CmoCh05G008310 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh05G008310
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCmo_Chr05: 5061821 .. 5062650 (-)
RNA-Seq ExpressionCmoCh05G008310
SyntenyCmoCh05G008310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTAGCACGTGGCACAAAATCTAGAACTTTATACACTGCTGGAGGGTGTATGAACAGAGTTGTTGTTGCTGAGAGTGCTTCAAATTCAAGTATATGGCACAATAGACTTGGACATATGAGCGTTAAAGGAATGAAGATGTTGGCTGCGGGAGGAGTTTTAGAAGGTCTGAAATCTGTTGATATGAGTTCTTATGAGAACTGCGTTATGAGCAAACAAAAGCGAGTTAGCTTCACAAAGACTACCAGAGAATTGAAGAAAGATACCGGGACAACGAAGCAAGTGGGAGTTGAGGTTGAGTTGCAGAACAATTCACATAATGATGTTGTAGTGGATACTCAAGAAACTCCTAAGACTGTTGCTGAGAAACCAGAGGTGAAGCAAGTGGGAGTTGAGGTTGAGTTGCTGAAAGATTCACATAGTGATGTTGTAGCAGATACTCAAAAAACTTATGAGACTCTTGTTGAGAAACCAGAGGTGAAGCAAGTTGGAGTTGAGGTTGAGGTTGAGTTGCTGAAAGATTCACCTAGTGATGTTCTTGCCTAATTCTTGAGTATCATTCAGAGTCTTCTTTACACTATTGGTTGGTGACTGATGAAGTGGAACGAAAGCCCCTTGATGAGGACCTACAGTTGGAGGATACAACTAAGTGGGAGCAAGCCATGGATGATGGAATGTTTAGGCTTCAGAAATGTGTTGCTCTTTCATCTGTTGAGGCTGAGTACGTGGCAATAGCTGAAGATGGAAAGGAGATGATATGGATGACGGACTATCTAGAAGAATTAGGCAAGAAGCAGCGTGAAAAGATTCTTCAGATAGATAGTTAA

mRNA sequence

ATGGTGGTAGCACGTGGCACAAAATCTAGAACTTTATACACTGCTGGAGGGTGTATGAACAGAGTTGTTGTTGCTGAGAGTGCTTCAAATTCAAGTATATGGCACAATAGACTTGGACATATGAGCGTTAAAGGAATGAAGATGTTGGCTGCGGGAGGAGTTTTAGAAGGTCTGAAATCTGTTGATATGAGTTCTTATGAGAACTGCGTTATGAGCAAACAAAAGCGAGTTAGCTTCACAAAGACTACCAGAGAATTGAAGAAAGATACCGGGACAACGAAGCAAGTGGGAGTTGAGGTTGAGTTGCAGAACAATTCACATAATGATGTTGTAGTGGATACTCAAGAAACTCCTAAGACTGTTGCTGAGAAACCAGAGGTGAAGCAAGTGGGAGTTGAGGTTGAGTTGCTGAAAGATTCACATAGTGATGTTGTAGCAGATACTCAAAAAACTTATGAGACTCTTGTTGAGAAACCAGAGTATCATTCAGAGTCTTCTTTACACTATTGGTTGGTGACTGATGAAGTGGAACGAAAGCCCCTTGATGAGGACCTACAGTTGGAGGATACAACTAAGTGGGAGCAAGCCATGGATGATGGAATGTTTAGGCTTCAGAAATGTGTTGCTCTTTCATCTGTTGAGGCTGAGTACGTGGCAATAGCTGAAGATGGAAAGGAGATGATATGGATGACGGACTATCTAGAAGAATTAGGCAAGAAGCAGCGTGAAAAGATTCTTCAGATAGATAGTTAA

Coding sequence (CDS)

ATGGTGGTAGCACGTGGCACAAAATCTAGAACTTTATACACTGCTGGAGGGTGTATGAACAGAGTTGTTGTTGCTGAGAGTGCTTCAAATTCAAGTATATGGCACAATAGACTTGGACATATGAGCGTTAAAGGAATGAAGATGTTGGCTGCGGGAGGAGTTTTAGAAGGTCTGAAATCTGTTGATATGAGTTCTTATGAGAACTGCGTTATGAGCAAACAAAAGCGAGTTAGCTTCACAAAGACTACCAGAGAATTGAAGAAAGATACCGGGACAACGAAGCAAGTGGGAGTTGAGGTTGAGTTGCAGAACAATTCACATAATGATGTTGTAGTGGATACTCAAGAAACTCCTAAGACTGTTGCTGAGAAACCAGAGGTGAAGCAAGTGGGAGTTGAGGTTGAGTTGCTGAAAGATTCACATAGTGATGTTGTAGCAGATACTCAAAAAACTTATGAGACTCTTGTTGAGAAACCAGAGTATCATTCAGAGTCTTCTTTACACTATTGGTTGGTGACTGATGAAGTGGAACGAAAGCCCCTTGATGAGGACCTACAGTTGGAGGATACAACTAAGTGGGAGCAAGCCATGGATGATGGAATGTTTAGGCTTCAGAAATGTGTTGCTCTTTCATCTGTTGAGGCTGAGTACGTGGCAATAGCTGAAGATGGAAAGGAGATGATATGGATGACGGACTATCTAGAAGAATTAGGCAAGAAGCAGCGTGAAAAGATTCTTCAGATAGATAGTTAA

Protein sequence

MVVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSFTKTTRELKKDTGTTKQVGVEVELQNNSHNDVVVDTQETPKTVAEKPEVKQVGVEVELLKDSHSDVVADTQKTYETLVEKPEYHSESSLHYWLVTDEVERKPLDEDLQLEDTTKWEQAMDDGMFRLQKCVALSSVEAEYVAIAEDGKEMIWMTDYLEELGKKQREKILQIDS
Homology
BLAST of CmoCh05G008310 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-08
Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 0

Query: 203  RLQKCVALSSVEAEYVAIAEDGKEMIWMTDYLEELGKKQREKILQIDS 251
            +LQKCVALS+ EAEY+A  E GKEMIW+  +L+ELG  Q+E ++  DS
Sbjct: 1210 KLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDS 1257


HSP 2 Score: 55.5 bits (132), Expect = 1.0e-06
Identity = 30/89 (33.71%), Postives = 48/89 (53.93%), Query Frame = 0

Query: 1   MVVARGTKSRTLYTAGG--CMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGL 60
           +V+A+G    TLY      C   +  A+   +  +WH R+GHMS KG+++LA   ++   
Sbjct: 390 LVIAKGVARGTLYRTNAEICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYA 449

Query: 61  KSVDMSSYENCVMSKQKRVSF-TKTTREL 87
           K   +   + C+  KQ RVSF T + R+L
Sbjct: 450 KGTTVKPCDYCLFGKQHRVSFQTSSERKL 478

BLAST of CmoCh05G008310 vs. ExPASy Swiss-Prot
Match: P93293 (Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana OX=3702 GN=AtMg00300 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.6e-04
Identity = 26/81 (32.10%), Postives = 46/81 (56.79%), Query Frame = 0

Query: 3   VARGTKSRTLYTAGGCM--NRVVVAESASNSS-IWHNRLGHMSVKGMKMLAAGGVLEGLK 62
           + +G +  +LY   G +      +AE+A + + +WH+RL HMS +GM++L   G L+  K
Sbjct: 38  ILKGNRHDSLYILQGSVETGESNLAETAKDETRLWHSRLAHMSQRGMELLVKKGFLDSSK 97

Query: 63  SVDMSSYENCVMSKQKRVSFT 81
              +   E+C+  K  RV+F+
Sbjct: 98  VSSLKFCEDCIYGKTHRVNFS 118

BLAST of CmoCh05G008310 vs. ExPASy TrEMBL
Match: A0A4Y1RV75 (Toll-Interleukin-Resistance domain family protein OS=Prunus dulcis OX=3755 GN=Prudu_019642 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.5e-21
Identity = 86/290 (29.66%), Postives = 141/290 (48.62%), Query Frame = 0

Query: 1   MVVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKS 60
           M+VARG KS TLY   G    + +A      ++WH RLGHMS KGMK++ + G L GL+S
Sbjct: 142 MMVARGKKSGTLYMTAGARCSIAIAAGNEYPNMWHQRLGHMSEKGMKIMHSKGKLPGLES 201

Query: 61  VDMSSYENCVMSKQKRVSFTKTTRELKKD------------------TGTT--------- 120
           V++   E+C+  KQKRVSF  + R  KK+                   G T         
Sbjct: 202 VEIDMCEDCIYGKQKRVSFQTSGRTPKKERLELVHSDVWGPTTISSIVGNTTSRWKAMVE 261

Query: 121 KQVGVEVE-LQNNSHNDVVVDTQETPKTVAEKPEVKQVG-----VEVELLKDSHSDVVAD 180
            + G++++ L+ ++    + D +   + ++++ ++K +G     + +++ +D H  ++  
Sbjct: 262 NETGLKIKRLRTDNGGSDMDDIRRLKQQLSKEFDMKDLGPAKKILGMQITRDKHRGILQL 321

Query: 181 TQKTYETLV-------EKPEYHSESSLHYWLVTDEVERKPLDEDLQLEDTTKWEQAMDDG 240
           ++  Y   V       +     +  + H+ L  D+  +   + DL               
Sbjct: 322 SEAEYINRVLQRFNMGDTKPVSTPVASHFHLSNDQSPQTKEERDL--------------- 381

Query: 241 MFRLQKCVALSSVEAEYVAIAEDGKEMIWMTDYLEELGKKQREKILQIDS 251
           M +LQK V LS+ EAEYVA+ E  KEMIW+   L ELG KQ + +L  DS
Sbjct: 382 MAKLQKIVTLSTTEAEYVAVTEASKEMIWLQGLLTELGFKQEKNVLHSDS 416

BLAST of CmoCh05G008310 vs. ExPASy TrEMBL
Match: A0A2G3CAD5 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_16881 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.9e-21
Identity = 60/88 (68.18%), Postives = 64/88 (72.73%), Query Frame = 0

Query: 1   MVVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKS 60
           MVVARGTK  TLYT  GC+N  VVAE AS S +WHNRLGHMS K MKML A   LEG+K 
Sbjct: 526 MVVARGTKFGTLYTTAGCINMDVVAEGASGSCLWHNRLGHMSAKRMKMLVAKRALEGMKF 585

Query: 61  VDMSSYENCVMSKQKRVSFTKTTRELKK 89
           VDM   E+ VM KQKRVSFTKT R  KK
Sbjct: 586 VDMGLCESYVMGKQKRVSFTKTARAPKK 613

BLAST of CmoCh05G008310 vs. ExPASy TrEMBL
Match: A0A484MUU4 (gag_pre-integrs domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS34489 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-17
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 0

Query: 17  GCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKR 76
           GC+N    A+  S+SS+WH+RLGHMSVKGM+MLAA G LEGL SVDM   E+CVM KQKR
Sbjct: 236 GCINMAADADGVSSSSLWHDRLGHMSVKGMRMLAAKGTLEGLTSVDMGLCESCVMGKQKR 295

Query: 77  VSFTKTTRELKK 89
           VSFTKT RE KK
Sbjct: 296 VSFTKTPREPKK 307

BLAST of CmoCh05G008310 vs. ExPASy TrEMBL
Match: A0A438CET9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4205 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.5e-16
Identity = 83/262 (31.68%), Postives = 121/262 (46.18%), Query Frame = 0

Query: 2   VVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSV 61
           V+A G K+ TLY      + +VV ++++++S+WH+RLGHMS KGMKML + G L  LKS+
Sbjct: 359 VLAHGKKTGTLYMTSCPRDTIVVVDASTDTSLWHHRLGHMSEKGMKMLLSKGKLPELKSI 418

Query: 62  DMSSYENCVMSKQKRVSFTKTTRELKKDTGTTKQVGVEVELQNNS-----HNDVVVDTQE 121
           D    E+C++ KQK+VSF KT R    +    K   V  +L   S         +     
Sbjct: 419 DFDMCESCILGKQKKVSFLKTGRTHMAE----KLELVHTDLWGPSPVASLGGSGIEKINN 478

Query: 122 TPKTVAEKPEVKQVGVEVELL-KDSHSDVVADTQKTYETLVEKPEYHSESSLHYWLVTDE 181
             K ++++  +K +G   ++L      D V  T K  +    K         H   V  +
Sbjct: 479 LKKQLSKQFGMKDLGATKQILGMRIIRDKVNGTLKLSKLEYVKKVLSRPDIAHALRVVSK 538

Query: 182 VERKPLDEDLQLEDTTKWEQAMDDGMF-------RLQKCVALSSVEAEYVAIAEDGKEMI 241
              +P            WE    D  F       +       +  EAEY+A  E  KEMI
Sbjct: 539 FMSRP--------GKQHWEAGYVDADFAGDIDSRKSTTGFVFTLCEAEYIAATEARKEMI 598

Query: 242 WMTDYLEELGKKQREKILQIDS 251
           W+  +L+ELGKKQ   IL  DS
Sbjct: 599 WLHGFLDELGKKQEMGILHSDS 608

BLAST of CmoCh05G008310 vs. ExPASy TrEMBL
Match: A0A2G3B8H5 (IAA-amino acid hydrolase ILR1-like 1 OS=Capsicum chinense OX=80379 GN=BC332_28025 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-15
Identity = 48/87 (55.17%), Postives = 57/87 (65.52%), Query Frame = 0

Query: 1   MVVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKS 60
           MVVAR TKS TLYT  GC+N   +AE A  S +WHNRLG MS KGMKMLAA G LEGLKS
Sbjct: 564 MVVARDTKSETLYTTAGCINMAAIAEGAFGSCLWHNRLGRMSAKGMKMLAAKGALEGLKS 623

Query: 61  VDMSSYENCVMSKQKRVSFTKTTRELK 88
           +DM  Y      + K     +T+ ++K
Sbjct: 624 IDMGLYVFATFKRWKAEVENQTSLKIK 650

BLAST of CmoCh05G008310 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.2e-05
Identity = 26/81 (32.10%), Postives = 46/81 (56.79%), Query Frame = 0

Query: 3   VARGTKSRTLYTAGGCM--NRVVVAESASNSS-IWHNRLGHMSVKGMKMLAAGGVLEGLK 62
           + +G +  +LY   G +      +AE+A + + +WH+RL HMS +GM++L   G L+  K
Sbjct: 38  ILKGNRHDSLYILQGSVETGESNLAETAKDETRLWHSRLAHMSQRGMELLVKKGFLDSSK 97

Query: 63  SVDMSSYENCVMSKQKRVSFT 81
              +   E+C+  K  RV+F+
Sbjct: 98  VSSLKFCEDCIYGKTHRVNFS 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P109781.1e-0858.33Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P932931.6e-0432.10Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A4Y1RV754.5e-2129.66Toll-Interleukin-Resistance domain family protein OS=Prunus dulcis OX=3755 GN=Pr... [more]
A0A2G3CAD55.9e-2168.18Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_16881 PE=4 SV=1[more]
A0A484MUU41.0e-1769.44gag_pre-integrs domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCA... [more]
A0A438CET92.5e-1631.68Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A2G3B8H51.3e-1555.17IAA-amino acid hydrolase ILR1-like 1 OS=Capsicum chinense OX=80379 GN=BC332_2802... [more]
Match NameE-valueIdentityDescription
ATMG00300.11.2e-0532.10Gag-Pol-related retrotransposon family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 21..74
e-value: 1.6E-11
score: 43.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G008310.1CmoCh05G008310.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane