CmoCh05G011970 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh05G011970
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionSuperoxide dismutase [Cu-Zn]
LocationCmo_Chr05: 9376367 .. 9380144 (+)
RNA-Seq ExpressionCmoCh05G011970
SyntenyCmoCh05G011970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCCACACGTGGTGTCTTGTGGATTCGCAACGACGATTTCATCCTTCGTTTTTTTGTATGTTCGCTACCGATTCCTCCAGCCTCCGTGCATACAAATCTCGCGCCACTTCAATGCTCTTTAATTTCTCTTTCCACTGCAGTGAAGCTCATCCTTGGTAATGATTCTCTCCCATTTCTTCTGTAATTTCAGTGTTCTTTTCTCTCTTTTTTTTGCCGGATTATCGAATTCTGTGGTGAAGCTAAATTGTTGTATCCGATTTTTGTTTGAATTCTGTTTTGGACTGTATTTTCTTTTTTTATAATTGCGTATTGAAGATTTAGGGATTGCGTTGTTTATGCTTCATTACTTTCCAGTTTCATATGGTTGTTACGTGTTATAACTCTTCGCTGAGATTTATATGGTTCTGATGGCTGTGTTTGATATCATTTCAATTTCTAAGTTACCTATTTTGAATAGAAAGAAAATTCATGTTGATTTCTGGAATGAAAACAGGCGCCTGATAGTTGTTGTTTACTGTTAATTAGAAAGAGAGTTCATGATGATTTCTGGTACAAAACTCACTATACTTGGAAATGAGCTTATGAATGTTGGAAGTAAGAAATTTTTTAGACTACATAAACGAGGATGGTCAGCAGTTCTAGAATTGTTTGCCAAAACGAATGAGTTTTGAAATTGAATTAAAAAAAATTAAAAGCTACATATAGATAAAGAACCGATGGGATCCCACATCGGTTGGGGAGGAGAACCAAACATTCTTTATAAAGGTGTGGAAACCTCTCCTAGTAGACGTTTTTTTTAAAAACCTTGAGGATAAGCTCGAAAGGGAAAGCCTAAAGAGAACAATATTTGCTAGCGGTGGGCTACCCTGCTTTTTCACTTTTGTTGACCTCGGGCTAAGTCGATACCTCAAACAAAGGGGGGAGAGAAGAGAGCCTCAGTATGATAATGAACGAAAAAGGGCATCTGCACGGGCGGAATGGATGAGCGAAAGGTGCCATGCCATGGAGTGAGGAATATCTCGAGTCTCATGTAAGACAAGAAACATAACCTCGAGGTGCTGCGCAGGAACTGCGAGACCTTCTCGAACACAGGATAGGCAATTGAGATCTCGAGCTAGCCTATTCTATTTACCTCGTAAAAGAGAGAAAGAAAGAAGGGACAGGAGAATTCATCTTTCTTCTTCTTTTACACGTCGCGAGCTCCCGAAGTCAATATTTAGCACCTTCCTTCTTGGGCTGTTATAAATGGTATCAGAGCCCAGACATCGAGTGATGCCAATGAAGAGGCTGAGCCATGAAGGGGGTGGACACGAAATGGTGTGCCAGTACGGACATTGGGCCTCGAAGGGAGTAGATTGAGGGGTCCCACATCGATTTGAGAAGAGAACGAGTGTCATTGAGGACGCTGGCCCTGAAGGGGTGGTGGGGTGGATTGTGAGATCCCACCTCAGTTGGGGAGGAGAACGAAACCAAACTGATGAGCTCTTCACCAACCTGGTGTAACAATGTCATAACTGACTACAACTTGAACTGATTTAAGATGTTGAAGATTAGCATTGATCTTGTCCCCAAAATTTGGTCACTGGGATGACTTTTTGTGTCTTTCAGATTTTTGCTTTAGTGAATTCTCATTGTTCGTTGACTATCACCATGAAGAATATGTTCAAAAGTGAAATTTCCTTGGTTTACTTTGTTGATCAGCATCCAATTTTACCAGTTATTTCAGCTCTTCTGATAACCTTCATTGGGTTTGAGTTCACTTAACGCAAAACAATGGTGAAAGCTGTTGCTGTTCTCGAGAGCAATCAGGGAGTGAAGGGAACCGTCTTCTTTAACCAAAATGGCAATGGTAGCTCAAATCGTAGTTTGAAATTTTAATTCATACAGATTTTTTGTTTTATTTTTTTTTTCATAGTTAGTATATTTTTCAGGTCCAACTACAGTTAGAGGAAATATTTCTGGCCTTACGCCAGGGCTTCATGGTTTCCATGTTCATGCCCTTGGGGACACTACCAATGGTTGCTCATCGACTGGTACGTTCTCATGAGTAACACCCTTTTAGTTCCTCAATGTTAATTACAGAGTGTCCATTGGAACTATTGGCACATTATGACTCTACTTGCAAGCAAATTGCTCGCAGGGCCTCATTTCAACCCTGAAGGCAAAGATCATGGTGCACCTGATGATGAGAATCGTCATGTTGGTGATCTAGGAAATTTGGTTGCTGGTGATGACGGTGTGTTTAATACTGTTCCATATTGCATTTCATTCTCCCTGAAATTTTTTTTTAGTAAACTGGACCCAAATGATTAGCCCCTCTAAAATGCATGACCAATGTGAGATTCCACGTCGGTTGGGGAGGAGAACAAAACATTCTTTATAAGGGCGTGGAAACTTCTCTCCCTAGTAGACGCGTTTTAAAATCCTTGAGGGAAATCCCAAAAGGGAGAGCCCAAAGACGACAATATCGATTAGCGATGGGCTTGGGTTGTTACACCTCATGATTCCAGCTTCCTCCCCATCTCCTATTGATAACAATATTAGAAAAAATCATGAATTTCATGTTAAAGCACTCTTTCTTTTCCTTGTTTAGGATTAATTTGACATGATTGTAAAGATGATTACTGTCTATTATACAGGTACTGCTACTTTCTCTATTATTGACAAACAGGTTTGGACAATTTAATGTTTATTTGGATGTTTCACCATCTCTACTAAAAGTCTCAGCTAGTGAGCATCATTTGTTTCTATGTTATGCAGATTTCCCTTGTTGGAACAAATTCCGTTCTTGGAAGATCTATTGTTGTCCACGCCGATCCCGATGATCTTGGCAGGGGTAATATTATTTTATAAATATTCATAGCTATATTTCCAGAAAGAATCCCACAGATTGTAACTTATTAATATGATCTTCTTCGAATTCAGTGATATCCTTTCGGGGTTCTTTGCTTTTTTCACTTTGTACGTGTAGACATCCATTTTCTTCACATTTATATAACTAACTTTACTTGAATCTTAAACCATGAGATTATTTAATGTGCTGGAAGTATCGATCTTTGAAATGTATGTTCCCTTCGATTAATTATAAGCCTCCCCTTTGTCTTTGCACGTCAAGTAGGTGACCTCCACCAGGATGACCAAATAAAGAAATCTGAAGCATAATCTGTGAACTGTTCTGATCTTGTCTGCAGGTCAAACCGAACTTAGCCTGACCACTGGCAATGCGGGTGAGAGAATTGCTTGTGGTAAGTTACAAAATTTCTCATTACTGGTTGGTTTTGAAGTGGTTGCTGTATGTCACAACCAACCTAACCAGTCCCCAAATAAATCATTGAGGACGATATCACGACGTTGCACGGTTGAAAAAGTATAACCCATATTTTAATATGCACATAGCGTATTGATTGGGACTTTTTGTGGGACAAATCTGTTCTCGAGCAACTTTATAGTTGGCATAAACATCCATTATTCGGTGTTTCTTGCAGGCGTTATCGGGCTGCAAGAGTGAAGTACATTTCGACCGCCATGGTTTAATGATGAGCGATGAAGTAGCGGAGTATGCAAAGCTATACTTTGGTTTCCAACACATATACAGTGTATTAAACTTGGTATGTGAAAAGGTATGAAAAGGCATGGTGAAGTTGGAAGTCTTATATCAGAAGTAAATAAGATTAGAGTTTATTGTATCAATACTCCACTTCATATAGATTTACATTATAAACAAATGATATTTTGCTCCTTTCAACAATTTTATGCAATTATAAAGGTTTTTAAATCA

mRNA sequence

GTCCACACGTGGTGTCTTGTGGATTCGCAACGACGATTTCATCCTTCGTTTTTTTGTATGTTCGCTACCGATTCCTCCAGCCTCCGTGCATACAAATCTCGCGCCACTTCAATGCTCTTTAATTTCTCTTTCCACTGCAGTGAAGCTCATCCTTGCATCCAATTTTACCAGTTATTTCAGCTCTTCTGATAACCTTCATTGGGTTTGAGTTCACTTAACGCAAAACAATGGTGAAAGCTGTTGCTGTTCTCGAGAGCAATCAGGGAGTGAAGGGAACCGTCTTCTTTAACCAAAATGGCAATGGTCCAACTACAGTTAGAGGAAATATTTCTGGCCTTACGCCAGGGCTTCATGGTTTCCATGTTCATGCCCTTGGGGACACTACCAATGGTTGCTCATCGACTGGGCCTCATTTCAACCCTGAAGGCAAAGATCATGGTGCACCTGATGATGAGAATCGTCATGTTGGTGATCTAGGAAATTTGGTTGCTGGTGATGACGGTACTGCTACTTTCTCTATTATTGACAAACAGATTTCCCTTGTTGGAACAAATTCCGTTCTTGGAAGATCTATTGTTGTCCACGCCGATCCCGATGATCTTGGCAGGGGTCAAACCGAACTTAGCCTGACCACTGGCAATGCGGGTGAGAGAATTGCTTGTGGCGTTATCGGGCTGCAAGAGTGAAGTACATTTCGACCGCCATGGTTTAATGATGAGCGATGAAGTAGCGGAGTATGCAAAGCTATACTTTGGTTTCCAACACATATACAGTGTATTAAACTTGGTATGTGAAAAGGTATGAAAAGGCATGGTGAAGTTGGAAGTCTTATATCAGAAGTAAATAAGATTAGAGTTTATTGTATCAATACTCCACTTCATATAGATTTACATTATAAACAAATGATATTTTGCTCCTTTCAACAATTTTATGCAATTATAAAGGTTTTTAAATCA

Coding sequence (CDS)

ATGGTGAAAGCTGTTGCTGTTCTCGAGAGCAATCAGGGAGTGAAGGGAACCGTCTTCTTTAACCAAAATGGCAATGGTCCAACTACAGTTAGAGGAAATATTTCTGGCCTTACGCCAGGGCTTCATGGTTTCCATGTTCATGCCCTTGGGGACACTACCAATGGTTGCTCATCGACTGGGCCTCATTTCAACCCTGAAGGCAAAGATCATGGTGCACCTGATGATGAGAATCGTCATGTTGGTGATCTAGGAAATTTGGTTGCTGGTGATGACGGTACTGCTACTTTCTCTATTATTGACAAACAGATTTCCCTTGTTGGAACAAATTCCGTTCTTGGAAGATCTATTGTTGTCCACGCCGATCCCGATGATCTTGGCAGGGGTCAAACCGAACTTAGCCTGACCACTGGCAATGCGGGTGAGAGAATTGCTTGTGGCGTTATCGGGCTGCAAGAGTGA

Protein sequence

MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTGPHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHADPDDLGRGQTELSLTTGNAGERIACGVIGLQE
Homology
[Close]
BLAST of CmoCh05G011970 vs. ExPASy Swiss-Prot
Match: Q07796 (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas OX=4120 GN=SODCC PE=2 SV=2)

HSP 1 Score: 244.6 bits (623), Expect = 7.3e-64
Identity = 112/151 (74.17%), Postives = 131/151 (86.75%), Query Frame = 0 

Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVL S++GV GT+FF+Q G+GPTTV GN+SGL PGLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120
           PHFNP GK+HGAP D+NRH GDLGN+  G+DGTA+F+I DKQI L G NSV+GR++VVH 
Sbjct: 61  PHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHG 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           DPDDLG+G  ELS +TGNAG R+ACG+IGLQ
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151

[Close]
BLAST of CmoCh05G011970 vs. ExPASy Swiss-Prot
Match: P93258 (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum OX=3544 GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 9.5e-64
Identity = 115/151 (76.16%), Postives = 128/151 (84.77%), Query Frame = 0 

Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAV VL S++GV GTV F Q G+GPTTV GN+SGL PGLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVVVLSSSEGVSGTVQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120
           PHFNP GK+HGAP+DE RH GDLGN+  GDDGTATF+IID QI L G NS++GR++VVHA
Sbjct: 61  PHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           DPDDLGRG  ELS  TGNAG R+ACGVIGLQ
Sbjct: 121 DPDDLGRGGHELSKATGNAGGRVACGVIGLQ 151

[Close]
BLAST of CmoCh05G011970 vs. ExPASy Swiss-Prot
Match: Q42611 (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea OX=3707 GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 240.4 bits (612), Expect = 1.4e-62
Identity = 112/151 (74.17%), Postives = 127/151 (84.11%), Query Frame = 0 

Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           M K V VL S++GVKGT+FF Q GNG TTV G +SGL PGLHGFHVHALGDTTNGC STG
Sbjct: 1   MGKGVRVLNSSEGVKGTIFFTQEGNGTTTVTGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120
           PHFNPEGK HGAP+D NRH GDLGN+  GDDGTATF+I D QI L G NS++GR++VVHA
Sbjct: 61  PHFNPEGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           +PDDLG+G  ELSLTTGNAG R+ACG+IGLQ
Sbjct: 121 EPDDLGKGGHELSLTTGNAGGRVACGIIGLQ 151

[Close]
BLAST of CmoCh05G011970 vs. ExPASy Swiss-Prot
Match: P09678 (Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata OX=3716 GN=SODCC PE=1 SV=2)

HSP 1 Score: 240.4 bits (612), Expect = 1.4e-62
Identity = 111/151 (73.51%), Postives = 127/151 (84.11%), Query Frame = 0 

Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           M K VAVL S++GVKGT+FF   GNG TTV G +SGL PGLHGFHVHALGD TNGC STG
Sbjct: 1   MAKGVAVLNSSEGVKGTIFFTHEGNGATTVTGTVSGLRPGLHGFHVHALGDNTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120
           PHFNP+GK HGAP+D NRH GDLGN++ GDDGTATF+I D QI L G NS++GR+IVVHA
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNIIVGDDGTATFTITDSQIPLSGPNSIVGRAIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           DPDDLG+G  ELSL+TGNAG R+ACG+IGLQ
Sbjct: 121 DPDDLGKGGHELSLSTGNAGGRVACGIIGLQ 151

[Close]
BLAST of CmoCh05G011970 vs. ExPASy Swiss-Prot
Match: C0HK70 (Superoxide dismutase [Cu-Zn] OS=Zingiber officinale OX=94328 PE=1 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.8e-62
Identity = 111/151 (73.51%), Postives = 130/151 (86.09%), Query Frame = 0 

Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVL S++GVKGT++F Q G+GPTTV G+I+GL PGLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVAVLGSSEGVKGTIYFVQEGDGPTTVTGSITGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120
           PHFNP GK+HGAP+DENRH GDLGN  AG+DG  T S++D QI L G NS++GR++VVHA
Sbjct: 61  PHFNPAGKEHGAPEDENRHAGDLGNATAGEDGIVTVSVVDSQIPLSGPNSIIGRAVVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           DPDDLG+G  ELS TTGNAG R+ACG+IGLQ
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151

[Close]
BLAST of CmoCh05G011970 vs. ExPASy TrEMBL
Match: A0A6J1G334 (Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata OX=3662 GN=LOC111450340 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 6.8e-81
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 153
           DPDDLGRGQTELSLTTGNAGERIACGVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 152

[Close]
BLAST of CmoCh05G011970 vs. ExPASy TrEMBL
Match: A0A6J1KIS8 (Superoxide dismutase [Cu-Zn] OS=Cucurbita maxima OX=3661 GN=LOC111493618 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.7e-79
Identity = 150/152 (98.68%), Postives = 150/152 (98.68%), Query Frame = 0 

Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGL PGLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLIPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVG NSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 153
           DPDDLGRGQTELSLTTGNAGERIACGVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 152

[Close]
BLAST of CmoCh05G011970 vs. ExPASy TrEMBL
Match: A0A6J1G326 (Superoxide dismutase OS=Cucurbita moschata OX=3662 GN=LOC111450340 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 3.7e-79
Identity = 152/156 (97.44%), Postives = 152/156 (97.44%), Query Frame = 0 

Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIAC----GVIGLQE 153
           DPDDLGRGQTELSLTTGNAGERIAC    GVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACVFLAGVIGLQE 156

[Close]
BLAST of CmoCh05G011970 vs. ExPASy TrEMBL
Match: A0A6J1KC95 (Superoxide dismutase OS=Cucurbita maxima OX=3661 GN=LOC111493618 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 9.2e-78
Identity = 150/156 (96.15%), Postives = 150/156 (96.15%), Query Frame = 0 

Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGL PGLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLIPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVG NSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIAC----GVIGLQE 153
           DPDDLGRGQTELSLTTGNAGERIAC    GVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACVFLAGVIGLQE 156

[Close]
BLAST of CmoCh05G011970 vs. ExPASy TrEMBL
Match: A0A1S3C1D1 (Superoxide dismutase [Cu-Zn] OS=Cucumis melo OX=3656 GN=LOC103495717 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.4e-73
Identity = 139/152 (91.45%), Postives = 144/152 (94.74%), Query Frame = 0 

Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGV GT+FF+QNGNGPTT+ GNISGL  GLHGFHVHALGDTTNGC STG
Sbjct: 1   MVKAVAVLESNQGVSGTIFFSQNGNGPTTITGNISGLKAGLHGFHVHALGDTTNGCLSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGN+VAGD+GTATFSIIDKQISLVG NSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNVVAGDNGTATFSIIDKQISLVGRNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 153
           DPDDLGRG TELSLTTGNAGERI CGVIGLQE
Sbjct: 121 DPDDLGRGGTELSLTTGNAGERIGCGVIGLQE 152

[Close]
BLAST of CmoCh05G011970 vs. NCBI nr
Match: XP_022946180.1 (superoxide dismutase [Cu-Zn]-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 309.7 bits (792), Expect = 1.4e-80
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 153
           DPDDLGRGQTELSLTTGNAGERIACGVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 152

[Close]
BLAST of CmoCh05G011970 vs. NCBI nr
Match: KAG7030279.1 (Superoxide dismutase [Cu-Zn] 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 307.4 bits (786), Expect = 7.0e-80
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVG NSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 153
           DPDDLGRGQTELSLTTGNAGERIACGVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 152

[Close]
BLAST of CmoCh05G011970 vs. NCBI nr
Match: XP_022999148.1 (superoxide dismutase [Cu-Zn] 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 305.1 bits (780), Expect = 3.5e-79
Identity = 150/152 (98.68%), Postives = 150/152 (98.68%), Query Frame = 0 

Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGL PGLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLIPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVG NSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 153
           DPDDLGRGQTELSLTTGNAGERIACGVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQE 152

[Close]
BLAST of CmoCh05G011970 vs. NCBI nr
Match: XP_022946178.1 (superoxide dismutase [Cu-Zn] 1-like isoform X1 [Cucurbita moschata] >XP_022946179.1 superoxide dismutase [Cu-Zn] 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 303.9 bits (777), Expect = 7.7e-79
Identity = 152/156 (97.44%), Postives = 152/156 (97.44%), Query Frame = 0 

Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIAC----GVIGLQE 153
           DPDDLGRGQTELSLTTGNAGERIAC    GVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACVFLAGVIGLQE 156

[Close]
BLAST of CmoCh05G011970 vs. NCBI nr
Match: XP_022999146.1 (superoxide dismutase [Cu-Zn] 1-like isoform X1 [Cucurbita maxima] >XP_022999147.1 superoxide dismutase [Cu-Zn] 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 299.3 bits (765), Expect = 1.9e-77
Identity = 150/156 (96.15%), Postives = 150/156 (96.15%), Query Frame = 0 

Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGL PGLHGFHVHALGDTTNGCSSTG
Sbjct: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLIPGLHGFHVHALGDTTNGCSSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120
           PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVG NSVLGRSIVVHA
Sbjct: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGPNSVLGRSIVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIAC----GVIGLQE 153
           DPDDLGRGQTELSLTTGNAGERIAC    GVIGLQE
Sbjct: 121 DPDDLGRGQTELSLTTGNAGERIACVFLAGVIGLQE 156

[Close]
BLAST of CmoCh05G011970 vs. TAIR 10
Match: AT1G08830.1 (copper/zinc superoxide dismutase 1 )

HSP 1 Score: 237.3 bits (604), Expect = 8.3e-63
Identity = 110/151 (72.85%), Postives = 126/151 (83.44%), Query Frame = 0 

Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           M K VAVL S++GV GT+FF Q G+G TTV G +SGL PGLHGFHVHALGDTTNGC STG
Sbjct: 1   MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120
           PHFNP+GK HGAP+D NRH GDLGN+  GDDGTATF+I D QI L G NS++GR++VVHA
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           DPDDLG+G  ELSL TGNAG R+ACG+IGLQ
Sbjct: 121 DPDDLGKGGHELSLATGNAGGRVACGIIGLQ 151

[Close]
BLAST of CmoCh05G011970 vs. TAIR 10
Match: AT1G08830.2 (copper/zinc superoxide dismutase 1 )

HSP 1 Score: 237.3 bits (604), Expect = 8.3e-63
Identity = 110/151 (72.85%), Postives = 126/151 (83.44%), Query Frame = 0 

Query: 1   MVKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTG 60
           M K VAVL S++GV GT+FF Q G+G TTV G +SGL PGLHGFHVHALGDTTNGC STG
Sbjct: 1   MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHA 120
           PHFNP+GK HGAP+D NRH GDLGN+  GDDGTATF+I D QI L G NS++GR++VVHA
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           DPDDLG+G  ELSL TGNAG R+ACG+IGLQ
Sbjct: 121 DPDDLGKGGHELSLATGNAGGRVACGIIGLQ 151

[Close]
BLAST of CmoCh05G011970 vs. TAIR 10
Match: AT2G28190.1 (copper/zinc superoxide dismutase 2 )

HSP 1 Score: 191.8 bits (486), Expect = 4.0e-49
Identity = 95/148 (64.19%), Postives = 109/148 (73.65%), Query Frame = 0 

Query: 3   KAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTGPH 62
           KAVAVL+    V+G V   Q+ +GPTTV   I+GLTPG HGFH+H  GDTTNGC STGPH
Sbjct: 66  KAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPH 125

Query: 63  FNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHADP 122
           FNP    HGAP+DE RH GDLGN+ A  DG A  +I+D QI L G NSV+GR+ VVH   
Sbjct: 126 FNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELK 185

Query: 123 DDLGRGQTELSLTTGNAGERIACGVIGL 151
           DDLG+G  ELSLTTGNAG R+ACGVIGL
Sbjct: 186 DDLGKGGHELSLTTGNAGGRLACGVIGL 213

[Close]
BLAST of CmoCh05G011970 vs. TAIR 10
Match: AT5G18100.1 (copper/zinc superoxide dismutase 3 )

HSP 1 Score: 186.4 bits (472), Expect = 1.7e-47
Identity = 87/150 (58.00%), Postives = 113/150 (75.33%), Query Frame = 0 

Query: 2   VKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTGP 61
           ++AVA++  +  V+G + F Q+ +G T V G ISGL+PG HGFH+H+ GDTTNGC STGP
Sbjct: 8   LRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 62  HFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHAD 121
           HFNP  + HG P++E RH GDLGN++AG +G A   I DK I L G  S+LGR++VVHAD
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 122 PDDLGRGQTELSLTTGNAGERIACGVIGLQ 152
           PDDLG+G  +LS +TGNAG R+ CG+IGLQ
Sbjct: 128 PDDLGKGGHKLSKSTGNAGSRVGCGIIGLQ 157

[Close]
BLAST of CmoCh05G011970 vs. TAIR 10
Match: AT5G18100.2 (copper/zinc superoxide dismutase 3 )

HSP 1 Score: 156.8 bits (395), Expect = 1.4e-38
Identity = 73/127 (57.48%), Postives = 95/127 (74.80%), Query Frame = 0 

Query: 2   VKAVAVLESNQGVKGTVFFNQNGNGPTTVRGNISGLTPGLHGFHVHALGDTTNGCSSTGP 61
           ++AVA++  +  V+G + F Q+ +G T V G ISGL+PG HGFH+H+ GDTTNGC STGP
Sbjct: 8   LRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 62  HFNPEGKDHGAPDDENRHVGDLGNLVAGDDGTATFSIIDKQISLVGTNSVLGRSIVVHAD 121
           HFNP  + HG P++E RH GDLGN++AG +G A   I DK I L G  S+LGR++VVHAD
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 122 PDDLGRG 129
           PDDLG+G
Sbjct: 128 PDDLGKG 134

The following BLAST results are available for this feature:
BLAST of CmoCh05G011970 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q077967.3e-6474.17Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas OX=4120 GN=SODCC PE=2 SV=2[more]
P932589.5e-6476.16Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum OX=3544 GN=SODCC... [more]
Q426111.4e-6274.17Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea OX=3707 GN=SODCC1 PE=2 SV=3[more]
P096781.4e-6273.51Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata OX=3716 GN=SODCC... [more]
C0HK701.8e-6273.51Superoxide dismutase [Cu-Zn] OS=Zingiber officinale OX=94328 PE=1 SV=1[more]
BLAST of CmoCh05G011970 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G3346.8e-81100.00Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata OX=3662 GN=LOC111450340 PE=3 ... [more]
A0A6J1KIS81.7e-7998.68Superoxide dismutase [Cu-Zn] OS=Cucurbita maxima OX=3661 GN=LOC111493618 PE=3 SV... [more]
A0A6J1G3263.7e-7997.44Superoxide dismutase OS=Cucurbita moschata OX=3662 GN=LOC111450340 PE=3 SV=1[more]
A0A6J1KC959.2e-7896.15Superoxide dismutase OS=Cucurbita maxima OX=3661 GN=LOC111493618 PE=3 SV=1[more]
A0A1S3C1D11.4e-7391.45Superoxide dismutase [Cu-Zn] OS=Cucumis melo OX=3656 GN=LOC103495717 PE=3 SV=1[more]
BLAST of CmoCh05G011970 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022946180.11.4e-80100.00superoxide dismutase [Cu-Zn]-like isoform X2 [Cucurbita moschata][more]
KAG7030279.17.0e-8099.34Superoxide dismutase [Cu-Zn] 1 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022999148.13.5e-7998.68superoxide dismutase [Cu-Zn] 1-like isoform X2 [Cucurbita maxima][more]
XP_022946178.17.7e-7997.44superoxide dismutase [Cu-Zn] 1-like isoform X1 [Cucurbita moschata] >XP_02294617... [more]
XP_022999146.11.9e-7796.15superoxide dismutase [Cu-Zn] 1-like isoform X1 [Cucurbita maxima] >XP_022999147.... [more]
BLAST of CmoCh05G011970 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G08830.18.3e-6372.85copper/zinc superoxide dismutase 1 [more]
AT1G08830.28.3e-6372.85copper/zinc superoxide dismutase 1 [more]
AT2G28190.14.0e-4964.19copper/zinc superoxide dismutase 2 [more]
AT5G18100.11.7e-4758.00copper/zinc superoxide dismutase 3 [more]
AT5G18100.21.4e-3857.48copper/zinc superoxide dismutase 3 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001424Superoxide dismutase, copper/zinc binding domainPRINTSPR00068CUZNDISMTASEcoord: 123..149
score: 68.5
coord: 79..88
score: 70.93
coord: 43..65
score: 78.93
coord: 98..120
score: 54.77
IPR001424Superoxide dismutase, copper/zinc binding domainPFAMPF00080Sod_Cucoord: 11..148
e-value: 1.1E-50
score: 171.5
IPR001424Superoxide dismutase, copper/zinc binding domainCDDcd00305Cu-Zn_Superoxide_Dismutasecoord: 2..145
e-value: 5.33744E-61
score: 182.845
IPR036423Superoxide dismutase-like, copper/zinc binding domain superfamilyGENE3D2.60.40.200Superoxide dismutase, copper/zinc binding domaincoord: 1..152
e-value: 3.4E-67
score: 227.4
IPR036423Superoxide dismutase-like, copper/zinc binding domain superfamilySUPERFAMILY49329Cu,Zn superoxide dismutase-likecoord: 2..150
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..77
NoneNo IPR availablePANTHERPTHR10003:SF84SUPEROXIDE DISMUTASE [CU-ZN]coord: 1..152
IPR024134Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperonePANTHERPTHR10003SUPEROXIDE DISMUTASE CU-ZN -RELATEDcoord: 1..152
IPR018152Superoxide dismutase, copper/zinc, binding sitePROSITEPS00332SOD_CU_ZN_2coord: 137..148
IPR018152Superoxide dismutase, copper/zinc, binding sitePROSITEPS00087SOD_CU_ZN_1coord: 43..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G011970.1CmoCh05G011970.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019430 removal of superoxide radicals
biological_process GO:0006801 superoxide metabolic process
molecular_function GO:0005507 copper ion binding
molecular_function GO:0004784 superoxide dismutase activity
molecular_function GO:0046872 metal ion binding