CmoCh07G010190 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh07G010190
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionGlycine rich RNA binding protein
LocationCmo_Chr07: 5049756 .. 5052363 (-)
RNA-Seq ExpressionCmoCh07G010190
SyntenyCmoCh07G010190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGAAAAAAAAGGAAACTATTAAAGTAAAGAACGTGGTGTCCGGAGTAGGCCAAAAACCCTAACCCCTGAATATCATCTCTGTTGTAGTGTGGTTATTCTCTCTTCCCATCGGCCGATCAAATCAGATGGCTTTCTTCTCCACTGTGAGGCGCGTTCTTAATGGATCTTCCTCTTCTTCTTCCGTTCTTCGATCACAGTGGACTTGTTTTCGTCTCAGCTCAACTCTCACATCGCCTAAGCTCTTCATCAGTGGTACGTTTCGCAGAAAAAAAACAATCAGCTCGTAACGCCTTTTTTCTACCCCTTTGATTTTGTTAATTTCATCCATTTGGATATTGAGAATGATATGGAATTTGGTATTAGGCTCTAATTTCTGTTTGGATGCTGAGAAATTTCTGAGATTGTTGCTACCCCTTTATCTCTTATACTCAATCGATTAGTTTCGGTCGGAGGCACTAAATGGATTAATTGTTAATCGATTATGCTCTGTTCTGTTCCATTCTTTGCACTCTATTTCTGGTCTTTCTCTTCAAGTGGAAGGAAGCTTCTTTCCCTATATGAACTTGTGAAATTACTTCGCTGTTTAGTAAGTGGGGGGATTTGTTTTGGCGAATGAAATTAGAAATGTATTCCGATTTTATTTGTACCTATAAAATACGTAGATTTGTGTGCCTGCTTGATGTCTCGAACAATTCTTGCATTGGAAAGTTCCAAGAAATCTTTGCTAATTCATGTTTATGCGACTCGATATGCGCTTTGCGTTTGAAGGTTTGCTATTTGGCTGACAAACCTTGCAAGTACAATGGAGTACTAAAATTTTTTCCCTTCCCCCCACCCCATGGAAAAGCATTGATGAACCTTCTCATTTGTGGGTTTCTATTTTTTTGTCTTCTTTCAGAGGGGTTTTTTCTTAGTACTATAGTGAACCTCCATCTCTAGAATGATAAGATATTGTTCACGTTGGACATAAACGCTCATCACACTACTTTTGGCTTTTCCAAAATGACTTATACCAATGAAAATAATTATAACGGCTCAAGCCCACTGCTAGCAAATATTGTCCTCTTTATTTTCCTCTTTCGGCTTTCTCTCAAGGTTTTTAAAACGCGTCTATTAGGGAGAGGTTTCCACTCCCATACAAGACAATTTGGTCGAGTGGTCTAAGGTGCACCTTCCTTTTCGGTGGCTCAATCTTAAAAACTCCAAAGTTAAACGTGTTTTGTTTGGAACAATTCTATGTTGGACGGTTACGCTTGGTATTAGAGCTAGACATTGAGCGATGCCAACAAGGAGGTTGAGCCTTGAAGAGGGGTGGACACGAGACGGTGTGCGAGTAAGGACGCTGGGTCCTGAAGGGGGGGTGAATTGGGGGATCCCACTTCGATTGGAAGAGGGAACGAGTGCCAGTGAGGATGCTAGACCCCGAAGGGGGTGGATTATGAAATCCCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCATTTTAAAAACTTTGAGACGATACCCGAAACCTCTCCCTAGCAGACGTGTTTTAAAAACCTTCAGACGATTCCCGGAACTTCTCCCTAGCGGTGGACTTGGACCGTTACAATAATTGTCCTCTCTTATATATCCATGACCACTCTCTTCCTTGGCCAATGGGGAAGTTTGTTTCCTATCCTAACTGTTCTTATCCTTTCTTCACAATTTGAATATTAGTAAGTGATGTATTAGATATGTTTCATTGGTCTACACTTTTCTTAAATGTTGTTGTTATGGTAAACAAGTAGTTTAAAAATTATAGTAATAGAAAATTTTCTTGTTATGGTTGGATATTGAATGACCTCCACATGATGTCTTTCATAATCTAATATTCTTTATGAACTTGCATCAGCCTAAGTTTTGATTTGTGGCTGAGCCATGATGAACTGTTTGACCTGTTTTGGATTGGTTTCATTCTTATAAAATGCACAGGTCTTTCAAGATTAACAACAGACGAGAAGCTCCAGGAAGCCTTTACTTCCTTCGGTCAGCTTGTAGAAGGTCCAACTCTCTCTCCCTCTCTCAAATTTACAATTCCATGAACATCTGTTGCAGAGTACTCCATGTTGACATTGCCTCAACATTTGTACAGCGAAAGTTATAACCGATAGGGCAACGGGAAGATCAAAGGGGTTCGGGTTTGTAACGTACAGTACAATAGAAGAGGCTGAGAAAGCAAGAGAAGGAATGAACGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCGCCTCCTCCACAGCCTCAATCTGCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGTTGATTGATTGATTGCCTGCAAAATCTATATGAAACTTCATATGATTTTGGTCATTTTTTCATATTGTTCATCATCCATGGGTAGTGTAGTATAGATAAGTTTCATGAGACAATACCTTAGGAGCCTGAAAAGGGTAAAATTTTGTTATATGTATGGATTCAGAAAGAGGGGAAAGGAGCTTTTCATTAAATTTAAACATATTTAATTATTATTATTAGTA

mRNA sequence

AAAGAAAAAAAAGGAAACTATTAAAGTAAAGAACGTGGTGTCCGGAGTAGGCCAAAAACCCTAACCCCTGAATATCATCTCTGTTGTAGTGTGGTTATTCTCTCTTCCCATCGGCCGATCAAATCAGATGGCTTTCTTCTCCACTGTGAGGCGCGTTCTTAATGGATCTTCCTCTTCTTCTTCCGTTCTTCGATCACAGTGGACTTGTTTTCGTCTCAGCTCAACTCTCACATCGCCTAAGCTCTTCATCAGTGGTCTTTCAAGATTAACAACAGACGAGAAGCTCCAGGAAGCCTTTACTTCCTTCGGTCAGCTTGTAGAAGCGAAAGTTATAACCGATAGGGCAACGGGAAGATCAAAGGGGTTCGGGTTTGTAACGTACAGTACAATAGAAGAGGCTGAGAAAGCAAGAGAAGGAATGAACGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCGCCTCCTCCACAGCCTCAATCTGCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGTTGATTGATTGATTGCCTGCAAAATCTATATGAAACTTCATATGATTTTGGTCATTTTTTCATATTGTTCATCATCCATGGGTAGTGTAGTATAGATAAGTTTCATGAGACAATACCTTAGGAGCCTGAAAAGGGTAAAATTTTGTTATATGTATGGATTCAGAAAGAGGGGAAAGGAGCTTTTCATTAAATTTAAACATATTTAATTATTATTATTAGTA

Coding sequence (CDS)

ATGGCTTTCTTCTCCACTGTGAGGCGCGTTCTTAATGGATCTTCCTCTTCTTCTTCCGTTCTTCGATCACAGTGGACTTGTTTTCGTCTCAGCTCAACTCTCACATCGCCTAAGCTCTTCATCAGTGGTCTTTCAAGATTAACAACAGACGAGAAGCTCCAGGAAGCCTTTACTTCCTTCGGTCAGCTTGTAGAAGCGAAAGTTATAACCGATAGGGCAACGGGAAGATCAAAGGGGTTCGGGTTTGTAACGTACAGTACAATAGAAGAGGCTGAGAAAGCAAGAGAAGGAATGAACGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCGCCTCCTCCACAGCCTCAATCTGCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGTTGA

Protein sequence

MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPPQPQSAETSEFGIRTNKTIGWCG
Homology
BLAST of CmoCh07G010190 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-21
Identity = 51/92 (55.43%), Postives = 68/92 (73.91%), Query Frame = 0

Query: 36  SPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAR 95
           S  LF+SGLS+ TT E L+ AF  FG++ +AKV+TDR +G SKGFGFV Y+T+E++ K  
Sbjct: 55  STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114

Query: 96  EGMNAKFLDGWVIFVDPAKPREPRPPPPQPQS 128
            GM+ KFLDGWVIF + A+PRE +    QPQ+
Sbjct: 115 AGMDGKFLDGWVIFAEYARPRE-QSQSYQPQN 145

BLAST of CmoCh07G010190 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-16
Identity = 46/101 (45.54%), Postives = 67/101 (66.34%), Query Frame = 0

Query: 17  SSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGR 76
           S  ++ S  +CF       + KLFI GLS  TT++ L EAF+  GQ+VEA+++ DR + R
Sbjct: 14  SVCLINSSASCFFTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDR 73

Query: 77  SKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPRE 118
           SKGFGFVT+++ +EA+KA    N + L+G  IFVD AK ++
Sbjct: 74  SKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQ 114

BLAST of CmoCh07G010190 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.9e-16
Identity = 53/126 (42.06%), Postives = 73/126 (57.94%), Query Frame = 0

Query: 8   RRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAK 67
           RR + G   SS +     +    SS+    KL++SGLS  TT++ L++ F  FG L+   
Sbjct: 48  RRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMN 107

Query: 68  VITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPR------EPRPP 127
           ++ D+   R KGF F+ Y T EEA KA +GM+ KFLDG VIFV+ AK R      +PR  
Sbjct: 108 MVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRRD 167

BLAST of CmoCh07G010190 vs. ExPASy Swiss-Prot
Match: Q9FZ84 (Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG6 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-15
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 0

Query: 33  TLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAE 92
           +LT  K+F+ GLS  T  E L+EAF SFG++V+A V+ DR +G S+GFGFVTY +IE A 
Sbjct: 32  SLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVAN 91

Query: 93  KAREGMNAKFLDGWVIFVDPA 114
            A + M  K LDG +I V PA
Sbjct: 92  NAMQAMQNKELDGRIIGVHPA 112

BLAST of CmoCh07G010190 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.0e-15
Identity = 40/79 (50.63%), Postives = 57/79 (72.15%), Query Frame = 0

Query: 38  KLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREG 97
           + F+ GL+  T +E L++AF +FGQ++++KVITDR TGRS+GFGFVT+S+ +    A E 
Sbjct: 9   RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68

Query: 98  MNAKFLDGWVIFVDPAKPR 117
           MN K LDG  I V+ A+ R
Sbjct: 69  MNGKELDGRNITVNQAQSR 87

BLAST of CmoCh07G010190 vs. ExPASy TrEMBL
Match: A0A6J1HDN1 (organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111463207 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.0e-75
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0

Query: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60
           MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60

Query: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120
           GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP
Sbjct: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120

Query: 121 PPPQPQSAETSEFGIRTNKTIGWCG 146
           PPPQPQSAETSEFGIRTNKTIGWCG
Sbjct: 121 PPPQPQSAETSEFGIRTNKTIGWCG 145

BLAST of CmoCh07G010190 vs. ExPASy TrEMBL
Match: A0A6J1I6S8 (organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111471250 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.5e-72
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 0

Query: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60
           MAFFSTVRRVLNGSSSSSSVLRSQWT FRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60

Query: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR- 120
           GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR 
Sbjct: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120

Query: 121 PPPPQPQSAETSEFGIRTNKTIGWCG 146
           PPPPQPQSAETSEFGIRTNKTIGWCG
Sbjct: 121 PPPPQPQSAETSEFGIRTNKTIGWCG 146

BLAST of CmoCh07G010190 vs. ExPASy TrEMBL
Match: A0A6J1CQ59 (organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013559 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.5e-65
Identity = 134/147 (91.16%), Postives = 140/147 (95.24%), Query Frame = 0

Query: 1   MAFFSTVRRVLNGSSSS--SSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFT 60
           MAF S+VRRVLNGSSSS  SS+L+SQWT  RLSSTLTSPKLFISGLSRLTTDEKLQEAF+
Sbjct: 1   MAFLSSVRRVLNGSSSSAASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60

Query: 61  SFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREP 120
           SFGQLVEAKVITDRATGRSKGFGFVTY+TIE+AEKAREGMNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPPQPQSAETSEFGIRTNKTIGWCG 146
           R PPPQPQS ETSEFGIRTNKTIGWCG
Sbjct: 121 R-PPPQPQS-ETSEFGIRTNKTIGWCG 145

BLAST of CmoCh07G010190 vs. ExPASy TrEMBL
Match: A0A1S3BHV3 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490031 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.4e-62
Identity = 130/147 (88.44%), Postives = 138/147 (93.88%), Query Frame = 0

Query: 1   MAFFSTVRRVLNGS--SSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFT 60
           MAFFSTVRRVL+GS  SSSSS+LRSQW   RLSSTLTSPKLFISGLSRLTTDEKL+EAF+
Sbjct: 1   MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFS 60

Query: 61  SFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREP 120
           SFGQLV+AKV+TDRATGRSKGF FVTYSTIEEAE+AR+ MNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPPQPQSAETSEFGIRTNKTIGWCG 146
           R PPPQPQS ETSEFGIRTNKTIGWCG
Sbjct: 121 R-PPPQPQS-ETSEFGIRTNKTIGWCG 145

BLAST of CmoCh07G010190 vs. ExPASy TrEMBL
Match: A0A2I4DKH7 (organelle RRM domain-containing protein 2, mitochondrial OS=Juglans regia OX=51240 GN=LOC108981026 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 7.2e-56
Identity = 112/145 (77.24%), Postives = 130/145 (89.66%), Query Frame = 0

Query: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60
           MAF S++RR+L+GSS++SS+L SQ+   RL++TLTSPKLFISGLSRLTTDEKL+EAF+ F
Sbjct: 1   MAFVSSIRRLLSGSSTASSILHSQYASIRLNTTLTSPKLFISGLSRLTTDEKLKEAFSPF 60

Query: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120
           GQL++AKVI DRATGRSKGFGFVTY +IEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP
Sbjct: 61  GQLLDAKVIADRATGRSKGFGFVTYKSIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120

Query: 121 PPPQPQSAETSEFGIRTNKTIGWCG 146
           PP   Q  E+S+ G RTNKT+GWCG
Sbjct: 121 PPQPLQ--ESSDMGFRTNKTVGWCG 143

BLAST of CmoCh07G010190 vs. NCBI nr
Match: XP_022962832.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita moschata] >KAG6595304.1 Organelle RRM domain-containing protein 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027314.1 Organelle RRM domain-containing protein 2, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 289.7 bits (740), Expect = 1.4e-74
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0

Query: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60
           MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60

Query: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120
           GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP
Sbjct: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120

Query: 121 PPPQPQSAETSEFGIRTNKTIGWCG 146
           PPPQPQSAETSEFGIRTNKTIGWCG
Sbjct: 121 PPPQPQSAETSEFGIRTNKTIGWCG 145

BLAST of CmoCh07G010190 vs. NCBI nr
Match: XP_023517167.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.8 bits (730), Expect = 2.1e-73
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0

Query: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60
           MAFFSTVRRVLNGSSSSSSVLRSQWT FRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60

Query: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120
           GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP
Sbjct: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120

Query: 121 PPPQPQSAETSEFGIRTNKTIGWCG 146
           PPPQPQSAETSEFGIRTNKTIGWCG
Sbjct: 121 PPPQPQSAETSEFGIRTNKTIGWCG 145

BLAST of CmoCh07G010190 vs. NCBI nr
Match: XP_022972736.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima])

HSP 1 Score: 281.2 bits (718), Expect = 5.1e-72
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 0

Query: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60
           MAFFSTVRRVLNGSSSSSSVLRSQWT FRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60

Query: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR- 120
           GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR 
Sbjct: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120

Query: 121 PPPPQPQSAETSEFGIRTNKTIGWCG 146
           PPPPQPQSAETSEFGIRTNKTIGWCG
Sbjct: 121 PPPPQPQSAETSEFGIRTNKTIGWCG 146

BLAST of CmoCh07G010190 vs. NCBI nr
Match: XP_022143719.1 (organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia])

HSP 1 Score: 256.1 bits (653), Expect = 1.8e-64
Identity = 134/147 (91.16%), Postives = 140/147 (95.24%), Query Frame = 0

Query: 1   MAFFSTVRRVLNGSSSS--SSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFT 60
           MAF S+VRRVLNGSSSS  SS+L+SQWT  RLSSTLTSPKLFISGLSRLTTDEKLQEAF+
Sbjct: 1   MAFLSSVRRVLNGSSSSAASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60

Query: 61  SFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREP 120
           SFGQLVEAKVITDRATGRSKGFGFVTY+TIE+AEKAREGMNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPPQPQSAETSEFGIRTNKTIGWCG 146
           R PPPQPQS ETSEFGIRTNKTIGWCG
Sbjct: 121 R-PPPQPQS-ETSEFGIRTNKTIGWCG 145

BLAST of CmoCh07G010190 vs. NCBI nr
Match: XP_031739912.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KAE8649523.1 hypothetical protein Csa_018111 [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 4.3e-63
Identity = 132/148 (89.19%), Postives = 138/148 (93.24%), Query Frame = 0

Query: 1   MAFFSTVRRVLNG---SSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAF 60
           MAFFSTVRRVLNG   SSSSSS+LRSQW   RLSSTLTSPKLFISGLSRLTTDEKL+EAF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60

Query: 61  TSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPRE 120
           +SFGQLV+AKV+TDRATGRSKGF FVTYSTI+EAEKARE MNAKFLDGWVIFVDPAKPRE
Sbjct: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PRPPPPQPQSAETSEFGIRTNKTIGWCG 146
           PR PPPQPQS ETSEFGIRTNKTIGWCG
Sbjct: 121 PR-PPPQPQS-ETSEFGIRTNKTIGWCG 146

BLAST of CmoCh07G010190 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 192.6 bits (488), Expect = 2.2e-49
Identity = 100/144 (69.44%), Postives = 116/144 (80.56%), Query Frame = 0

Query: 1   MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSF 60
           MAF S+ RR++ G   SSS+L S   C R  STLTSP+LF+SGLSRLTT+EKLQ+AF SF
Sbjct: 1   MAFVSSFRRLVAG---SSSLLSSPSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASF 60

Query: 61  GQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRP 120
           GQLV+A+VITDR +GRSKGFGFVTY+TIE+AEKA+  MNAKFLDGWVIFVDPA+PREPR 
Sbjct: 61  GQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREPRR 120

Query: 121 PPPQPQSAETSEFGIRTNKTIGWC 145
           P  Q     +SE G  TNKTIGWC
Sbjct: 121 PLQQEPLRPSSESGFTTNKTIGWC 141

BLAST of CmoCh07G010190 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-22
Identity = 51/92 (55.43%), Postives = 68/92 (73.91%), Query Frame = 0

Query: 36  SPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAR 95
           S  LF+SGLS+ TT E L+ AF  FG++ +AKV+TDR +G SKGFGFV Y+T+E++ K  
Sbjct: 55  STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114

Query: 96  EGMNAKFLDGWVIFVDPAKPREPRPPPPQPQS 128
            GM+ KFLDGWVIF + A+PRE +    QPQ+
Sbjct: 115 AGMDGKFLDGWVIFAEYARPRE-QSQSYQPQN 145

BLAST of CmoCh07G010190 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 87.8 bits (216), Expect = 7.7e-18
Identity = 46/101 (45.54%), Postives = 67/101 (66.34%), Query Frame = 0

Query: 17  SSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGR 76
           S  ++ S  +CF       + KLFI GLS  TT++ L EAF+  GQ+VEA+++ DR + R
Sbjct: 14  SVCLINSSASCFFTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDR 73

Query: 77  SKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPRE 118
           SKGFGFVT+++ +EA+KA    N + L+G  IFVD AK ++
Sbjct: 74  SKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQ 114

BLAST of CmoCh07G010190 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-17
Identity = 53/126 (42.06%), Postives = 73/126 (57.94%), Query Frame = 0

Query: 8   RRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAK 67
           RR + G   SS +     +    SS+    KL++SGLS  TT++ L++ F  FG L+   
Sbjct: 48  RRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMN 107

Query: 68  VITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPR------EPRPP 127
           ++ D+   R KGF F+ Y T EEA KA +GM+ KFLDG VIFV+ AK R      +PR  
Sbjct: 108 MVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRRD 167

BLAST of CmoCh07G010190 vs. TAIR 10
Match: AT1G18630.1 (glycine-rich RNA-binding protein 6 )

HSP 1 Score: 83.2 bits (204), Expect = 1.9e-16
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 0

Query: 33  TLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAE 92
           +LT  K+F+ GLS  T  E L+EAF SFG++V+A V+ DR +G S+GFGFVTY +IE A 
Sbjct: 32  SLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVAN 91

Query: 93  KAREGMNAKFLDGWVIFVDPA 114
            A + M  K LDG +I V PA
Sbjct: 92  NAMQAMQNKELDGRIIGVHPA 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FIU61.5e-2155.43Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana... [more]
Q9FFZ61.1e-1645.54Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S... [more]
Q9FX451.9e-1642.06Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana... [more]
Q9FZ842.7e-1553.09Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
Q990706.0e-1550.63Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1HDN17.0e-75100.00organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita moschata O... [more]
A0A6J1I6S82.5e-7298.63organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita maxima OX=... [more]
A0A6J1CQ598.5e-6591.16organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia ... [more]
A0A1S3BHV31.4e-6288.44glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC... [more]
A0A2I4DKH77.2e-5677.24organelle RRM domain-containing protein 2, mitochondrial OS=Juglans regia OX=512... [more]
Match NameE-valueIdentityDescription
XP_022962832.11.4e-74100.00organelle RRM domain-containing protein 2, mitochondrial [Cucurbita moschata] >K... [more]
XP_023517167.12.1e-7399.31organelle RRM domain-containing protein 2, mitochondrial [Cucurbita pepo subsp. ... [more]
XP_022972736.15.1e-7298.63organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima][more]
XP_022143719.11.8e-6491.16organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia][more]
XP_031739912.14.3e-6389.19organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KAE8... [more]
Match NameE-valueIdentityDescription
AT2G37510.12.2e-4969.44RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G54580.11.0e-2255.43RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G06210.17.7e-1845.54RNA binding (RRM/RBD/RNP motifs) family protein [more]
AT1G73530.11.3e-1742.06RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G18630.11.9e-1653.09glycine-rich RNA-binding protein 6 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 38..111
e-value: 2.9E-25
score: 100.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 39..105
e-value: 1.9E-19
score: 69.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 37..115
score: 18.256838
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 29..140
e-value: 3.6E-27
score: 97.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..134
NoneNo IPR availablePANTHERPTHR15241TRANSFORMER-2-RELATEDcoord: 1..145
NoneNo IPR availablePANTHERPTHR15241:SF282GLYCINE-RICH RNA-BINDING PROTEIN 6, MITOCHONDRIALcoord: 1..145
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 36..127

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G010190.1CmoCh07G010190.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding