CmoCh05G008310 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGGTAGCACGTGGCACAAAATCTAGAACTTTATACACTGCTGGAGGGTGTATGAACAGAGTTGTTGTTGCTGAGAGTGCTTCAAATTCAAGTATATGGCACAATAGACTTGGACATATGAGCGTTAAAGGAATGAAGATGTTGGCTGCGGGAGGAGTTTTAGAAGGTCTGAAATCTGTTGATATGAGTTCTTATGAGAACTGCGTTATGAGCAAACAAAAGCGAGTTAGCTTCACAAAGACTACCAGAGAATTGAAGAAAGATACCGGGACAACGAAGCAAGTGGGAGTTGAGGTTGAGTTGCAGAACAATTCACATAATGATGTTGTAGTGGATACTCAAGAAACTCCTAAGACTGTTGCTGAGAAACCAGAGGTGAAGCAAGTGGGAGTTGAGGTTGAGTTGCTGAAAGATTCACATAGTGATGTTGTAGCAGATACTCAAAAAACTTATGAGACTCTTGTTGAGAAACCAGAGGTGAAGCAAGTTGGAGTTGAGGTTGAGGTTGAGTTGCTGAAAGATTCACCTAGTGATGTTCTTGCCTAATTCTTGAGTATCATTCAGAGTCTTCTTTACACTATTGGTTGGTGACTGATGAAGTGGAACGAAAGCCCCTTGATGAGGACCTACAGTTGGAGGATACAACTAAGTGGGAGCAAGCCATGGATGATGGAATGTTTAGGCTTCAGAAATGTGTTGCTCTTTCATCTGTTGAGGCTGAGTACGTGGCAATAGCTGAAGATGGAAAGGAGATGATATGGATGACGGACTATCTAGAAGAATTAGGCAAGAAGCAGCGTGAAAAGATTCTTCAGATAGATAGTTAA ATGGTGGTAGCACGTGGCACAAAATCTAGAACTTTATACACTGCTGGAGGGTGTATGAACAGAGTTGTTGTTGCTGAGAGTGCTTCAAATTCAAGTATATGGCACAATAGACTTGGACATATGAGCGTTAAAGGAATGAAGATGTTGGCTGCGGGAGGAGTTTTAGAAGGTCTGAAATCTGTTGATATGAGTTCTTATGAGAACTGCGTTATGAGCAAACAAAAGCGAGTTAGCTTCACAAAGACTACCAGAGAATTGAAGAAAGATACCGGGACAACGAAGCAAGTGGGAGTTGAGGTTGAGTTGCAGAACAATTCACATAATGATGTTGTAGTGGATACTCAAGAAACTCCTAAGACTGTTGCTGAGAAACCAGAGGTGAAGCAAGTGGGAGTTGAGGTTGAGTTGCTGAAAGATTCACATAGTGATGTTGTAGCAGATACTCAAAAAACTTATGAGACTCTTGTTGAGAAACCAGAGTATCATTCAGAGTCTTCTTTACACTATTGGTTGGTGACTGATGAAGTGGAACGAAAGCCCCTTGATGAGGACCTACAGTTGGAGGATACAACTAAGTGGGAGCAAGCCATGGATGATGGAATGTTTAGGCTTCAGAAATGTGTTGCTCTTTCATCTGTTGAGGCTGAGTACGTGGCAATAGCTGAAGATGGAAAGGAGATGATATGGATGACGGACTATCTAGAAGAATTAGGCAAGAAGCAGCGTGAAAAGATTCTTCAGATAGATAGTTAA ATGGTGGTAGCACGTGGCACAAAATCTAGAACTTTATACACTGCTGGAGGGTGTATGAACAGAGTTGTTGTTGCTGAGAGTGCTTCAAATTCAAGTATATGGCACAATAGACTTGGACATATGAGCGTTAAAGGAATGAAGATGTTGGCTGCGGGAGGAGTTTTAGAAGGTCTGAAATCTGTTGATATGAGTTCTTATGAGAACTGCGTTATGAGCAAACAAAAGCGAGTTAGCTTCACAAAGACTACCAGAGAATTGAAGAAAGATACCGGGACAACGAAGCAAGTGGGAGTTGAGGTTGAGTTGCAGAACAATTCACATAATGATGTTGTAGTGGATACTCAAGAAACTCCTAAGACTGTTGCTGAGAAACCAGAGGTGAAGCAAGTGGGAGTTGAGGTTGAGTTGCTGAAAGATTCACATAGTGATGTTGTAGCAGATACTCAAAAAACTTATGAGACTCTTGTTGAGAAACCAGAGTATCATTCAGAGTCTTCTTTACACTATTGGTTGGTGACTGATGAAGTGGAACGAAAGCCCCTTGATGAGGACCTACAGTTGGAGGATACAACTAAGTGGGAGCAAGCCATGGATGATGGAATGTTTAGGCTTCAGAAATGTGTTGCTCTTTCATCTGTTGAGGCTGAGTACGTGGCAATAGCTGAAGATGGAAAGGAGATGATATGGATGACGGACTATCTAGAAGAATTAGGCAAGAAGCAGCGTGAAAAGATTCTTCAGATAGATAGTTAA MVVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSFTKTTRELKKDTGTTKQVGVEVELQNNSHNDVVVDTQETPKTVAEKPEVKQVGVEVELLKDSHSDVVADTQKTYETLVEKPEYHSESSLHYWLVTDEVERKPLDEDLQLEDTTKWEQAMDDGMFRLQKCVALSSVEAEYVAIAEDGKEMIWMTDYLEELGKKQREKILQIDS Homology
BLAST of CmoCh05G008310 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.1e-08 Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 0
HSP 2 Score: 55.5 bits (132), Expect = 1.0e-06 Identity = 30/89 (33.71%), Postives = 48/89 (53.93%), Query Frame = 0
BLAST of CmoCh05G008310 vs. ExPASy Swiss-Prot
Match: P93293 (Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana OX=3702 GN=AtMg00300 PE=4 SV=1) HSP 1 Score: 48.1 bits (113), Expect = 1.6e-04 Identity = 26/81 (32.10%), Postives = 46/81 (56.79%), Query Frame = 0
BLAST of CmoCh05G008310 vs. ExPASy TrEMBL
Match: A0A4Y1RV75 (Toll-Interleukin-Resistance domain family protein OS=Prunus dulcis OX=3755 GN=Prudu_019642 PE=4 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 4.5e-21 Identity = 86/290 (29.66%), Postives = 141/290 (48.62%), Query Frame = 0
BLAST of CmoCh05G008310 vs. ExPASy TrEMBL
Match: A0A2G3CAD5 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_16881 PE=4 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 5.9e-21 Identity = 60/88 (68.18%), Postives = 64/88 (72.73%), Query Frame = 0
BLAST of CmoCh05G008310 vs. ExPASy TrEMBL
Match: A0A484MUU4 (gag_pre-integrs domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS34489 PE=4 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 1.0e-17 Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 0
BLAST of CmoCh05G008310 vs. ExPASy TrEMBL
Match: A0A438CET9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4205 PE=4 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 2.5e-16 Identity = 83/262 (31.68%), Postives = 121/262 (46.18%), Query Frame = 0
BLAST of CmoCh05G008310 vs. ExPASy TrEMBL
Match: A0A2G3B8H5 (IAA-amino acid hydrolase ILR1-like 1 OS=Capsicum chinense OX=80379 GN=BC332_28025 PE=3 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 1.3e-15 Identity = 48/87 (55.17%), Postives = 57/87 (65.52%), Query Frame = 0
BLAST of CmoCh05G008310 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein ) HSP 1 Score: 48.1 bits (113), Expect = 1.2e-05 Identity = 26/81 (32.10%), Postives = 46/81 (56.79%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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