CmoCh06G015900 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G015900
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr06: 11150041 .. 11150292 (-)
RNA-Seq ExpressionCmoCh06G015900
SyntenyCmoCh06G015900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGGAAGATCAAAGTCCATGAAATGCTTCTCAATTTGCAGCATCTTTAAGAGCTGTTGCTTTTCAAAGGGTGGAAGAGATGAAGGGTATTGGGATGAAAGTGGTGAGATTAGGCGTAGGATGTGGCCTAGTGATGAAGATACAAGATGGGTGGCTGAGCCTGGGATTGATCGGAAAGCTTCTGCTTTTATTGCTAGATTCTATGACGCTCGTGTTTCTGATCCCGAACGACAAACGCTTGCTGTTTAG

mRNA sequence

ATGGGGGGAAGATCAAAGTCCATGAAATGCTTCTCAATTTGCAGCATCTTTAAGAGCTGTTGCTTTTCAAAGGGTGGAAGAGATGAAGGGTATTGGGATGAAAGTGGTGAGATTAGGCGTAGGATGTGGCCTAGTGATGAAGATACAAGATGGGTGGCTGAGCCTGGGATTGATCGGAAAGCTTCTGCTTTTATTGCTAGATTCTATGACGCTCGTGTTTCTGATCCCGAACGACAAACGCTTGCTGTTTAG

Coding sequence (CDS)

ATGGGGGGAAGATCAAAGTCCATGAAATGCTTCTCAATTTGCAGCATCTTTAAGAGCTGTTGCTTTTCAAAGGGTGGAAGAGATGAAGGGTATTGGGATGAAAGTGGTGAGATTAGGCGTAGGATGTGGCCTAGTGATGAAGATACAAGATGGGTGGCTGAGCCTGGGATTGATCGGAAAGCTTCTGCTTTTATTGCTAGATTCTATGACGCTCGTGTTTCTGATCCCGAACGACAAACGCTTGCTGTTTAG

Protein sequence

MGGRSKSMKCFSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDTRWVAEPGIDRKASAFIARFYDARVSDPERQTLAV
Homology
BLAST of CmoCh06G015900 vs. ExPASy TrEMBL
Match: A0A6J1FBH6 (uncharacterized protein LOC111442555 OS=Cucurbita moschata OX=3662 GN=LOC111442555 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 7.6e-42
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1  MGGRSKSMKCFSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDTRWVAEPGIDRK 60
          MGGRSKSMKCFSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDTRWVAEPGIDRK
Sbjct: 1  MGGRSKSMKCFSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDTRWVAEPGIDRK 60

Query: 61 ASAFIARFYDARVSDPERQTLAV 84
          ASAFIARFYDARVSDPERQTLAV
Sbjct: 61 ASAFIARFYDARVSDPERQTLAV 83

BLAST of CmoCh06G015900 vs. ExPASy TrEMBL
Match: A0A6J1C955 (uncharacterized protein LOC111009454 OS=Momordica charantia OX=3673 GN=LOC111009454 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.9e-31
Identity = 72/87 (82.76%), Postives = 74/87 (85.06%), Query Frame = 0

Query: 1  MGGRSKSMKCFSICSIFKSCCFSKGGR---DEGYWDESGEIRRRMWPSDEDT-RWVAEPG 60
          MGGR KS KCFSICSI KSCCF  GGR   D GYWDES EIRRRMWPSDED  RWVAEPG
Sbjct: 1  MGGR-KSSKCFSICSILKSCCFPMGGRSSEDGGYWDESAEIRRRMWPSDEDRGRWVAEPG 60

Query: 61 IDRKASAFIARFYDARVSDPERQTLAV 84
          IDRKASAFIARFY+ARVSDP+RQT AV
Sbjct: 61 IDRKASAFIARFYEARVSDPQRQTFAV 86

BLAST of CmoCh06G015900 vs. ExPASy TrEMBL
Match: A0A7J6DWM0 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_014999 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.3e-19
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 0

Query: 2  GGRSKSMKCFSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDT-RWVAEPGIDRK 61
          G  S S   FS+CS+F S CFS G RD+ Y +E   IRRR+ PS+ED   W+AEPGIDRK
Sbjct: 5  GKSSSSSSLFSLCSLF-SACFSSGNRDDTYSEEGVYIRRRICPSEEDRGGWIAEPGIDRK 64

Query: 62 ASAFIARFYDARVSDPERQTL 82
          ASAFIARFY++RVSDPERQTL
Sbjct: 65 ASAFIARFYESRVSDPERQTL 84

BLAST of CmoCh06G015900 vs. ExPASy TrEMBL
Match: A0A803Q4L5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.3e-19
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 0

Query: 2  GGRSKSMKCFSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDT-RWVAEPGIDRK 61
          G  S S   FS+CS+F S CFS G RD+ Y +E   IRRR+ PS+ED   W+AEPGIDRK
Sbjct: 5  GKSSSSSSLFSLCSLF-SACFSSGNRDDTYSEEGVYIRRRICPSEEDRGGWIAEPGIDRK 64

Query: 62 ASAFIARFYDARVSDPERQTL 82
          ASAFIARFY++RVSDPERQTL
Sbjct: 65 ASAFIARFYESRVSDPERQTL 84

BLAST of CmoCh06G015900 vs. ExPASy TrEMBL
Match: A0A6P6FMC7 (uncharacterized protein LOC112488971 OS=Ziziphus jujuba OX=326968 GN=LOC112488971 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-18
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 0

Query: 3  GRSKSMKCFSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDT-RWVAEPGIDRKA 62
          G+ KS   FS C+IFK+ CFS G  ++ Y +E   IRRR++ SDED   W AEPGIDRKA
Sbjct: 2  GKGKSASLFSFCNIFKA-CFSSGSNEDAYSEEGYYIRRRIYASDEDRGGWTAEPGIDRKA 61

Query: 63 SAFIARFYDARVSDPERQTLAV 84
          SAFIARFY++RVSD ERQTLAV
Sbjct: 62 SAFIARFYESRVSDSERQTLAV 82

BLAST of CmoCh06G015900 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 77.4 bits (189), Expect = 6.0e-15
Identity = 49/85 (57.65%), Postives = 58/85 (68.24%), Query Frame = 0

Query: 1  MGG--RSKSMKCFSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDTR-WVAEPGI 60
          MGG  RS S K FS+ S FK+    +   D G WD+ G  R+ M  SDED R WVAEPGI
Sbjct: 1  MGGKNRSHSSKRFSLFSFFKTRRSHRVEAD-GSWDDFGYTRKAM-ASDEDKRYWVAEPGI 60

Query: 61 DRKASAFIARFYDARVSDPERQTLA 83
          DRKASAFIA+F+  RVS+ ERQTL+
Sbjct: 61 DRKASAFIAKFHATRVSESERQTLS 83

BLAST of CmoCh06G015900 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-11
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 0

Query: 40 RRMWPSDEDTR-WVAEPGIDRKASAFIARFYDARVSDPERQTL 82
          R+ W SDED R WVAEPGIDRKASAFIA+F+ +RVS+ ERQTL
Sbjct: 24 RKAWASDEDKRYWVAEPGIDRKASAFIAKFHASRVSESERQTL 66

BLAST of CmoCh06G015900 vs. TAIR 10
Match: AT1G48325.1 (Expressed protein )

HSP 1 Score: 50.8 bits (120), Expect = 6.0e-07
Identity = 30/81 (37.04%), Postives = 49/81 (60.49%), Query Frame = 0

Query: 1  MGGRSKSMKCFSICSIFKSCCFSKGGRDEGYWDESG--EIRRRMWPSDED-TRW-VAEPG 60
          MGG  +  K  S  S+ KS  F++  +++  W+E     +R R+  +D+D   W +AEP 
Sbjct: 3  MGGHGRRRKSSSSFSVVKS-LFARCSKEKDNWNEERMINVRPRIMTTDDDGCSWTIAEPC 62

Query: 61 IDRKASAFIARFYDARVSDPE 78
          IDR+A+AFIA+F++  + D E
Sbjct: 63 IDRRATAFIAKFHETPIQDTE 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FBH67.6e-42100.00uncharacterized protein LOC111442555 OS=Cucurbita moschata OX=3662 GN=LOC1114425... [more]
A0A6J1C9557.9e-3182.76uncharacterized protein LOC111009454 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A7J6DWM05.3e-1965.43Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_014999 PE=4 SV=1[more]
A0A803Q4L55.3e-1965.43Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A6P6FMC72.0e-1863.41uncharacterized protein LOC112488971 OS=Ziziphus jujuba OX=326968 GN=LOC11248897... [more]
Match NameE-valueIdentityDescription
AT3G05858.16.0e-1557.65unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G26620.11.4e-1174.42unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G48325.16.0e-0737.04Expressed protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33511OS06G0632400 PROTEINcoord: 2..83
NoneNo IPR availablePANTHERPTHR33511:SF23SUBFAMILY NOT NAMEDcoord: 2..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G015900.1CmoCh06G015900.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006897 endocytosis