CmoCh08G004500 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh08G004500
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionBRCT domain-containing protein
LocationCmo_Chr08: 2782652 .. 2783181 (+)
RNA-Seq ExpressionCmoCh08G004500
SyntenyCmoCh08G004500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTCGTTGATCGTTTTAAGGTGTTCAGTTCGTTCTCTTTGGATTCAATCACTTCGATGAGAAACAGGTATCTCGCATATTTTTTAAACTCTCTGTTTATTGCTTGTTTGTTTGCTATGACTATGAGTTAAGCATCGGAGAACTGGTTTAGAACGTTATTTTGTTGTTTTTGTATCTCTTTTTAGATTCAGGCCACGCTAATCTATGGCGGAGGGGTTGATATTGGTCAGTATGGCCTGAATTGCACTCATGTGATCGTGAATAAGGATAAGATCGTTTATGTAAATCGTACTTCGTTTGAGTCGATTTGAAAATTAATTTTATAATGTTCACGATTATTGTGTGCTTGTGATGTTACACTGGGACTGCCTTGTGAATTTAGTTTCTCCGTTACTATGTATGTTTCATAGGACGATCCTGTTTGTGTTATGACATGGAGAGGCTTGAAGCTGAGGCTAAGGATTCTGAAGAAGAATCTAGCAGTGGCATCACTAAACATTTGTGAGGAGGAACAGGAAGAGTCCTAA

mRNA sequence

ATGTTTTCGTTGATCTTCGTTCTCTTTGGATTCAATCACTTCGATGAGAAACAGATTCAGGCCACGCTAATCTATGGCGGAGGGGTTGATATTGGTCAGTATGGCCTGAATTGCACTCATGTGATCGTGAATAAGGATAAGATCGTTTATGACGATCCTGTTTGTGTTATGACATGGAGAGGCTTGAAGCTGAGGCTAAGGATTCTGAAGAAGAATCTAGCAGTGGCATCACTAAACATTTGTGAGGAGGAACAGGAAGAGTCCTAA

Coding sequence (CDS)

ATGTTTTCGTTGATCTTCGTTCTCTTTGGATTCAATCACTTCGATGAGAAACAGATTCAGGCCACGCTAATCTATGGCGGAGGGGTTGATATTGGTCAGTATGGCCTGAATTGCACTCATGTGATCGTGAATAAGGATAAGATCGTTTATGACGATCCTGTTTGTGTTATGACATGGAGAGGCTTGAAGCTGAGGCTAAGGATTCTGAAGAAGAATCTAGCAGTGGCATCACTAAACATTTGTGAGGAGGAACAGGAAGAGTCCTAA

Protein sequence

MFSLIFVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCVMTWRGLKLRLRILKKNLAVASLNICEEEQEES
Homology
BLAST of CmoCh08G004500 vs. ExPASy Swiss-Prot
Match: O04251 (BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana OX=3702 GN=At4g02110 PE=4 SV=3)

HSP 1 Score: 60.8 bits (146), Expect = 8.6e-09
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 6  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV 57
          F L GFN      +++ L+ GGGVD+GQ+  +CTH+IV  DK++YDDP+CV
Sbjct: 17 FALVGFNPIHGNSLRSKLVSGGGVDVGQFTQSCTHLIV--DKLLYDDPICV 65

BLAST of CmoCh08G004500 vs. ExPASy TrEMBL
Match: A0A6J1JVC5 (BRCT domain-containing protein At4g02110 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488182 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.7e-15
Identity = 40/51 (78.43%), Postives = 48/51 (94.12%), Query Frame = 0

Query: 6  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV 57
          FVLFGFN+FDEKQ+++ LI GGGVD+GQYG +CTHVIV+K+KIVYDDPVCV
Sbjct: 14 FVLFGFNNFDEKQVRSKLIDGGGVDVGQYGPSCTHVIVDKNKIVYDDPVCV 64

BLAST of CmoCh08G004500 vs. ExPASy TrEMBL
Match: A0A6J1GMX9 (BRCT domain-containing protein At4g02110 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455969 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 8.4e-15
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 0

Query: 6  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV 57
          FVLFGFN+ DEKQ+++ LI GGGVD+GQYG +CTHVIV+K+KIVYDDPVCV
Sbjct: 14 FVLFGFNYVDEKQVRSKLIDGGGVDVGQYGPSCTHVIVDKNKIVYDDPVCV 64

BLAST of CmoCh08G004500 vs. ExPASy TrEMBL
Match: A0A6J1D9V0 (BRCT domain-containing protein At4g02110 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018374 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14
Identity = 39/51 (76.47%), Postives = 46/51 (90.20%), Query Frame = 0

Query: 6  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV 57
          FVLFGF+H DEK++++ LI GGGVD GQYG +CTHVIV+KDKIVYDDPVCV
Sbjct: 15 FVLFGFSHVDEKRVRSKLISGGGVDAGQYGPSCTHVIVDKDKIVYDDPVCV 65

BLAST of CmoCh08G004500 vs. ExPASy TrEMBL
Match: A0A5D3D1U4 (BRCT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001600 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.4e-14
Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 0

Query: 6  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV 57
          FVLFGFN  DEKQ+++ LI GGGVD+GQYG +C+HVIV+K+KIVYDDPVCV
Sbjct: 15 FVLFGFNSVDEKQVRSKLIDGGGVDVGQYGPSCSHVIVDKNKIVYDDPVCV 65

BLAST of CmoCh08G004500 vs. ExPASy TrEMBL
Match: A0A1S3BRK5 (BRCT domain-containing protein At4g02110 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492766 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.4e-14
Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 0

Query: 6  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV 57
          FVLFGFN  DEKQ+++ LI GGGVD+GQYG +C+HVIV+K+KIVYDDPVCV
Sbjct: 15 FVLFGFNSVDEKQVRSKLIDGGGVDVGQYGPSCSHVIVDKNKIVYDDPVCV 65

BLAST of CmoCh08G004500 vs. NCBI nr
Match: KAG6593231.1 (BRCT domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148.3 bits (373), Expect = 3.1e-32
Identity = 71/73 (97.26%), Postives = 71/73 (97.26%), Query Frame = 0

Query: 6  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCVMTWRGLKLR 65
          FVLFGFNHFDEKQIQATLIYGGGVDIGQYG NCTHVIVNKDKIVYDDPVCVMTW GLKLR
Sbjct: 12 FVLFGFNHFDEKQIQATLIYGGGVDIGQYGPNCTHVIVNKDKIVYDDPVCVMTWTGLKLR 71

Query: 66 LRILKKNLAVASL 79
          LRILKKNLAVASL
Sbjct: 72 LRILKKNLAVASL 84

BLAST of CmoCh08G004500 vs. NCBI nr
Match: XP_022991619.1 (BRCT domain-containing protein At4g02110 isoform X1 [Cucurbita maxima])

HSP 1 Score: 91.7 bits (226), Expect = 3.5e-15
Identity = 40/51 (78.43%), Postives = 48/51 (94.12%), Query Frame = 0

Query: 6  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV 57
          FVLFGFN+FDEKQ+++ LI GGGVD+GQYG +CTHVIV+K+KIVYDDPVCV
Sbjct: 14 FVLFGFNNFDEKQVRSKLIDGGGVDVGQYGPSCTHVIVDKNKIVYDDPVCV 64

BLAST of CmoCh08G004500 vs. NCBI nr
Match: KAG7014323.1 (BRCT domain-containing protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.4 bits (220), Expect = 1.7e-14
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 0

Query: 6  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV 57
          FVLFGFN+ DEKQ+++ LI GGGVD+GQYG +CTHVIV+K+KIVYDDPVCV
Sbjct: 14 FVLFGFNYVDEKQVRSKLIDGGGVDVGQYGPSCTHVIVDKNKIVYDDPVCV 64

BLAST of CmoCh08G004500 vs. NCBI nr
Match: XP_023548771.1 (BRCT domain-containing protein At4g02110 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.4 bits (220), Expect = 1.7e-14
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 0

Query: 6  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV 57
          FVLFGFN+ DEKQ+++ LI GGGVD+GQYG +CTHVIV+K+KIVYDDPVCV
Sbjct: 14 FVLFGFNYVDEKQVRSKLIDGGGVDVGQYGPSCTHVIVDKNKIVYDDPVCV 64

BLAST of CmoCh08G004500 vs. NCBI nr
Match: KAG6575781.1 (BRCT domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.4 bits (220), Expect = 1.7e-14
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 0

Query: 6  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV 57
          FVLFGFN+ DEKQ+++ LI GGGVD+GQYG +CTHVIV+K+KIVYDDPVCV
Sbjct: 14 FVLFGFNYVDEKQVRSKLIDGGGVDVGQYGPSCTHVIVDKNKIVYDDPVCV 64

BLAST of CmoCh08G004500 vs. TAIR 10
Match: AT4G02110.1 (transcription coactivators )

HSP 1 Score: 60.8 bits (146), Expect = 6.1e-10
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 6  FVLFGFNHFDEKQIQATLIYGGGVDIGQYGLNCTHVIVNKDKIVYDDPVCV 57
          F L GFN      +++ L+ GGGVD+GQ+  +CTH+IV  DK++YDDP+CV
Sbjct: 17 FALVGFNPIHGNSLRSKLVSGGGVDVGQFTQSCTHLIV--DKLLYDDPICV 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
O042518.6e-0950.98BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana OX=3702 GN=At4g... [more]
Match NameE-valueIdentityDescription
A0A6J1JVC51.7e-1578.43BRCT domain-containing protein At4g02110 isoform X1 OS=Cucurbita maxima OX=3661 ... [more]
A0A6J1GMX98.4e-1576.47BRCT domain-containing protein At4g02110 isoform X1 OS=Cucurbita moschata OX=366... [more]
A0A6J1D9V01.1e-1476.47BRCT domain-containing protein At4g02110 isoform X1 OS=Momordica charantia OX=36... [more]
A0A5D3D1U45.4e-1474.51BRCT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A1S3BRK55.4e-1474.51BRCT domain-containing protein At4g02110 isoform X1 OS=Cucumis melo OX=3656 GN=L... [more]
Match NameE-valueIdentityDescription
KAG6593231.13.1e-3297.26BRCT domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022991619.13.5e-1578.43BRCT domain-containing protein At4g02110 isoform X1 [Cucurbita maxima][more]
KAG7014323.11.7e-1476.47BRCT domain-containing protein [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023548771.11.7e-1476.47BRCT domain-containing protein At4g02110 isoform X1 [Cucurbita pepo subsp. pepo][more]
KAG6575781.11.7e-1476.47BRCT domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
AT4G02110.16.1e-1050.98transcription coactivators [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044254BRCT domain-containing protein At4g02110-likePANTHERPTHR47181BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSEDcoord: 6..56
IPR036420BRCT domain superfamilySUPERFAMILY52113BRCT domaincoord: 4..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G004500.1CmoCh08G004500.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding