CmoCh06G005050 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGCAGAAGAAGCAATGGAAGTGTTCCAAAGCTCGAATTGAAGCTGAATCTGTCACCACCACAGTCACATTCACTGATGTCATCACCAAGCCGATCGGCGACAGTGTCACCCACATCGCCACCAAGCTCTTGCGTGTCGTTGGAGCTAAACCAAGACGATGGTACCGCACTAAGATACTCCAGCAGTCCGGAAGCCACCTCAATGGTGCTGGTGGGGTGCCCTCGCTGTCTTATGTACGTAATGCTGTCGGAGAATGACCCCAAATGCCCGAAGTGCAAAAGCTCTGTTTTGCTGGATTTTCTCCATGATGGCGGCGCCACCGCACCTCCGCCATCCACGGCCGTCGCCCGGAAGATCTAG ATGAGCAGAAGAAGCAATGGAAGTGTTCCAAAGCTCGAATTGAAGCTGAATCTGTCACCACCACAGTCACATTCACTGATGTCATCACCAAGCCGATCGGCGACAGTGTCACCCACATCGCCACCAAGCTCTTGCGTGTCGTTGGAGCTAAACCAAGACGATGGTACCGCACTAAGATACTCCAGCAGTCCGGAAGCCACCTCAATGGTGCTGGTGGGGTGCCCTCGCTGTCTTATGTACGTAATGCTGTCGGAGAATGACCCCAAATGCCCGAAGTGCAAAAGCTCTGTTTTGCTGGATTTTCTCCATGATGGCGGCGCCACCGCACCTCCGCCATCCACGGCCGTCGCCCGGAAGATCTAG ATGAGCAGAAGAAGCAATGGAAGTGTTCCAAAGCTCGAATTGAAGCTGAATCTGTCACCACCACAGTCACATTCACTGATGTCATCACCAAGCCGATCGGCGACAGTGTCACCCACATCGCCACCAAGCTCTTGCGTGTCGTTGGAGCTAAACCAAGACGATGGTACCGCACTAAGATACTCCAGCAGTCCGGAAGCCACCTCAATGGTGCTGGTGGGGTGCCCTCGCTGTCTTATGTACGTAATGCTGTCGGAGAATGACCCCAAATGCCCGAAGTGCAAAAGCTCTGTTTTGCTGGATTTTCTCCATGATGGCGGCGCCACCGCACCTCCGCCATCCACGGCCGTCGCCCGGAAGATCTAG MSRRSNGSVPKLELKLNLSPPQSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTALRYSSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATAPPPSTAVARKI Homology
BLAST of CmoCh06G005050 vs. ExPASy Swiss-Prot
Match: Q9FNI1 (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 2.3e-36 Identity = 83/119 (69.75%), Postives = 95/119 (79.83%), Query Frame = 0
BLAST of CmoCh06G005050 vs. ExPASy Swiss-Prot
Match: Q9SRN4 (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 2.4e-25 Identity = 67/119 (56.30%), Postives = 80/119 (67.23%), Query Frame = 0
BLAST of CmoCh06G005050 vs. ExPASy Swiss-Prot
Match: Q9FMS4 (Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 GN=SIED1 PE=1 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 2.8e-10 Identity = 39/92 (42.39%), Postives = 51/92 (55.43%), Query Frame = 0
BLAST of CmoCh06G005050 vs. ExPASy TrEMBL
Match: A0A6J1H2T2 (uncharacterized protein LOC111459550 OS=Cucurbita moschata OX=3662 GN=LOC111459550 PE=4 SV=1) HSP 1 Score: 238.0 bits (606), Expect = 2.0e-59 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
BLAST of CmoCh06G005050 vs. ExPASy TrEMBL
Match: A0A6J1KYB2 (uncharacterized protein LOC111498264 OS=Cucurbita maxima OX=3661 GN=LOC111498264 PE=4 SV=1) HSP 1 Score: 234.6 bits (597), Expect = 2.2e-58 Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0
BLAST of CmoCh06G005050 vs. ExPASy TrEMBL
Match: A0A5A7TLW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold23737G00010 PE=4 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 2.4e-49 Identity = 107/121 (88.43%), Postives = 112/121 (92.56%), Query Frame = 0
BLAST of CmoCh06G005050 vs. ExPASy TrEMBL
Match: A0A1S3B7J8 (uncharacterized protein LOC103486655 OS=Cucumis melo OX=3656 GN=LOC103486655 PE=4 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 2.4e-49 Identity = 107/121 (88.43%), Postives = 112/121 (92.56%), Query Frame = 0
BLAST of CmoCh06G005050 vs. ExPASy TrEMBL
Match: A0A0A0LBI1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778340 PE=4 SV=1) HSP 1 Score: 203.8 bits (517), Expect = 4.2e-49 Identity = 107/121 (88.43%), Postives = 112/121 (92.56%), Query Frame = 0
BLAST of CmoCh06G005050 vs. TAIR 10
Match: AT5G06270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 152.9 bits (385), Expect = 1.6e-37 Identity = 83/119 (69.75%), Postives = 95/119 (79.83%), Query Frame = 0
BLAST of CmoCh06G005050 vs. TAIR 10
Match: AT3G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 116.3 bits (290), Expect = 1.7e-26 Identity = 67/119 (56.30%), Postives = 80/119 (67.23%), Query Frame = 0
BLAST of CmoCh06G005050 vs. TAIR 10
Match: AT5G22270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 136 Blast hits to 136 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 66.2 bits (160), Expect = 2.0e-11 Identity = 39/92 (42.39%), Postives = 51/92 (55.43%), Query Frame = 0
BLAST of CmoCh06G005050 vs. TAIR 10
Match: AT1G16500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79160.1); Has 136 Blast hits to 134 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 131; Viruses - 1; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 51.6 bits (122), Expect = 5.1e-07 Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 0
BLAST of CmoCh06G005050 vs. TAIR 10
Match: AT3G52561.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 48.9 bits (115), Expect = 3.3e-06 Identity = 24/70 (34.29%), Postives = 39/70 (55.71%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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