CmoCh08G001090 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh08G001090
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr08: 567270 .. 567925 (-)
RNA-Seq ExpressionCmoCh08G001090
SyntenyCmoCh08G001090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCTATTACTTTATTTGAAATTGACGGTTCATAAACAGAAAAAACGTTCAAACATTCAAAATCCCGTGATGTTCTTTAAGAAAAAACGTTTTTTTTTATTTATAATATTTTGAATAATGATTAAAACAGTTGATGTTATCTTCCCTCCAAGGAATCTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGACATACATAATAGGCGGTGACAGTGCCGGCGGAGTTACCGGCGACGAGCTTAAGCTGCATATCAATCCGGCCAAAGAGGTACTGTTTTTTGGACTGAAAACCAGACCCAGAAACCCTATCAAGAGAGAGAGAGAGAAGGGAGCCGCCATTGAAGACCTTAGCTCTATCTCCGCCCCAAGTGATCTCAAAATCCTCATAAAAGCTTCCCCCGTAAGCACGAAAAGCCCCCATAAGAAGAACCCACCAAAACGCCACGCTTATGGCTGCGGAGCCGTAGGCCATGGCCGTCTAGAGAGAGAGAGAGAGGAAGAAGGAAAGATGGGTTTGCCTGAGAAAGGGAGAAAGGAATTTATAAGAGAAGGATGGAGTAGTAATGAGAGGCGTGGGGGACGCGTGAAGAGGAAGAAGAAGAAGAAGGAAGAGCGGAAGGGAAGGGAAGGTGGTGACAGCGCGGCAGATTAG

mRNA sequence

ATGGGTCTATTACTTTATTTGAAATTGACGGAATCTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGACATACATAATAGGCGGTGACAGTGCCGGCGGAGTTACCGGCGACGAGCTTAAGCTGCATATCAATCCGGCCAAAGAGGTACTGTTTTTTGGACTGAAAACCAGACCCAGAAACCCTATCAAGAGAGAGAGAGAGAAGGGAGCCGCCATTGAAGACCTTAGCTCTATCTCCGCCCCAAGTGATCTCAAAATCCTCATAAAAGCTTCCCCCGTAAGCACGAAAAGCCCCCATAAGAAGAACCCACCAAAACGCCACGCTTATGGCTGCGGAGCCGTAGGCCATGGCCGTCTAGAGAGAGAGAGAGAGGAAGAAGGAAAGATGGGTTTGCCTGAGAAAGGGAGAAAGGAATTTATAAGAGAAGGATGGAGTAGTAATGAGAGGCGTGGGGGACGCGTGAAGAGGAAGAAGAAGAAGAAGGAAGAGCGGAAGGGAAGGGAAGGTGGTGACAGCGCGGCAGATTAG

Coding sequence (CDS)

ATGGGTCTATTACTTTATTTGAAATTGACGGAATCTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGACATACATAATAGGCGGTGACAGTGCCGGCGGAGTTACCGGCGACGAGCTTAAGCTGCATATCAATCCGGCCAAAGAGGTACTGTTTTTTGGACTGAAAACCAGACCCAGAAACCCTATCAAGAGAGAGAGAGAGAAGGGAGCCGCCATTGAAGACCTTAGCTCTATCTCCGCCCCAAGTGATCTCAAAATCCTCATAAAAGCTTCCCCCGTAAGCACGAAAAGCCCCCATAAGAAGAACCCACCAAAACGCCACGCTTATGGCTGCGGAGCCGTAGGCCATGGCCGTCTAGAGAGAGAGAGAGAGGAAGAAGGAAAGATGGGTTTGCCTGAGAAAGGGAGAAAGGAATTTATAAGAGAAGGATGGAGTAGTAATGAGAGGCGTGGGGGACGCGTGAAGAGGAAGAAGAAGAAGAAGGAAGAGCGGAAGGGAAGGGAAGGTGGTGACAGCGCGGCAGATTAG

Protein sequence

MGLLLYLKLTESEEEEEEEEEEKTYIIGGDSAGGVTGDELKLHINPAKEVLFFGLKTRPRNPIKREREKGAAIEDLSSISAPSDLKILIKASPVSTKSPHKKNPPKRHAYGCGAVGHGRLEREREEEGKMGLPEKGRKEFIREGWSSNERRGGRVKRKKKKKEERKGREGGDSAAD
Homology
BLAST of CmoCh08G001090 vs. ExPASy TrEMBL
Match: A0A426Y063 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00035561 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.8e-08
Identity = 32/70 (45.71%), Postives = 50/70 (71.43%), Query Frame = 0

Query: 23  KTYIIGGDSAGGVTGDELKLHINPAKEVLFFGLKTRPRNPIKREREKGAAIEDLSSISAP 82
           + YI+G D AGGV G+EL LH++ A+EVL  GL++R R P++ E E+ AA+EDL +  A 
Sbjct: 244 RAYIVGSDGAGGVPGNELDLHVDLAEEVLVLGLESRARGPVEGEGEELAALEDLGAGFAL 303

Query: 83  SDLKILIKAS 93
            D ++L++ +
Sbjct: 304 GDGELLVEVA 313

BLAST of CmoCh08G001090 vs. ExPASy TrEMBL
Match: B8B232 (Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24314 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-07
Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 0

Query: 28  GGDSAGGVTGDELKLHINPAKEVLFFGLKTRPRNPIKREREKGAAIEDLSSISAPSDLKI 87
           GGD AGGV GDEL LH++ A+EVL  GL+ R   P+KRE E  A I+DL++   P  L++
Sbjct: 223 GGDGAGGVAGDELDLHVDLAEEVLALGLEPRAGAPVKREVEPTATIDDLAAALPPRHLRV 282

Query: 88  LIKASPVST--KSPHKKNPPKRH 109
           L + + +    ++ H+ N  KRH
Sbjct: 283 LEEVASMRNGHQAGHRHN-AKRH 304

BLAST of CmoCh08G001090 vs. ExPASy TrEMBL
Match: B9FQP1 (Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_22490 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-07
Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 0

Query: 28  GGDSAGGVTGDELKLHINPAKEVLFFGLKTRPRNPIKREREKGAAIEDLSSISAPSDLKI 87
           GGD AGGV GDEL LH++ A+EVL  GL+ R   P+KRE E  A I+DL++   P  L++
Sbjct: 223 GGDGAGGVAGDELDLHVDLAEEVLALGLEPRAGAPVKREVEPTATIDDLAAALPPRHLRV 282

Query: 88  LIKASPVST--KSPHKKNPPKRH 109
           L + + +    ++ H+ N  KRH
Sbjct: 283 LEEVASMRNGHQAGHRHN-AKRH 304

BLAST of CmoCh08G001090 vs. ExPASy TrEMBL
Match: A0A7I8KP48 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_06009390 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04
Identity = 24/75 (32.00%), Postives = 46/75 (61.33%), Query Frame = 0

Query: 18  EEEEEKTYIIGGDSAGGVTGDELKLHINPAKEVLFFGLKTRPRNPIKREREKGAAIEDLS 77
           +E+  + ++ GGD AGGV GDEL+L ++  +E L  GL+      ++ + E+ A +EDL 
Sbjct: 146 DEKGVRVHVEGGDGAGGVAGDELELDVDLGEEKLLLGLEAGAGGAVQGQGEEAALVEDLG 205

Query: 78  SISAPSDLKILIKAS 93
            +  P ++ +L++ +
Sbjct: 206 PVGTPGEVNVLVEVA 220

BLAST of CmoCh08G001090 vs. ExPASy TrEMBL
Match: A0A0N7KMN2 (Os06g0696450 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0696450 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.7e-04
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 0

Query: 28  GGDSAGGVTGDELKLHINPAKEVLFFGLKTRPRNPIKREREKGAAIE 75
           GGD AGGV GDEL LH++ A+EVL  GL+ R   P+KRE E  A I+
Sbjct: 173 GGDGAGGVAGDELDLHVDLAEEVLALGLEPRAGAPVKREVEPTATID 219

BLAST of CmoCh08G001090 vs. NCBI nr
Match: KAG7025302.1 (hypothetical protein SDJN02_11797, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 71.2 bits (173), Expect = 9.8e-09
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 13  EEEEEEEEEEKTYIIGGDSAGGVTGDELKLHINPAKEVLFFGLKTRPRNPIKREREKG 71
           +++EEEEEEEKTYIIGGDSAGGVTGDELKLHINPAKE        +P    +RE  +G
Sbjct: 155 KKKEEEEEEEKTYIIGGDSAGGVTGDELKLHINPAKET------QKPYQEREREGSRG 206

BLAST of CmoCh08G001090 vs. NCBI nr
Match: RRT45126.1 (hypothetical protein B296_00035561 [Ensete ventricosum])

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-07
Identity = 32/70 (45.71%), Postives = 50/70 (71.43%), Query Frame = 0

Query: 23  KTYIIGGDSAGGVTGDELKLHINPAKEVLFFGLKTRPRNPIKREREKGAAIEDLSSISAP 82
           + YI+G D AGGV G+EL LH++ A+EVL  GL++R R P++ E E+ AA+EDL +  A 
Sbjct: 244 RAYIVGSDGAGGVPGNELDLHVDLAEEVLVLGLESRARGPVEGEGEELAALEDLGAGFAL 303

Query: 83  SDLKILIKAS 93
            D ++L++ +
Sbjct: 304 GDGELLVEVA 313

BLAST of CmoCh08G001090 vs. NCBI nr
Match: EEE66283.1 (hypothetical protein OsJ_22490 [Oryza sativa Japonica Group])

HSP 1 Score: 65.5 bits (158), Expect = 5.4e-07
Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 0

Query: 28  GGDSAGGVTGDELKLHINPAKEVLFFGLKTRPRNPIKREREKGAAIEDLSSISAPSDLKI 87
           GGD AGGV GDEL LH++ A+EVL  GL+ R   P+KRE E  A I+DL++   P  L++
Sbjct: 223 GGDGAGGVAGDELDLHVDLAEEVLALGLEPRAGAPVKREVEPTATIDDLAAALPPRHLRV 282

Query: 88  LIKASPVST--KSPHKKNPPKRH 109
           L + + +    ++ H+ N  KRH
Sbjct: 283 LEEVASMRNGHQAGHRHN-AKRH 304

BLAST of CmoCh08G001090 vs. NCBI nr
Match: EEC81245.1 (hypothetical protein OsI_24314 [Oryza sativa Indica Group])

HSP 1 Score: 65.5 bits (158), Expect = 5.4e-07
Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 0

Query: 28  GGDSAGGVTGDELKLHINPAKEVLFFGLKTRPRNPIKREREKGAAIEDLSSISAPSDLKI 87
           GGD AGGV GDEL LH++ A+EVL  GL+ R   P+KRE E  A I+DL++   P  L++
Sbjct: 223 GGDGAGGVAGDELDLHVDLAEEVLALGLEPRAGAPVKREVEPTATIDDLAAALPPRHLRV 282

Query: 88  LIKASPVST--KSPHKKNPPKRH 109
           L + + +    ++ H+ N  KRH
Sbjct: 283 LEEVASMRNGHQAGHRHN-AKRH 304

BLAST of CmoCh08G001090 vs. NCBI nr
Match: MQM01647.1 (hypothetical protein [Colocasia esculenta])

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-06
Identity = 37/104 (35.58%), Postives = 62/104 (59.62%), Query Frame = 0

Query: 21  EEKTYIIGGDSAGGVTGDELKLHINPAKEVLFFGLKTRPRNPIKREREKGAAIEDLSSIS 80
           E +T+I+GGD AGGV GDEL LH++ A+EVL  GL+      ++ + E+ A +EDL+S  
Sbjct: 254 ETQTHIVGGDGAGGVAGDELYLHVDLAEEVLVLGLEPGAGGLVEGQGEQLAVVEDLASAI 313

Query: 81  APSDLKILIKASPVSTKSPHKKNPPKR----HAY-GCGAVGHGR 120
           AP ++++ ++    +     +++  +R    H + G G   HGR
Sbjct: 314 APGNVEVPVEVGGHNKGEQGEEDGAERGSQHHPHRGIGRQSHGR 357

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A426Y0636.8e-0845.71Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00035561 PE=4 SV=1[more]
B8B2322.6e-0744.58Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24314 PE=4... [more]
B9FQP12.6e-0744.58Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_22490 PE... [more]
A0A7I8KP481.2e-0432.00Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_06009390 PE=4 SV... [more]
A0A0N7KMN22.7e-0457.45Os06g0696450 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os06... [more]
Match NameE-valueIdentityDescription
KAG7025302.19.8e-0965.52hypothetical protein SDJN02_11797, partial [Cucurbita argyrosperma subsp. argyro... [more]
RRT45126.11.4e-0745.71hypothetical protein B296_00035561 [Ensete ventricosum][more]
EEE66283.15.4e-0744.58hypothetical protein OsJ_22490 [Oryza sativa Japonica Group][more]
EEC81245.15.4e-0744.58hypothetical protein OsI_24314 [Oryza sativa Indica Group][more]
MQM01647.12.0e-0635.58hypothetical protein [Colocasia esculenta][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..151
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..176
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G001090.1CmoCh08G001090.1mRNA