CmoCh06G005050 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G005050
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionProtein GL2-INTERACTING REPRESSOR 1
LocationCmo_Chr06: 2426536 .. 2426898 (+)
RNA-Seq ExpressionCmoCh06G005050
SyntenyCmoCh06G005050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAGAAGAAGCAATGGAAGTGTTCCAAAGCTCGAATTGAAGCTGAATCTGTCACCACCACAGTCACATTCACTGATGTCATCACCAAGCCGATCGGCGACAGTGTCACCCACATCGCCACCAAGCTCTTGCGTGTCGTTGGAGCTAAACCAAGACGATGGTACCGCACTAAGATACTCCAGCAGTCCGGAAGCCACCTCAATGGTGCTGGTGGGGTGCCCTCGCTGTCTTATGTACGTAATGCTGTCGGAGAATGACCCCAAATGCCCGAAGTGCAAAAGCTCTGTTTTGCTGGATTTTCTCCATGATGGCGGCGCCACCGCACCTCCGCCATCCACGGCCGTCGCCCGGAAGATCTAG

mRNA sequence

ATGAGCAGAAGAAGCAATGGAAGTGTTCCAAAGCTCGAATTGAAGCTGAATCTGTCACCACCACAGTCACATTCACTGATGTCATCACCAAGCCGATCGGCGACAGTGTCACCCACATCGCCACCAAGCTCTTGCGTGTCGTTGGAGCTAAACCAAGACGATGGTACCGCACTAAGATACTCCAGCAGTCCGGAAGCCACCTCAATGGTGCTGGTGGGGTGCCCTCGCTGTCTTATGTACGTAATGCTGTCGGAGAATGACCCCAAATGCCCGAAGTGCAAAAGCTCTGTTTTGCTGGATTTTCTCCATGATGGCGGCGCCACCGCACCTCCGCCATCCACGGCCGTCGCCCGGAAGATCTAG

Coding sequence (CDS)

ATGAGCAGAAGAAGCAATGGAAGTGTTCCAAAGCTCGAATTGAAGCTGAATCTGTCACCACCACAGTCACATTCACTGATGTCATCACCAAGCCGATCGGCGACAGTGTCACCCACATCGCCACCAAGCTCTTGCGTGTCGTTGGAGCTAAACCAAGACGATGGTACCGCACTAAGATACTCCAGCAGTCCGGAAGCCACCTCAATGGTGCTGGTGGGGTGCCCTCGCTGTCTTATGTACGTAATGCTGTCGGAGAATGACCCCAAATGCCCGAAGTGCAAAAGCTCTGTTTTGCTGGATTTTCTCCATGATGGCGGCGCCACCGCACCTCCGCCATCCACGGCCGTCGCCCGGAAGATCTAG

Protein sequence

MSRRSNGSVPKLELKLNLSPPQSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTALRYSSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATAPPPSTAVARKI
Homology
BLAST of CmoCh06G005050 vs. ExPASy Swiss-Prot
Match: Q9FNI1 (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.3e-36
Identity = 83/119 (69.75%), Postives = 95/119 (79.83%), Query Frame = 0

Query: 1   MSRRSNGSVPKLELKLNLSPPQS--HSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTAL 60
           MSRRS    PKLELKLNLSPP S    ++ SPSRSAT SPTSPPSSCVS E+NQD+  ++
Sbjct: 1   MSRRS----PKLELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDE-PSV 60

Query: 61  RYSSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATAPPPSTAVA 118
           RYS+SPE TSMVLVGCPRCLMYVMLSE+DPKCPKCKS+VLLDFLH+    A   + A +
Sbjct: 61  RYSTSPETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNANANAAAAS 114

BLAST of CmoCh06G005050 vs. ExPASy Swiss-Prot
Match: Q9SRN4 (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.4e-25
Identity = 67/119 (56.30%), Postives = 80/119 (67.23%), Query Frame = 0

Query: 1   MSRRSNGSVPKLELKLNLSPPQSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTALRY 60
           MSRR N + PKLEL+LNLSPP S +   S  RS   S T+ PSSCVS E NQ++   +  
Sbjct: 1   MSRR-NKNGPKLELRLNLSPPPSQASQMSLVRSPNRSNTTSPSSCVSSETNQEENETI-- 60

Query: 61  SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATAPPPSTAVARK 120
                 TSMVLVGCPRCLMYVMLS++DPKCPKCKS+VLLDFL +    A   + A  R+
Sbjct: 61  ------TSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQENAFAATTATAANTRR 110

BLAST of CmoCh06G005050 vs. ExPASy Swiss-Prot
Match: Q9FMS4 (Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 GN=SIED1 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-10
Identity = 39/92 (42.39%), Postives = 51/92 (55.43%), Query Frame = 0

Query: 12  LELKLNLSPPQSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTALRYSSSPEATSMVL 71
           L+LKLN+SP    SL++  S S+  S  +                        EA SMV+
Sbjct: 11  LDLKLNISPSLDSSLLTESSSSSLCSEEAE-------------------GGGGEAKSMVV 70

Query: 72  VGCPRCLMYVMLS-ENDPKCPKCKSSVLLDFL 103
           VGCP C+MY++ S ENDP+CP+C S VLLDFL
Sbjct: 71  VGCPNCIMYIITSLENDPRCPRCNSHVLLDFL 83

BLAST of CmoCh06G005050 vs. ExPASy TrEMBL
Match: A0A6J1H2T2 (uncharacterized protein LOC111459550 OS=Cucurbita moschata OX=3662 GN=LOC111459550 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.0e-59
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0

Query: 1   MSRRSNGSVPKLELKLNLSPPQSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTALRY 60
           MSRRSNGSVPKLELKLNLSPPQSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTALRY
Sbjct: 1   MSRRSNGSVPKLELKLNLSPPQSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTALRY 60

Query: 61  SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATAPPPSTAVARKI 120
           SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATAPPPSTAVARKI
Sbjct: 61  SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATAPPPSTAVARKI 120

BLAST of CmoCh06G005050 vs. ExPASy TrEMBL
Match: A0A6J1KYB2 (uncharacterized protein LOC111498264 OS=Cucurbita maxima OX=3661 GN=LOC111498264 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.2e-58
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0

Query: 1   MSRRSNGSVPKLELKLNLSPPQSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTALRY 60
           MSRRSNGSVPKLELKLNLSPP+ HSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTALRY
Sbjct: 1   MSRRSNGSVPKLELKLNLSPPRPHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTALRY 60

Query: 61  SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATAPPPSTAVARKI 120
           SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATAPPPSTAVARKI
Sbjct: 61  SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATAPPPSTAVARKI 120

BLAST of CmoCh06G005050 vs. ExPASy TrEMBL
Match: A0A5A7TLW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold23737G00010 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.4e-49
Identity = 107/121 (88.43%), Postives = 112/121 (92.56%), Query Frame = 0

Query: 1   MSRRSNGSVPKLELKLNLSPPQSHSLMSSPSRSATVSPTSPPSSCVSLELNQDD-GTALR 60
           MSRRS+GSVPKLELKLNLSPP+ H L+SSPSRSATVSPTSPPSSCVS ELNQDD G ALR
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAALR 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATAPPPSTAVARK 120
           YSSSPEATSMVLVGCPRCLMYVMLSEN+PKCPKCKSSVLLDFLHDG A+A PPST  ARK
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASA-PPSTTAARK 120

BLAST of CmoCh06G005050 vs. ExPASy TrEMBL
Match: A0A1S3B7J8 (uncharacterized protein LOC103486655 OS=Cucumis melo OX=3656 GN=LOC103486655 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.4e-49
Identity = 107/121 (88.43%), Postives = 112/121 (92.56%), Query Frame = 0

Query: 1   MSRRSNGSVPKLELKLNLSPPQSHSLMSSPSRSATVSPTSPPSSCVSLELNQDD-GTALR 60
           MSRRS+GSVPKLELKLNLSPP+ H L+SSPSRSATVSPTSPPSSCVS ELNQDD G ALR
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAALR 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATAPPPSTAVARK 120
           YSSSPEATSMVLVGCPRCLMYVMLSEN+PKCPKCKSSVLLDFLHDG A+A PPST  ARK
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASA-PPSTTAARK 120

BLAST of CmoCh06G005050 vs. ExPASy TrEMBL
Match: A0A0A0LBI1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778340 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.2e-49
Identity = 107/121 (88.43%), Postives = 112/121 (92.56%), Query Frame = 0

Query: 1   MSRRSNGSVPKLELKLNLSPPQSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTA-LR 60
           MSRRS+GSVPKLELKLNLSPP+ H L+SSPSRSATVSPTSPPSSCVS ELNQDDG A LR
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAGLR 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATAPPPSTAVARK 120
           YSSSPEATSMVLVGCPRCLMYVMLSEN+PKCPKCKSSVLLDFLHDG A+A PPST  ARK
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASA-PPSTTAARK 120

BLAST of CmoCh06G005050 vs. TAIR 10
Match: AT5G06270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 152.9 bits (385), Expect = 1.6e-37
Identity = 83/119 (69.75%), Postives = 95/119 (79.83%), Query Frame = 0

Query: 1   MSRRSNGSVPKLELKLNLSPPQS--HSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTAL 60
           MSRRS    PKLELKLNLSPP S    ++ SPSRSAT SPTSPPSSCVS E+NQD+  ++
Sbjct: 1   MSRRS----PKLELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDE-PSV 60

Query: 61  RYSSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATAPPPSTAVA 118
           RYS+SPE TSMVLVGCPRCLMYVMLSE+DPKCPKCKS+VLLDFLH+    A   + A +
Sbjct: 61  RYSTSPETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNANANAAAAS 114

BLAST of CmoCh06G005050 vs. TAIR 10
Match: AT3G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 116.3 bits (290), Expect = 1.7e-26
Identity = 67/119 (56.30%), Postives = 80/119 (67.23%), Query Frame = 0

Query: 1   MSRRSNGSVPKLELKLNLSPPQSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTALRY 60
           MSRR N + PKLEL+LNLSPP S +   S  RS   S T+ PSSCVS E NQ++   +  
Sbjct: 1   MSRR-NKNGPKLELRLNLSPPPSQASQMSLVRSPNRSNTTSPSSCVSSETNQEENETI-- 60

Query: 61  SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATAPPPSTAVARK 120
                 TSMVLVGCPRCLMYVMLS++DPKCPKCKS+VLLDFL +    A   + A  R+
Sbjct: 61  ------TSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQENAFAATTATAANTRR 110

BLAST of CmoCh06G005050 vs. TAIR 10
Match: AT5G22270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 136 Blast hits to 136 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 2.0e-11
Identity = 39/92 (42.39%), Postives = 51/92 (55.43%), Query Frame = 0

Query: 12  LELKLNLSPPQSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTALRYSSSPEATSMVL 71
           L+LKLN+SP    SL++  S S+  S  +                        EA SMV+
Sbjct: 11  LDLKLNISPSLDSSLLTESSSSSLCSEEAE-------------------GGGGEAKSMVV 70

Query: 72  VGCPRCLMYVMLS-ENDPKCPKCKSSVLLDFL 103
           VGCP C+MY++ S ENDP+CP+C S VLLDFL
Sbjct: 71  VGCPNCIMYIITSLENDPRCPRCNSHVLLDFL 83

BLAST of CmoCh06G005050 vs. TAIR 10
Match: AT1G16500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79160.1); Has 136 Blast hits to 134 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 131; Viruses - 1; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 5.1e-07
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 0

Query: 52  QDDGTALRYSSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLL 100
           +DDG     +S+  A S V  GCP CL YV +++N+PKCP+C S V L
Sbjct: 198 EDDGVYDGTASATVAASQVAAGCPGCLSYVFVAKNNPKCPRCHSFVPL 245

BLAST of CmoCh06G005050 vs. TAIR 10
Match: AT3G52561.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 3.3e-06
Identity = 24/70 (34.29%), Postives = 39/70 (55.71%), Query Frame = 0

Query: 32  RSATVSPTSPPSSCVSLELNQDDGTALRYSSSPEATSMVLVGCPRCLMYVMLSENDPKCP 91
           RS +   +S  +SC++      +  A  +    EA  MV++GC  C+MYVM+ +   +CP
Sbjct: 30  RSPSSDTSSSQNSCLTRTEEVKEEVASSWVDEEEAPEMVVMGCRSCMMYVMVLQERQRCP 89

Query: 92  KCKSSVLLDF 102
           KCK + L+ F
Sbjct: 90  KCKCTDLIFF 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FNI12.3e-3669.75Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1... [more]
Q9SRN42.4e-2556.30Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1... [more]
Q9FMS42.8e-1042.39Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 G... [more]
Match NameE-valueIdentityDescription
A0A6J1H2T22.0e-59100.00uncharacterized protein LOC111459550 OS=Cucurbita moschata OX=3662 GN=LOC1114595... [more]
A0A6J1KYB22.2e-5898.33uncharacterized protein LOC111498264 OS=Cucurbita maxima OX=3661 GN=LOC111498264... [more]
A0A5A7TLW32.4e-4988.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B7J82.4e-4988.43uncharacterized protein LOC103486655 OS=Cucumis melo OX=3656 GN=LOC103486655 PE=... [more]
A0A0A0LBI14.2e-4988.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778340 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G06270.11.6e-3769.75unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G11600.11.7e-2656.30unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
AT5G22270.12.0e-1142.39unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G16500.15.1e-0747.92unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G52561.13.3e-0634.29unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..48
NoneNo IPR availablePANTHERPTHR33177:SF47BNAC02G02040D PROTEINcoord: 3..115
NoneNo IPR availablePANTHERPTHR33177PUTATIVE-RELATEDcoord: 3..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G005050.1CmoCh06G005050.1mRNA