CmoCh07G008640 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh07G008640
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr07: 4086835 .. 4089179 (-)
RNA-Seq ExpressionCmoCh07G008640
SyntenyCmoCh07G008640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGCTGCAATCTTCTGTGACAAGAAGCCAAAGTCTTCTGCTCCCATGGTCCATGGAAGGAGTTGCACATTGGATTCTCCAAGTAAGCTATTTCCTACCCTATTTGCATGCTCAAACAATGCTACATTGTTAACCATTACTGGTGTATCCTCCATAAACTCCACTGAAGCATAACAATGGTGCACTACTGCTTGTGTGTTGATGACCTGTTGAAAAGAAATTAAGTTTTTCCCAGCTTCAAAAGTAATATAGGAATTTGTTTAAGTTCATTAAGTGTAATGCATGTTATACCTCTCTGATCCTTTCCTTAAGGTAAGAGAGACCCTTAGGAGACAAGCTCCTAAAAGTTCCTCCAACTTTCACGGTTTCGGGAACGACATTATCTGCTTGCCCTCCATCAACAAATGCAACAGTCACCACCTACATTGCTGAGTATTAGTTAACTACGACCATGTTTGCAAGTTTCCTTGCTATGCATTACCTTTAAGTGTTGAATCTTGATGAGCAGTTAATAATTTTCTCATGTTATTCTGTTCTTATGATCCTAACAAACGGAGAAGATTAGGGACTTCGTTTAGAAGGCGCAAAACTTACTCCAGCCTCGAGAGGATCGGTTTCACGAGATACAATTTGTTGAAGAGCTTGAATTATAAAAGCTGTTGCTAGAACTGGGTCCTTCGTCTTATGTGGGGCTGCAGCATGTCCACCCTTTCCTCGTATCAAGGCCGAAAAGTGTCCTGCTCCCGCACATACTGGACCAGGCCTCGAGGCTATGACACCGGTTGGTAAGGTGGGCAAGACGTGCAATGCAAAGATTCCATCTATATCGTCAAGGGCATCTTCTTGTAGCAATTGATAAGCTCCATTACACTCTTCTCCTGGCTGGAAAACTAACTTCACAGTTCCCTTCAAATAACAACATATACAAGTAATCCTGGTCAGTCCCCTTCCCAGGTAACAGAATCGCACAAATAGGATTTACAATTCTAAGTATGAAAATTTTTACCTTCAGTTTCTCTATTTTACTCTGTAATAACCTTGCTGCTCCTAATAGCATAGCAACATGTGAATCATGGCCACAGGCATGCATTTTACCTTCTACCTTGCTTTTGAATTCCCATTCTACCAGTTCCTTCAAAATTATATGAGACATATTTAGCTTGGAGAATCTGAACTATTCATCAATTTGCACTCCTATTCTACCGTGGCATGATCTTCTCTATTGATGACAACAATTTGCAGGGTTGAATTTTAGTTTTGCAAAAGGTAAATACCAGCACAAGCCTACCGCTAGTAGATATTGTCCTCTTTGGATTTTTTCTTTCGGGCTTCCCCTCAAGGCTTTTAAAACGTATCTATTAGGGAGAGGTTTCCACACCCTTATAAAGAATGCTTTGTTCCCTTCTCCAACCGATTTGGGATCTCACAATCCACCCCCTTTGAGGTCCAGCGTCCTTGCTGGCACATCATTCGGTGTCTGGCTCTGATACCATTTGTAATAGCCCAAACCCATCACTAACCGATATGGTCCTCTTTGGGGTTTTCCTTCCAGGCTTTCTTTCAAGGTTTTTAATACGGCGTCTATTAGGGAGAGATTTCCACGTCTTTATAAAGAATGTTTCGTTCTCCTCTCCAATCAATGTGGAATCTCACAGATTATCAGACCTTAGAGCAAGGATAGAAAGCAATAAGGTTAGTTGAAGCAGTTTCTTGATATGCTATTCTGATATGGATATGTATGAAGCCTATCTCAGTTTTAGTAGCAAAATATAAATCTTTTTAGAGTCAAATGTCTTTTGCTTGCTCTACATTTTCCCAAGTTACTTTTGACAAATTACTTTCTTCCATTGTATTTGATCTGTATGCCATTCTCTGGTTTCATCTTTGTTTATAGAGAGAGTACCTGAAGAGGAAGGGCATCCATGTCTGCTCTAAGAGCAAAAACAGGTCTAGATGAAGAAGAAGAAGAAGAAGAAGAAGCCCCTTTAATGGAAGCCACCACTCCAGTCTTGGCAACAGGCCATTGGTAACTGATGCCGAGCAAGTCGAGCTCAGACCTCACGAGTTGACTCGTTCTGTACTCTTCAAATCCCACCTCTGGATACTCATGAATTCTCCTTCTAACTCCTTTTATCCACTCCAGGAACTCCCCTTCCCTTGCCAAACCCAATAACTTCCGTGTCAGTGAGTGTAGCTCCAACCCATCTCCACCGTGCTCCACCTCCGACGCCGACGGCCGCCACAACGCCACTCCAAAAACAAGCATCCAACAAAACAACTTGAACTCCATGCCGCCGCCGCCGCCGCCTGCCATCTCAAAAACAAATGCTTCCAATGGGTAA

mRNA sequence

ATGGTGGCTGCAATCTTCTGTGACAAGAAGCCAAAGTCTTCTGCTCCCATGGTCCATGGAAGGAGTTGCACATTGGATTCTCCAACTGTTGCTAGAACTGGGTCCTTCGTCTTATGTGGGGCTGCAGCATGTCCACCCTTTCCTCGTATCAAGGCCGAAAAGTGTCCTGCTCCCGCACATACTGGACCAGGCCTCGAGGCTATGACACCGAGAGAGTACCTGAAGAGGAAGGGCATCCATGTCTGCTCTAAGAGCAAAAACAGGAACTCCCCTTCCCTTGCCAAACCCAATAACTTCCGTGTCAGTGAGTGTAGCTCCAACCCATCTCCACCGTGCTCCACCTCCGACGCCGACGGCCGCCACAACGCCACTCCAAAAACAAGCATCCAACAAAACAACTTGAACTCCATGCCGCCGCCGCCGCCGCCTGCCATCTCAAAAACAAATGCTTCCAATGGGTAA

Coding sequence (CDS)

ATGGTGGCTGCAATCTTCTGTGACAAGAAGCCAAAGTCTTCTGCTCCCATGGTCCATGGAAGGAGTTGCACATTGGATTCTCCAACTGTTGCTAGAACTGGGTCCTTCGTCTTATGTGGGGCTGCAGCATGTCCACCCTTTCCTCGTATCAAGGCCGAAAAGTGTCCTGCTCCCGCACATACTGGACCAGGCCTCGAGGCTATGACACCGAGAGAGTACCTGAAGAGGAAGGGCATCCATGTCTGCTCTAAGAGCAAAAACAGGAACTCCCCTTCCCTTGCCAAACCCAATAACTTCCGTGTCAGTGAGTGTAGCTCCAACCCATCTCCACCGTGCTCCACCTCCGACGCCGACGGCCGCCACAACGCCACTCCAAAAACAAGCATCCAACAAAACAACTTGAACTCCATGCCGCCGCCGCCGCCGCCTGCCATCTCAAAAACAAATGCTTCCAATGGGTAA

Protein sequence

MVAAIFCDKKPKSSAPMVHGRSCTLDSPTVARTGSFVLCGAAACPPFPRIKAEKCPAPAHTGPGLEAMTPREYLKRKGIHVCSKSKNRNSPSLAKPNNFRVSECSSNPSPPCSTSDADGRHNATPKTSIQQNNLNSMPPPPPPAISKTNASNG
Homology
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BLAST of CmoCh07G008640 vs. NCBI nr
Match: KAG7027179.1 (hypothetical protein SDJN02_11190, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 259.6 bits (662), Expect = 1.7e-65
Identity = 148/226 (65.49%), Postives = 151/226 (66.81%), Query Frame = 0 

Query: 1   MVAAIFCDKKPKSSAPMVHGRSCTLDSPTVARTGSFVLCGAAACPPFPRIKAEKCPAPAH 60
           MVAAIFCDKKPKSSAPMVHGRSCTLDSPTVARTGSFVLCGAAACPPFPRIKAEKCPAPAH
Sbjct: 1   MVAAIFCDKKPKSSAPMVHGRSCTLDSPTVARTGSFVLCGAAACPPFPRIKAEKCPAPAH 60

Query: 61  TGPGLEAMTP---------------------------REYLKRKGIHVCSKSKNR----- 120
           TGPGLEAMTP                           +EYLKRKGIHVCSKSKNR     
Sbjct: 61  TGPGLEAMTPVAIDKLHYTLLLAGKLTSQFPSNNNIYKEYLKRKGIHVCSKSKNRSRRRR 120

Query: 121 -----------------------------------------NSPSLAKPNNFRVSECSSN 154
                                                    NSPSLAKP+NF VSECSSN
Sbjct: 121 RRRRRRRRRRSSSPFNGSHHSSLGNRPLVTDAEQVELRPHENSPSLAKPSNFLVSECSSN 180

The following BLAST results are available for this feature:
BLAST of CmoCh07G008640 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh07G008640 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh07G008640 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027179.11.7e-6565.49hypothetical protein SDJN02_11190, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh07G008640 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..153
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G008640.1CmoCh07G008640.1mRNA