGCCGGACTAAGTACCATAGCCGTTCGACTCGGCGGCTGTGGAGGCGGATTTTGGTACCGGAGGAAAAAGAAGAGGCGGAGCCAGAGCAGGACCAAAGTTAAGCTTCGGTTTATGGAGCTTTGGCATAAGATGGTTTTCCCTGTCCGACGAGTTTGGCTCGCTGTTTCCGCTCGAGTTAGGGCTCGGAAGAACGGAGGTGGGCTTTTGAAGAAGCTCCATGATGATGTAGAAACCTGTGGATATGAAGATGTGAAGGTGATGTGGGAAATGTTGCGTCGATCGGAGTCGGAGCTGCTCGGTCAACCAAAACGCAAGCAGCGCCTATTCTGGAGAGTTTCTGTGTGGTCCAACCATGCTGCTGCTGCTGCTGCTGCACCCTCCTGTTACTCTGCAACTCATGCTTCATGAGCCCATCAAATCAACAACTCTACTCTCACTTCAGCTCAGCTCAGCTTAACAGCCAATGCTCGCAATGGCACAGAACTCTTTACCAAACTTGTTCAAAGAAATGTGAAGTCTTTGCACACGCAGTTAATCTCTTCCACTTTGAGCAGAAAAAACACCCTTTTGTAAGTATTAATAATTTTTTTTGGTTTGTAGCTAAGAATCGTTTGTGAATCATCGATGATGCTGGATTGGATGCATCTCCATGAAAATCAATCGAAAACCAATCATAAATTCAACCTTAATTGAACTTTATAATGTTAAATTTTTCGATGTTTTTCAATACGTGGAGGAGATCCAAACATCCTATCGATTTCTTTCTTAAAATGTTTTGAAGTTATTATCATACTTTAAGCATTATTGCTACTTTTGTGGTATTATTGTAAGGTTTGATGTAACATAAGATTGATACTAAGACATTATTGACACAAAGCAGGAGACATGATTGGGA ATGGAGCTTTGGCATAAGATGGTTTTCCCTGTCCGACGAGTTTGGCTCGCTGTTTCCGCTCGAGTTAGGGCTCGGAAGAACGGAGGTGGGCTTTTGAAGAAGCTCCATGATGATGTAGAAACCTGTGGATATGAAGATGTGAAGGTGATGTGGGAAATGTTGCGTCGATCGGAGTCGGAGCTGCTCGGTCAACCAAAACGCAAGCAGCGCCTATTCTGGAGAGTTTCTGTGTGGTCCAACCATGCTGCTGCTGCTGCTGCTGCACCCTCCTGTTACTCTGCAACTCATGCTTCATGA MELWHKMVFPVRRVWLAVSARVRARKNGGGLLKKLHDDVETCGYEDVKVMWEMLRRSESELLGQPKRKQRLFWRVSVWSNHAAAAAAAPSCYSATHAS Homology
BLAST of CmoCh08G005680 vs. ExPASy TrEMBL
Match: A0A5A7UWX2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001420 PE=4 SV=1) HSP 1 Score: 165.6 bits (418), Expect = 1.0e-37 Identity = 86/98 (87.76%), Postives = 90/98 (91.84%), Query Frame = 0
BLAST of CmoCh08G005680 vs. ExPASy TrEMBL
Match: A0A6J1CR01 (uncharacterized protein LOC111013423 OS=Momordica charantia OX=3673 GN=LOC111013423 PE=4 SV=1) HSP 1 Score: 164.9 bits (416), Expect = 1.7e-37 Identity = 85/98 (86.73%), Postives = 89/98 (90.82%), Query Frame = 0
BLAST of CmoCh08G005680 vs. ExPASy TrEMBL
Match: A0A0A0K8I7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G430780 PE=4 SV=1) HSP 1 Score: 161.8 bits (408), Expect = 1.5e-36 Identity = 84/98 (85.71%), Postives = 87/98 (88.78%), Query Frame = 0
BLAST of CmoCh08G005680 vs. ExPASy TrEMBL
Match: A0A1S4E346 (uncharacterized protein LOC107991796 OS=Cucumis melo OX=3656 GN=LOC107991796 PE=4 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 3.3e-36 Identity = 83/98 (84.69%), Postives = 87/98 (88.78%), Query Frame = 0
BLAST of CmoCh08G005680 vs. ExPASy TrEMBL
Match: A0A6J1JS76 (uncharacterized protein LOC111488437 OS=Cucurbita maxima OX=3661 GN=LOC111488437 PE=4 SV=1) HSP 1 Score: 157.1 bits (396), Expect = 3.6e-35 Identity = 81/98 (82.65%), Postives = 87/98 (88.78%), Query Frame = 0
BLAST of CmoCh08G005680 vs. NCBI nr
Match: KAG6593352.1 (hypothetical protein SDJN03_12828, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025697.1 hypothetical protein SDJN02_12195 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 191.8 bits (486), Expect = 2.8e-45 Identity = 94/98 (95.92%), Postives = 94/98 (95.92%), Query Frame = 0
BLAST of CmoCh08G005680 vs. NCBI nr
Match: KAA0058686.1 (uncharacterized protein E6C27_scaffold339G001560 [Cucumis melo var. makuwa] >TYK10492.1 uncharacterized protein E5676_scaffold459G001420 [Cucumis melo var. makuwa]) HSP 1 Score: 165.6 bits (418), Expect = 2.1e-37 Identity = 86/98 (87.76%), Postives = 90/98 (91.84%), Query Frame = 0
BLAST of CmoCh08G005680 vs. NCBI nr
Match: XP_022143553.1 (uncharacterized protein LOC111013423 [Momordica charantia]) HSP 1 Score: 164.9 bits (416), Expect = 3.6e-37 Identity = 85/98 (86.73%), Postives = 89/98 (90.82%), Query Frame = 0
BLAST of CmoCh08G005680 vs. NCBI nr
Match: XP_038900267.1 (uncharacterized protein LOC120087349 [Benincasa hispida]) HSP 1 Score: 164.5 bits (415), Expect = 4.7e-37 Identity = 85/98 (86.73%), Postives = 89/98 (90.82%), Query Frame = 0
BLAST of CmoCh08G005680 vs. NCBI nr
Match: KGN45194.1 (hypothetical protein Csa_015637 [Cucumis sativus]) HSP 1 Score: 161.8 bits (408), Expect = 3.1e-36 Identity = 84/98 (85.71%), Postives = 87/98 (88.78%), Query Frame = 0
BLAST of CmoCh08G005680 vs. TAIR 10
Match: AT5G43150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 57.0 bits (136), Expect = 9.9e-09 Identity = 28/78 (35.90%), Postives = 45/78 (57.69%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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