CmoCh06G015890 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G015890
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionSsrA-binding protein
LocationCmo_Chr06: 11142705 .. 11143340 (-)
RNA-Seq ExpressionCmoCh06G015890
SyntenyCmoCh06G015890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTTGGAAGAAAACCATAACTTCTCCTATTAGAAAGGCTTGCACAATCTTCAACCAACACCCGAGAGACTCGAAGAAGTCCCACTCCGACTCCGACTCAGGTGAGCTCTCGGGTTTTCTTTTGAATTTTCAACGACGGAGCAAAAAACAAAGAAAACGGTCTTATTTTAAGTTTCTTTTGTAGAGCAAGAGAAGCGAGTAGACGTGAGAGACCTGCAAGGAGAGGTGATGGCATGTGGGTATGAAGACGTGCAAGTTATGTGGTCTATTTTAGACAAGACTAACTCTACTACTACCGCCGCCGCCGCCACCACCTCCACCGTCTATAATGTGTCTTCTTAATCATCGTCGTGGTGGTCGCCGTTGTCTCGGCCGTGGCCAAAAGATTGTAGATAACTCTTTTTCTCTATTTCTCAATCAGTTATGATTTCGTTTTGTTTATAGGGAAGGAATGAATCCCCATGATTTGAAGAAGCTCTTAATCATGGTGAGACTTATTACTCTTAGTTAATGTAAAAATGAAATCTCTTTCCTCGTGGGAAATGGAACCTCATCTTTCTCGGTATTTTGATTTAGAGAGATAATTTTTTAAATTAGATACCAATTTTGTTACCAATAATTTCAAATAGAA

mRNA sequence

ATGGCTTCTTGGAAGAAAACCATAACTTCTCCTATTAGAAAGGCTTGCACAATCTTCAACCAACACCCGAGAGACTCGAAGAAGTCCCACTCCGACTCCGACTCAGGTGAGCTCTCGGAGCAAGAGAAGCGAGTAGACGTGAGAGACCTGCAAGGAGAGGTGATGGCATGTGGGTATGAAGACGTGCAAGTTATGTGGTCTATTTTAGACAAGACTAACTCTACTACTACCGCCGCCGCCGCCACCACCTCCACCGTCTATAATGTGTCTTCTTAATCATCGTCGTGGTGGTCGCCGTTGTCTCGGCCGTGGCCAAAAGATTGTAGATAACTCTTTTTCTCTATTTCTCAATCAGTTATGATTTCGTTTTGTTTATAGGGAAGGAATGAATCCCCATGATTTGAAGAAGCTCTTAATCATGGTGAGACTTATTACTCTTAGTTAATGTAAAAATGAAATCTCTTTCCTCGTGGGAAATGGAACCTCATCTTTCTCGGTATTTTGATTTAGAGAGATAATTTTTTAAATTAGATACCAATTTTGTTACCAATAATTTCAAATAGAA

Coding sequence (CDS)

ATGGCTTCTTGGAAGAAAACCATAACTTCTCCTATTAGAAAGGCTTGCACAATCTTCAACCAACACCCGAGAGACTCGAAGAAGTCCCACTCCGACTCCGACTCAGGTGAGCTCTCGGAGCAAGAGAAGCGAGTAGACGTGAGAGACCTGCAAGGAGAGGTGATGGCATGTGGGTATGAAGACGTGCAAGTTATGTGGTCTATTTTAGACAAGACTAACTCTACTACTACCGCCGCCGCCGCCACCACCTCCACCGTCTATAATGTGTCTTCTTAA

Protein sequence

MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTTAAAATTSTVYNVSS
Homology
BLAST of CmoCh06G015890 vs. ExPASy TrEMBL
Match: A0A6J1F683 (uncharacterized protein LOC111442547 OS=Cucurbita moschata OX=3662 GN=LOC111442547 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.1e-37
Identity = 87/91 (95.60%), Postives = 87/91 (95.60%), Query Frame = 0

Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYE 60
          MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSD    SEQEKRVDVRDLQGEVMACGYE
Sbjct: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSD----SEQEKRVDVRDLQGEVMACGYE 60

Query: 61 DVQVMWSILDKTNSTTTAAAATTSTVYNVSS 92
          DVQVMWSILDKTNSTTTAAAATTSTVYNVSS
Sbjct: 61 DVQVMWSILDKTNSTTTAAAATTSTVYNVSS 87

BLAST of CmoCh06G015890 vs. ExPASy TrEMBL
Match: A0A6J1IUX8 (uncharacterized protein LOC111479526 OS=Cucurbita maxima OX=3661 GN=LOC111479526 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.9e-26
Identity = 71/91 (78.02%), Postives = 72/91 (79.12%), Query Frame = 0

Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYE 60
          MASWKKTI SP RKACTIFNQHPRD KKS SD      SEQEKRVDVR+LQGEVMACGYE
Sbjct: 1  MASWKKTIISPFRKACTIFNQHPRDPKKSPSD------SEQEKRVDVRNLQGEVMACGYE 60

Query: 61 DVQVMWSILDKTNSTTTAAAATTSTVYNVSS 92
          DV VMWSILDK NSTTTAA     T  NVSS
Sbjct: 61 DVHVMWSILDKANSTTTAA-----TACNVSS 80

BLAST of CmoCh06G015890 vs. ExPASy TrEMBL
Match: A0A6J1CC51 (uncharacterized protein LOC111009357 OS=Momordica charantia OX=3673 GN=LOC111009357 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 9.2e-25
Identity = 69/91 (75.82%), Postives = 69/91 (75.82%), Query Frame = 0

Query: 1   MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYE 60
           MASWKKTI SP RKACTIFNQ PRD KKSHSD      SEQEKRVDVRDLQGEVMACGYE
Sbjct: 58  MASWKKTIISPFRKACTIFNQQPRDPKKSHSD------SEQEKRVDVRDLQGEVMACGYE 117

Query: 61  DVQVMWSILDKTNSTTTAAAATTSTVYNVSS 92
           DV VMWSILDK NS   A AA      NVSS
Sbjct: 118 DVHVMWSILDKANSGAAATAAC-----NVSS 137

BLAST of CmoCh06G015890 vs. ExPASy TrEMBL
Match: A0A5A7U9W0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold60158G00010 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.8e-24
Identity = 69/92 (75.00%), Postives = 71/92 (77.17%), Query Frame = 0

Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYE 60
          MASWKKTI SP RKACTIFNQ+PRD KKSHSD      SEQEKRVDVR+LQGEVMACGYE
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSD------SEQEKRVDVRNLQGEVMACGYE 60

Query: 61 DVQVMWSILD-KTNSTTTAAAATTSTVYNVSS 92
          DV VMWSILD K NS  T A AT     NVSS
Sbjct: 61 DVHVMWSILDHKANSAATTATATC----NVSS 82

BLAST of CmoCh06G015890 vs. ExPASy TrEMBL
Match: A0A1S3AXS6 (uncharacterized protein LOC103483930 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103483930 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.8e-24
Identity = 69/92 (75.00%), Postives = 71/92 (77.17%), Query Frame = 0

Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYE 60
          MASWKKTI SP RKACTIFNQ+PRD KKSHSD      SEQEKRVDVR+LQGEVMACGYE
Sbjct: 1  MASWKKTIISPFRKACTIFNQNPRDPKKSHSD------SEQEKRVDVRNLQGEVMACGYE 60

Query: 61 DVQVMWSILD-KTNSTTTAAAATTSTVYNVSS 92
          DV VMWSILD K NS  T A AT     NVSS
Sbjct: 61 DVHVMWSILDHKANSAATTATATC----NVSS 82

BLAST of CmoCh06G015890 vs. TAIR 10
Match: AT3G17580.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48330.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 82.8 bits (203), Expect = 1.6e-16
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 0

Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKS-HSDSDSGELSEQEKRVDVRDLQGEVMACGY 60
          MASWKKTI +P +KA T FNQ  +  KK      D+    E EKR+ V++LQGEVMACGY
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQSPKKGCRGRMDAQAREEHEKRM-VQELQGEVMACGY 60

Query: 61 EDVQVMWSILDKTNSTTTAAA 81
          +DV VMWSILDK+NS+   ++
Sbjct: 61 DDVLVMWSILDKSNSSNNLSS 80

BLAST of CmoCh06G015890 vs. TAIR 10
Match: AT1G48330.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17580.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.1 bits (196), Expect = 1.0e-15
Identity = 45/80 (56.25%), Postives = 61/80 (76.25%), Query Frame = 0

Query: 1  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYE 60
          MASWKKTI +P +KA T FNQ P+ + + H+++ + E  E EKR  V++LQG+VMACGYE
Sbjct: 1  MASWKKTIATPFKKAATFFNQ-PQQTNR-HANAKARE--EHEKRT-VQELQGDVMACGYE 60

Query: 61 DVQVMWSILDKTNSTTTAAA 81
          DV VMWSILDK+NS+   ++
Sbjct: 61 DVLVMWSILDKSNSSNNLSS 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1F6832.1e-3795.60uncharacterized protein LOC111442547 OS=Cucurbita moschata OX=3662 GN=LOC1114425... [more]
A0A6J1IUX84.9e-2678.02uncharacterized protein LOC111479526 OS=Cucurbita maxima OX=3661 GN=LOC111479526... [more]
A0A6J1CC519.2e-2575.82uncharacterized protein LOC111009357 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A5A7U9W07.8e-2475.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3AXS67.8e-2475.00uncharacterized protein LOC103483930 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
Match NameE-valueIdentityDescription
AT3G17580.11.6e-1655.56unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G48330.11.0e-1556.25unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..47
NoneNo IPR availablePANTHERPTHR33181OS01G0778500 PROTEINcoord: 1..81
NoneNo IPR availablePANTHERPTHR33181:SF10OS01G0288200 PROTEINcoord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G015890.1CmoCh06G015890.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane