CmoCh06G000920 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G000920
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionPlastid-lipid associated protein PAP / fibrillin family protein
LocationCmo_Chr06: 543704 .. 544728 (-)
RNA-Seq ExpressionCmoCh06G000920
SyntenyCmoCh06G000920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAATTCCGCCATTTTTCCAGCCTTTCCGATCAACGTTTACTCAAAACGTGAAGCAAATGAAATGAGCAAATAGCGAAGGAAAATTCTTCGCAGTTCCAAAGTAGCCAAGCTGGGCGAAGAAAAATGGCGGGAAATCCAAAATCCTTTTGAGGAAATGAACAGCGATCTAAGAAATAGAAGAGGCAAAGAGGTACCGATAGATCATAGGGACATTGCTTGCGCTGGAGAATCTTCTGTGAGTCGATTTCCATGGCGAGGAAGAGAACGAACAGAGCACAAGAATTTTACTCTTCGAATCTCAATTGGTGAGGAGGTTATTGTTCTGCTGCTTATAAATTGGCGCAATTTTCAGCCATTTTAATTGTCTAATAAAATTAATTAGAAAATTAATATTACAAAAATTAATTAGAAAATTCTTTGTTTTAATTCCTTTTTCCTTCTCTGAGAAAAGAAACAAATAAACTATTTTAATATATATATATAATCTGCAGAGAGACGCGCGTTCGGCAATTCATTGGCCCAGGCGACACTCTCCGTTGGAGAAATAAGGCCGCAGATTTCTCTCCCATCGCCTCTACACTCTTCTCTTCCTTCAGTCTCTTCGATTCGTCCCGTCCTTCACCGTCGGTTTCTCCCAACTGCGCAGCTTCCTTGGTTTCTGACTCCGGACTGCATTCCACTGGACGCAGACGGATTTGTATAGCTATGGTTCAGCAGGCAGCCCAAGGAGCTCCGGCGATTTATGCTAAGGAGATGGAGAGACTCTCTGCTAAGGAATCGCTGCTGTTGGCTGTGAGTATCGGTGTTTGAGTTTCTTAATGTTTTAAAGTATTGTTGATTTGTTTCGCTTCAACGATCGCGATGATAGTAGAGCATAGTATAGACCGAGAATTATGTATGTATATCGATGATTTTTGTGTTTTGATGTTCATGTTCCTTTACTCCGTGAATTATACGTTTCGTAGTGAAAATTGAAAACATGCTTGATTTAATCGTGTTTTGTTGTCGACAAGCTACTTCGTGT

mRNA sequence

CCAATTCCGCCATTTTTCCAGCCTTTCCGATCAACGTTTACTCAAAACGTGAAGCAAATGAAATGAGCAAATAGCGAAGGAAAATTCTTCGCAGTTCCAAAGTAGCCAAGCTGGGCGAAGAAAAATGGCGGGAAATCCAAAATCCTTTTGAGGAAATGAACAGCGATCTAAGAAATAGAAGAGGCAAAGAGGTACCGATAGATCATAGGGACATTGCTTGCGCTGGAGAATCTTCTGTGAGTCGATTTCCATGGCGAGGAAGAGAACGAACAGAGCACAAGAATTTTACTCTTCGAATCTCAATTGAGAGACGCGCGTTCGGCAATTCATTGGCCCAGGCGACACTCTCCGTTGGAGAAATAAGGCCGCAGATTTCTCTCCCATCGCCTCTACACTCTTCTCTTCCTTCAGTCTCTTCGATTCGTCCCGTCCTTCACCGTCGGTTTCTCCCAACTGCGCAGCTTCCTTGGTTTCTGACTCCGGACTGCATTCCACTGGACGCAGACGGATTTGTATAGCTATGGTTCAGCAGGCAGCCCAAGGAGCTCCGGCGATTTATGCTAAGGAGATGGAGAGACTCTCTGCTAAGGAATCGCTGCTGTTGGCTGTGAGTATCGGTGTTTGAGTTTCTTAATGTTTTAAAGTATTGTTGATTTGTTTCGCTTCAACGATCGCGATGATAGTAGAGCATAGTATAGACCGAGAATTATGTATGTATATCGATGATTTTTGTGTTTTGATGTTCATGTTCCTTTACTCCGTGAATTATACGTTTCGTAGTGAAAATTGAAAACATGCTTGATTTAATCGTGTTTTGTTGTCGACAAGCTACTTCGTGT

Coding sequence (CDS)

ATGGTTCAGCAGGCAGCCCAAGGAGCTCCGGCGATTTATGCTAAGGAGATGGAGAGACTCTCTGCTAAGGAATCGCTGCTGTTGGCTGTGAGTATCGGTGTTTGA

Protein sequence

MVQQAAQGAPAIYAKEMERLSAKESLLLAVSIGV
Homology
[Close]
BLAST of CmoCh06G000920 vs. ExPASy Swiss-Prot
Match: Q8S9M1 (Probable plastid-lipid-associated protein 13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAP13 PE=1 SV=2)

HSP 1 Score: 45.4 bits (106), Expect = 1.5e-04
Identity = 22/30 (73.33%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  MVQQAAQGAPAIYAKEMERLSAKESLLLAV 31
          MVQ+  QG+P +YA+EMERLSAKESLLLA+
Sbjct: 50 MVQETVQGSPLVYAREMERLSAKESLLLAL 79

[Close]
BLAST of CmoCh06G000920 vs. ExPASy Swiss-Prot
Match: Q9M2P7 (Probable plastid-lipid-associated protein 9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAP9 PE=1 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 4.2e-04
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 1  MVQQAAQGAPAIYAKEMERLSAKESLLLA 30
          MVQ + QG P++YA+EMERLSAKESL+LA
Sbjct: 55 MVQDSVQGIPSVYAREMERLSAKESLILA 83

[Close]
BLAST of CmoCh06G000920 vs. ExPASy TrEMBL
Match: A0A6J1I3P6 (uncharacterized protein LOC111470266 OS=Cucurbita maxima OX=3661 GN=LOC111470266 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.7e-06
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 1   MVQQAAQGAPAIYAKEMERLSAKESLLLAVSIGV 35
           MVQQAAQGAP IYAKEMERLSAKESLLL VSIGV
Sbjct: 127 MVQQAAQGAPVIYAKEMERLSAKESLLLPVSIGV 160

[Close]
BLAST of CmoCh06G000920 vs. ExPASy TrEMBL
Match: A0A5D3DPE3 (Putative plastid-lipid-associated protein 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005440 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-04
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1  MVQQAAQGAPAIYAKEMERLSAKESLLLA 30
          MVQQAAQGAPAIYAKEMERLSAKESLLLA
Sbjct: 54 MVQQAAQGAPAIYAKEMERLSAKESLLLA 82

[Close]
BLAST of CmoCh06G000920 vs. ExPASy TrEMBL
Match: A0A0A0LEF9 (PAP_fibrillin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G807340 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-04
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1  MVQQAAQGAPAIYAKEMERLSAKESLLLA 30
          MVQQAAQGAPAIYAKEMERLSAKESLLLA
Sbjct: 54 MVQQAAQGAPAIYAKEMERLSAKESLLLA 82

[Close]
BLAST of CmoCh06G000920 vs. ExPASy TrEMBL
Match: A0A6J1DVL0 (probable plastid-lipid-associated protein 13, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111024854 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-04
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1  MVQQAAQGAPAIYAKEMERLSAKESLLLA 30
          MVQQAAQGAPAIYAKEMERLSAKESLLLA
Sbjct: 52 MVQQAAQGAPAIYAKEMERLSAKESLLLA 80

[Close]
BLAST of CmoCh06G000920 vs. ExPASy TrEMBL
Match: A0A1S3B757 (probable plastid-lipid-associated protein 13, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486767 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-04
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1  MVQQAAQGAPAIYAKEMERLSAKESLLLA 30
          MVQQAAQGAPAIYAKEMERLSAKESLLLA
Sbjct: 54 MVQQAAQGAPAIYAKEMERLSAKESLLLA 82

[Close]
BLAST of CmoCh06G000920 vs. TAIR 10
Match: AT2G42130.1 (Plastid-lipid associated protein PAP / fibrillin family protein )

HSP 1 Score: 45.4 bits (106), Expect = 1.0e-05
Identity = 22/30 (73.33%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  MVQQAAQGAPAIYAKEMERLSAKESLLLAV 31
          MVQ+  QG+P +YA+EMERLSAKESLLLA+
Sbjct: 50 MVQETVQGSPLVYAREMERLSAKESLLLAL 79

[Close]
BLAST of CmoCh06G000920 vs. TAIR 10
Match: AT2G42130.4 (Plastid-lipid associated protein PAP / fibrillin family protein )

HSP 1 Score: 45.4 bits (106), Expect = 1.0e-05
Identity = 22/30 (73.33%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  MVQQAAQGAPAIYAKEMERLSAKESLLLAV 31
          MVQ+  QG+P +YA+EMERLSAKESLLLA+
Sbjct: 50 MVQETVQGSPLVYAREMERLSAKESLLLAL 79

[Close]
BLAST of CmoCh06G000920 vs. TAIR 10
Match: AT2G42130.2 (Plastid-lipid associated protein PAP / fibrillin family protein )

HSP 1 Score: 45.4 bits (106), Expect = 1.0e-05
Identity = 22/30 (73.33%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  MVQQAAQGAPAIYAKEMERLSAKESLLLAV 31
          MVQ+  QG+P +YA+EMERLSAKESLLLA+
Sbjct: 50 MVQETVQGSPLVYAREMERLSAKESLLLAL 79

[Close]
BLAST of CmoCh06G000920 vs. TAIR 10
Match: AT2G42130.3 (Plastid-lipid associated protein PAP / fibrillin family protein )

HSP 1 Score: 45.1 bits (105), Expect = 1.3e-05
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 1  MVQQAAQGAPAIYAKEMERLSAKESLLLA 30
          MVQ+  QG+P +YA+EMERLSAKESLLLA
Sbjct: 1  MVQETVQGSPLVYAREMERLSAKESLLLA 29

[Close]
BLAST of CmoCh06G000920 vs. TAIR 10
Match: AT3G58010.1 (plastoglobulin 34kD )

HSP 1 Score: 43.9 bits (102), Expect = 3.0e-05
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 1  MVQQAAQGAPAIYAKEMERLSAKESLLLA 30
          MVQ + QG P++YA+EMERLSAKESL+LA
Sbjct: 55 MVQDSVQGIPSVYAREMERLSAKESLILA 83

The following BLAST results are available for this feature:
BLAST of CmoCh06G000920 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8S9M11.5e-0473.33Probable plastid-lipid-associated protein 13, chloroplastic OS=Arabidopsis thali... [more]
Q9M2P74.2e-0472.41Probable plastid-lipid-associated protein 9, chloroplastic OS=Arabidopsis thalia... [more]
BLAST of CmoCh06G000920 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I3P64.7e-0694.12uncharacterized protein LOC111470266 OS=Cucurbita maxima OX=3661 GN=LOC111470266... [more]
A0A5D3DPE31.5e-04100.00Putative plastid-lipid-associated protein 13 OS=Cucumis melo var. makuwa OX=1194... [more]
A0A0A0LEF91.5e-04100.00PAP_fibrillin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G8073... [more]
A0A6J1DVL01.5e-04100.00probable plastid-lipid-associated protein 13, chloroplastic OS=Momordica charant... [more]
A0A1S3B7571.5e-04100.00probable plastid-lipid-associated protein 13, chloroplastic isoform X1 OS=Cucumi... [more]
BLAST of CmoCh06G000920 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G42130.11.0e-0573.33Plastid-lipid associated protein PAP / fibrillin family protein [more]
AT2G42130.41.0e-0573.33Plastid-lipid associated protein PAP / fibrillin family protein [more]
AT2G42130.21.0e-0573.33Plastid-lipid associated protein PAP / fibrillin family protein [more]
AT2G42130.31.3e-0575.86Plastid-lipid associated protein PAP / fibrillin family protein [more]
AT3G58010.13.0e-0572.41plastoglobulin 34kD [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G000920.1CmoCh06G000920.1mRNA