CmoCh08G004500 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTTTCGTTGATCGTTTTAAGGTGTTCAGTTCGTTCTCTTTGGATTCAATCACTTCGATGAGAAACAGGTATCTCGCATATTTTTTAAACTCTCTGTTTATTGCTTGTTTGTTTGCTATGACTATGAGTTAAGCATCGGAGAACTGGTTTAGAACGTTATTTTGTTGTTTTTGTATCTCTTTTTAGATTCAGGCCACGCTAATCTATGGCGGAGGGGTTGATATTGGTCAGTATGGCCTGAATTGCACTCATGTGATCGTGAATAAGGATAAGATCGTTTATGTAAATCGTACTTCGTTTGAGTCGATTTGAAAATTAATTTTATAATGTTCACGATTATTGTGTGCTTGTGATGTTACACTGGGACTGCCTTGTGAATTTAGTTTCTCCGTTACTATGTATGTTTCATAGGACGATCCTGTTTGTGTTATGACATGGAGAGGCTTGAAGCTGAGGCTAAGGATTCTGAAGAAGAATCTAGCAGTGGCATCACTAAACATTTGTGAGGAGGAACAGGAAGAGTCCTAA ATGTTTTCGTTGATCTTCGTTCTCTTTGGATTCAATCACTTCGATGAGAAACAGATTCAGGCCACGCTAATCTATGGCGGAGGGGTTGATATTGGTCAGTATGGCCTGAATTGCACTCATGTGATCGTGAATAAGGATAAGATCGTTTATGACGATCCTGTTTGTGTTATGACATGGAGAGGCTTGAAGCTGAGGCTAAGGATTCTGAAGAAGAATCTAGCAGTGGCATCACTAAACATTTGTGAGGAGGAACAGGAAGAGTCCTAA ATGTTTTCGTTGATCTTCGTTCTCTTTGGATTCAATCACTTCGATGAGAAACAGATTCAGGCCACGCTAATCTATGGCGGAGGGGTTGATATTGGTCAGTATGGCCTGAATTGCACTCATGTGATCGTGAATAAGGATAAGATCGTTTATGACGATCCTGTTTGTGTTATGACATGGAGAGGCTTGAAGCTGAGGCTAAGGATTCTGAAGAAGAATCTAGCAGTGGCATCACTAAACATTTGTGAGGAGGAACAGGAAGAGTCCTAA MFSLIFVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCVMTWRGLKLRLRILKKNLAVASLNICEEEQEES Homology
BLAST of CmoCh08G004500 vs. ExPASy Swiss-Prot
Match: O04251 (BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana OX=3702 GN=At4g02110 PE=4 SV=3) HSP 1 Score: 60.8 bits (146), Expect = 8.6e-09 Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 0
BLAST of CmoCh08G004500 vs. ExPASy TrEMBL
Match: A0A6J1JVC5 (BRCT domain-containing protein At4g02110 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488182 PE=4 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 1.7e-15 Identity = 40/51 (78.43%), Postives = 48/51 (94.12%), Query Frame = 0
BLAST of CmoCh08G004500 vs. ExPASy TrEMBL
Match: A0A6J1GMX9 (BRCT domain-containing protein At4g02110 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455969 PE=4 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 8.4e-15 Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 0
BLAST of CmoCh08G004500 vs. ExPASy TrEMBL
Match: A0A6J1D9V0 (BRCT domain-containing protein At4g02110 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018374 PE=4 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14 Identity = 39/51 (76.47%), Postives = 46/51 (90.20%), Query Frame = 0
BLAST of CmoCh08G004500 vs. ExPASy TrEMBL
Match: A0A5D3D1U4 (BRCT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001600 PE=4 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 5.4e-14 Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 0
BLAST of CmoCh08G004500 vs. ExPASy TrEMBL
Match: A0A1S3BRK5 (BRCT domain-containing protein At4g02110 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492766 PE=4 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 5.4e-14 Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 0
BLAST of CmoCh08G004500 vs. NCBI nr
Match: KAG6593231.1 (BRCT domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 148.3 bits (373), Expect = 3.1e-32 Identity = 71/73 (97.26%), Postives = 71/73 (97.26%), Query Frame = 0
BLAST of CmoCh08G004500 vs. NCBI nr
Match: XP_022991619.1 (BRCT domain-containing protein At4g02110 isoform X1 [Cucurbita maxima]) HSP 1 Score: 91.7 bits (226), Expect = 3.5e-15 Identity = 40/51 (78.43%), Postives = 48/51 (94.12%), Query Frame = 0
BLAST of CmoCh08G004500 vs. NCBI nr
Match: KAG7014323.1 (BRCT domain-containing protein [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 89.4 bits (220), Expect = 1.7e-14 Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 0
BLAST of CmoCh08G004500 vs. NCBI nr
Match: XP_023548771.1 (BRCT domain-containing protein At4g02110 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 89.4 bits (220), Expect = 1.7e-14 Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 0
BLAST of CmoCh08G004500 vs. NCBI nr
Match: KAG6575781.1 (BRCT domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 89.4 bits (220), Expect = 1.7e-14 Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 0
BLAST of CmoCh08G004500 vs. TAIR 10
Match: AT4G02110.1 (transcription coactivators ) HSP 1 Score: 60.8 bits (146), Expect = 6.1e-10 Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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