CmoCh05G007240 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G007240
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein S8
Location	Cmo_Chr05: 3766188 .. 3767862 (+)
RNA-Seq Expression	CmoCh05G007240
Synteny	CmoCh05G007240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATGTCAGATACAAATTCCCAGATTGTTTACTTATCTCGATGTTTTACGTTTTTTGTTTTTGTTAATCTGAGAAGACTTCATTTATAGGAATTTCTCGTGATTCTATGCACAAGAGGCGTGCCACTGGAGGCAAGAAGAAGGCTTGGAGGAAGAAGAGAAAGTAACTCTCTTCTTATATTTTGCTGCGTGCATATTGATCAATCAGTTTTCTTTCCATTTCTTTTCATTAATTGCTAATAGTTCTATGGTAAAGTTTGTGATTATCTTTCTTTGCCTGGTTTTCAGTACTAATCTGTAATTTTGTAGGCGAAATTTTTTATCTTTTGTTTTTAAGTGTTGTAGTTGTAGCAAGGTGTAAACTTTCATCTTTTGTAACTATCACAGAAGAAATTTTGTCAATCCAATTTACAACTTTCATCTGCTAATGTGTTTTGAAGCCCTCTTGCTATTGTTTCTTACCTCATTGTTTGTGAAGGTATGAGCTCGGAAGGCAACCTGCCAACACCAAGATATCCAGTGACAAGTCAATCAGGAGGATTAGAGTTCGCGGGGGCAATGTGAAGTGGCGTGCTTTTAGGCTTGATACTGGAAACTACTCTTGGGGTAGTGAGGCCGTGACTAGGAAGTCACGTATTCTTGATGTGGTCTACAATGCATCCAACAATGAGCTTGTTCGTACTCAAACCTTGGTGAAGAGTGCCATAGTTCAAGTTGATGCAGCACCATTTAAGCAGTGGTATCTTCAGCATTATGGAGTGGATATTGGACGGAAGAAGAAGACCGTAGCATCTGCTAAGAAGGAAGAGGTATAGGAAGATTTATAGCTCTAATGATTGATTCGGTTTACACAATTTCCAAGTACAAGTTTTTTTTATGTTTAATTAAGTTTCTGATCTAAAGTTATGGCATTTCTAACAGATACCATTTAGTTTAATGTGATACGACACTCCATCCATAACACAACTTGATTTGTATGGTTGATAGGAAGGTGATGCTCCAACTGAAGAGGTAAAGAAGAGTAACCATGTCCAGCGCAAAATAGAGAAACGTCAGCAGGACCGTAAGCTCGATCCGCATATCGAAGAACAATTCAGCAGTGGTCGATTGATGGCTTGTATCTCATCAAGACCAGGTCAATGTGGCCGAGCAGACGGGTAAGCATTATGACACTCTTAATGATTATAGATTCTATCGATGTTCTTTCCGACTTGGTTTCACACAATCATTGAAGGTGAGGAGAAGGATCTTTGGGTAATGTTACTGAGGTATTGCAAACTTTTTACAGATATATCTTGGAGGGCAAAGAGCTTGAATTCTATATGAAGAAGCTCCAAAGAAAGAAGGGAAAGGGAGCTGGTGCTGCATAAATTATTTTGTAATCGAGTTTTTCTTCAGCCCATGTTTCCTGTTCTTTTTATCTGTTCAAGCTATTTTGGTACTTCGATTTTGTTGGTAATAGTTGCTACGTTTTGACCTTTTCGTGATCACAACAGTTTGTTTATTAGCATGAGTTTTCAAGTTTCAAAACCTTTTGTCCTACTCCTTTTATGTAAGCGAGTTGGTTTGGTGTTTGATCTACAATTTTTACAGAAAAGTTCTAATGGATTAGGGCGAATGGCAAACACCTGGGTTTCTAGAAAAATAAAAAATGAAGTATTAGAAAAATTGG

mRNA sequence

ATGGGAATTTCTCGTGATTCTATGCACAAGAGGCGTGCCACTGGAGGCAAGAAGAAGGCTTGGAGGAAGAAGAGAAAGTATGAGCTCGGAAGGCAACCTGCCAACACCAAGATATCCAGTGACAAGTCAATCAGGAGGATTAGAGTTCGCGGGGGCAATGTGAAGTGGCGTGCTTTTAGGCTTGATACTGGAAACTACTCTTGGGGTAGTGAGGCCGTGACTAGGAAGTCACGTATTCTTGATGTGGTCTACAATGCATCCAACAATGAGCTTGTTCGTACTCAAACCTTGGTGAAGAGTGCCATAGTTCAAGTTGATGCAGCACCATTTAAGCAGTGGTATCTTCAGCATTATGGAGTGGATATTGGACGGAAGAAGAAGACCGTAGCATCTGCTAAGAAGGAAGAGGAAGGTGATGCTCCAACTGAAGAGGTAAAGAAGAGTAACCATGTCCAGCGCAAAATAGAGAAACGTCAGCAGGACCGTAAGCTCGATCCGCATATCGAAGAACAATTCAGCAGTGGTCGATTGATGGCTTGTATCTCATCAAGACCAGGTCAATGTGGCCGAGCAGACGGATATATCTTGGAGGGCAAAGAGCTTGAATTCTATATGAAGAAGCTCCAAAGAAAGAAGGGAAAGGGAGCTGGTGCTGCATAAATTATTTTGTAATCGAGTTTTTCTTCAGCCCATGTTTCCTGTTCTTTTTATCTGTTCAAGCTATTTTGGTACTTCGATTTTGTTGGTAATAGTTGCTACGTTTTGACCTTTTCGTGATCACAACAGTTTGTTTATTAGCATGAGTTTTCAAGTTTCAAAACCTTTTGTCCTACTCCTTTTATGTAAGCGAGTTGGTTTGGTGTTTGATCTACAATTTTTACAGAAAAGTTCTAATGGATTAGGGCGAATGGCAAACACCTGGGTTTCTAGAAAAATAAAAAATGAAGTATTAGAAAAATTGG

Coding sequence (CDS)

ATGGGAATTTCTCGTGATTCTATGCACAAGAGGCGTGCCACTGGAGGCAAGAAGAAGGCTTGGAGGAAGAAGAGAAAGTATGAGCTCGGAAGGCAACCTGCCAACACCAAGATATCCAGTGACAAGTCAATCAGGAGGATTAGAGTTCGCGGGGGCAATGTGAAGTGGCGTGCTTTTAGGCTTGATACTGGAAACTACTCTTGGGGTAGTGAGGCCGTGACTAGGAAGTCACGTATTCTTGATGTGGTCTACAATGCATCCAACAATGAGCTTGTTCGTACTCAAACCTTGGTGAAGAGTGCCATAGTTCAAGTTGATGCAGCACCATTTAAGCAGTGGTATCTTCAGCATTATGGAGTGGATATTGGACGGAAGAAGAAGACCGTAGCATCTGCTAAGAAGGAAGAGGAAGGTGATGCTCCAACTGAAGAGGTAAAGAAGAGTAACCATGTCCAGCGCAAAATAGAGAAACGTCAGCAGGACCGTAAGCTCGATCCGCATATCGAAGAACAATTCAGCAGTGGTCGATTGATGGCTTGTATCTCATCAAGACCAGGTCAATGTGGCCGAGCAGACGGATATATCTTGGAGGGCAAAGAGCTTGAATTCTATATGAAGAAGCTCCAAAGAAAGAAGGGAAAGGGAGCTGGTGCTGCATAA

Protein sequence

MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFRLDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA

Homology

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BLAST of CmoCh05G007240 vs. ExPASy Swiss-Prot
Match: P49199 (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS8 PE=2 SV=2)

HSP 1 Score: 374.0 bits (959), Expect = 1.1e-102
Identity = 193/221 (87.33%), Postives = 204/221 (92.31%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGK+KAWRKKRKYELGRQPANTK+SS+K++RR+RVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRK+RILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query: 121 DIGRKKKTVASAKKEEEG---DAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRL 180
           DIGRKKK  A AKK+ EG   +A TEE KKSNHV RK+EKRQQ R LD HIEEQF SGRL
Sbjct: 121 DIGRKKKAPA-AKKDAEGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRL 180

Query: 181 MACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGA 219
           +ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGA A
Sbjct: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGASA 220

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BLAST of CmoCh05G007240 vs. ExPASy Swiss-Prot
Match: O81361 (40S ribosomal protein S8 OS=Prunus armeniaca OX=36596 GN=RPS8 PE=2 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 2.0e-102
Identity = 192/221 (86.88%), Postives = 207/221 (93.67%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTK+SS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGN+SWGSEAVTRK+R+LDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTVASAKKE--EEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLM 180
           +IGRKKKT A+AKK+  EEG+A TEE KKSNHV  K+EKRQQ R LD HIEEQF  G+L+
Sbjct: 121 EIGRKKKT-AAAKKDTPEEGEATTEEAKKSNHVAIKLEKRQQGRTLDAHIEEQFGGGKLL 180

Query: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ACISSRPGQCG+ADG ILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ACISSRPGQCGKADGDILEGKELEFYMKKLQRKKGKGAGAA 220

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BLAST of CmoCh05G007240 vs. ExPASy Swiss-Prot
Match: Q08069 (40S ribosomal protein S8 OS=Zea mays OX=4577 GN=RPS8 PE=2 SV=2)

HSP 1 Score: 371.3 bits (952), Expect = 7.4e-102
Identity = 189/221 (85.52%), Postives = 202/221 (91.40%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGK+KAWRKKRKYELGRQPANTK+SS+K++RR+RVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRK+RILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query: 121 DIGRKKKTVASAKKEEEG---DAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRL 180
           DIGRKKKT A+ K   EG   +A  EE KKSNHV RK+EKR++ R LDPHIEEQF SGRL
Sbjct: 121 DIGRKKKTPAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRL 180

Query: 181 MACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGA 219
           +ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK A A
Sbjct: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKSAVA 221

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BLAST of CmoCh05G007240 vs. ExPASy Swiss-Prot
Match: Q9FIF3 (40S ribosomal protein S8-2 OS=Arabidopsis thaliana OX=3702 GN=RPS8B PE=2 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 1.9e-97
Identity = 183/219 (83.56%), Postives = 197/219 (89.95%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYELGRQPANTK+SS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGN+SWGSEAVTRK+RILDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGV
Sbjct: 61  LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGV 120

Query: 121 DIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKK  A           TEEVKKSNHVQRK+E RQ+ R LD H+EEQFSSGRL+AC
Sbjct: 121 DIGRKKKGEA---------VTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           I+SRPGQCGRADGYILEGKELEFYMKKLQ+KKGK AGAA
Sbjct: 181 IASRPGQCGRADGYILEGKELEFYMKKLQKKKGKNAGAA 210

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BLAST of CmoCh05G007240 vs. ExPASy Swiss-Prot
Match: Q93VG5 (40S ribosomal protein S8-1 OS=Arabidopsis thaliana OX=3702 GN=RPS8A PE=1 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 2.5e-97
Identity = 179/221 (81.00%), Postives = 202/221 (91.40%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYE+GRQPANTK+SS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA TRK+R+LDVVYNASNNELVRT+TLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGV 120

Query: 121 DIGRKKKTVASAKKE-EEGD----APTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSG 180
           ++GRKKK+ +S KK+ EEG+    A  EEVKKSNH+ RKI  RQ+ R LD HIE+QF+SG
Sbjct: 121 ELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASG 180

Query: 181 RLMACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGA 217
           RL+ACISSRPGQCGRADGYILEGKELEFYMKK+Q+KKGKGA
Sbjct: 181 RLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGKGA 221

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BLAST of CmoCh05G007240 vs. ExPASy TrEMBL
Match: A0A6J1K537 (40S ribosomal protein S8 OS=Cucurbita maxima OX=3661 GN=LOC111492371 PE=3 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 8.5e-117
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

[Close]

BLAST of CmoCh05G007240 vs. ExPASy TrEMBL
Match: A0A6J1EP23 (40S ribosomal protein S8 OS=Cucurbita moschata OX=3662 GN=LOC111436251 PE=3 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 8.5e-117
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

[Close]

BLAST of CmoCh05G007240 vs. ExPASy TrEMBL
Match: A0A6J1FH17 (40S ribosomal protein S8 OS=Cucurbita moschata OX=3662 GN=LOC111443921 PE=3 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 5.2e-114
Identity = 214/219 (97.72%), Postives = 216/219 (98.63%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKKT AS+KKEEE DA TEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRKKKTAASSKKEEEADAATEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGA+
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAS 219

[Close]

BLAST of CmoCh05G007240 vs. ExPASy TrEMBL
Match: A0A5D3BT12 (40S ribosomal protein S8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00420 PE=3 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 6.7e-114
Identity = 214/219 (97.72%), Postives = 216/219 (98.63%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRR TGGKKKAWRKKRKYELGRQPANTK+SSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRETGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRK+RILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKKT ASAKKEEEGDA TEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRKKKTSASAKKEEEGDAGTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

[Close]

BLAST of CmoCh05G007240 vs. ExPASy TrEMBL
Match: A0A1S3BRZ4 (40S ribosomal protein S8 OS=Cucumis melo OX=3656 GN=LOC103492879 PE=3 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 6.7e-114
Identity = 214/219 (97.72%), Postives = 216/219 (98.63%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRR TGGKKKAWRKKRKYELGRQPANTK+SSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRETGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRK+RILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKKT ASAKKEEEGDA TEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRKKKTSASAKKEEEGDAGTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

[Close]

BLAST of CmoCh05G007240 vs. NCBI nr
Match: XP_022929761.1 (40S ribosomal protein S8-like [Cucurbita moschata] >XP_022929762.1 40S ribosomal protein S8-like [Cucurbita moschata] >XP_022997461.1 40S ribosomal protein S8-like [Cucurbita maxima] >XP_022997462.1 40S ribosomal protein S8-like [Cucurbita maxima] >XP_023547179.1 40S ribosomal protein S8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 429.5 bits (1103), Expect = 1.8e-116
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

[Close]

BLAST of CmoCh05G007240 vs. NCBI nr
Match: KAG6598870.1 (40S ribosomal protein S8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 429.1 bits (1102), Expect = 2.3e-116
Identity = 218/219 (99.54%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKKT+ASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRKKKTIASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

[Close]

BLAST of CmoCh05G007240 vs. NCBI nr
Match: KAG7029811.1 (40S ribosomal protein S8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 427.9 bits (1099), Expect = 5.1e-116
Identity = 218/219 (99.54%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           +GISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR
Sbjct: 22  IGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 81

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 82  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 141

Query: 121 DIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 142 DIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 201

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 202 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 240

[Close]

BLAST of CmoCh05G007240 vs. NCBI nr
Match: XP_038891236.1 (40S ribosomal protein S8 [Benincasa hispida])

HSP 1 Score: 420.6 bits (1080), Expect = 8.2e-114
Identity = 213/219 (97.26%), Postives = 217/219 (99.09%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTK+SSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRK+RILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKKT+ASAKK+EEGDA TEEVKKSNHVQRKIEKRQQDRKLDPHIEEQF SGRLMAC
Sbjct: 121 DIGRKKKTLASAKKDEEGDAATEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFGSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

[Close]

BLAST of CmoCh05G007240 vs. NCBI nr
Match: XP_022937545.1 (40S ribosomal protein S8-like [Cucurbita moschata])

HSP 1 Score: 420.2 bits (1079), Expect = 1.1e-113
Identity = 214/219 (97.72%), Postives = 216/219 (98.63%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKKT AS+KKEEE DA TEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRKKKTAASSKKEEEADAATEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGA+
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAS 219

[Close]

BLAST of CmoCh05G007240 vs. TAIR 10
Match: AT5G59240.1 (Ribosomal protein S8e family protein )

HSP 1 Score: 356.7 bits (914), Expect = 1.3e-98
Identity = 183/219 (83.56%), Postives = 197/219 (89.95%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYELGRQPANTK+SS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGN+SWGSEAVTRK+RILDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGV
Sbjct: 61  LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGV 120

Query: 121 DIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRKKK  A           TEEVKKSNHVQRK+E RQ+ R LD H+EEQFSSGRL+AC
Sbjct: 121 DIGRKKKGEA---------VTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
           I+SRPGQCGRADGYILEGKELEFYMKKLQ+KKGK AGAA
Sbjct: 181 IASRPGQCGRADGYILEGKELEFYMKKLQKKKGKNAGAA 210

[Close]

BLAST of CmoCh05G007240 vs. TAIR 10
Match: AT5G20290.1 (Ribosomal protein S8e family protein )

HSP 1 Score: 356.3 bits (913), Expect = 1.8e-98
Identity = 179/221 (81.00%), Postives = 202/221 (91.40%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYE+GRQPANTK+SS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA TRK+R+LDVVYNASNNELVRT+TLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGV 120

Query: 121 DIGRKKKTVASAKKE-EEGD----APTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSG 180
           ++GRKKK+ +S KK+ EEG+    A  EEVKKSNH+ RKI  RQ+ R LD HIE+QF+SG
Sbjct: 121 ELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASG 180

Query: 181 RLMACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGA 217
           RL+ACISSRPGQCGRADGYILEGKELEFYMKK+Q+KKGKGA
Sbjct: 181 RLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGKGA 221

The following BLAST results are available for this feature:

BLAST of CmoCh05G007240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49199	1.1e-102	87.33	40S ribosomal protein S8 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS8 PE=2 S...	[more]
O81361	2.0e-102	86.88	40S ribosomal protein S8 OS=Prunus armeniaca OX=36596 GN=RPS8 PE=2 SV=1	[more]
Q08069	7.4e-102	85.52	40S ribosomal protein S8 OS=Zea mays OX=4577 GN=RPS8 PE=2 SV=2	[more]
Q9FIF3	1.9e-97	83.56	40S ribosomal protein S8-2 OS=Arabidopsis thaliana OX=3702 GN=RPS8B PE=2 SV=1	[more]
Q93VG5	2.5e-97	81.00	40S ribosomal protein S8-1 OS=Arabidopsis thaliana OX=3702 GN=RPS8A PE=1 SV=1	[more]

BLAST of CmoCh05G007240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K537	8.5e-117	100.00	40S ribosomal protein S8 OS=Cucurbita maxima OX=3661 GN=LOC111492371 PE=3 SV=1	[more]
A0A6J1EP23	8.5e-117	100.00	40S ribosomal protein S8 OS=Cucurbita moschata OX=3662 GN=LOC111436251 PE=3 SV=1	[more]
A0A6J1FH17	5.2e-114	97.72	40S ribosomal protein S8 OS=Cucurbita moschata OX=3662 GN=LOC111443921 PE=3 SV=1	[more]
A0A5D3BT12	6.7e-114	97.72	40S ribosomal protein S8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3BRZ4	6.7e-114	97.72	40S ribosomal protein S8 OS=Cucumis melo OX=3656 GN=LOC103492879 PE=3 SV=1	[more]

BLAST of CmoCh05G007240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929761.1	1.8e-116	100.00	40S ribosomal protein S8-like [Cucurbita moschata] >XP_022929762.1 40S ribosomal...	[more]
KAG6598870.1	2.3e-116	99.54	40S ribosomal protein S8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7029811.1	5.1e-116	99.54	40S ribosomal protein S8, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038891236.1	8.2e-114	97.26	40S ribosomal protein S8 [Benincasa hispida]	[more]
XP_022937545.1	1.1e-113	97.72	40S ribosomal protein S8-like [Cucurbita moschata]	[more]

BLAST of CmoCh05G007240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59240.1	1.3e-98	83.56	Ribosomal protein S8e family protein	[more]
AT5G20290.1	1.8e-98	81.00	Ribosomal protein S8e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022309	Ribosomal protein S8e/ribosomal biogenesis NSA2	PFAM	PF01201	Ribosomal_S8e	coord: 1..196 e-value: 2.6E-55 score: 186.4
IPR001047	Ribosomal protein S8e	TIGRFAM	TIGR00307	TIGR00307	coord: 1..198 e-value: 1.8E-46 score: 155.4
IPR001047	Ribosomal protein S8e	PANTHER	PTHR10394	40S RIBOSOMAL PROTEIN S8	coord: 1..217
None	No IPR available	GENE3D	3.10.290.70		coord: 32..159 e-value: 3.8E-39 score: 135.5 coord: 160..214 e-value: 1.2E-17 score: 66.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..167
None	No IPR available	PANTHER	PTHR10394:SF18	40S RIBOSOMAL PROTEIN S8	coord: 1..217
None	No IPR available	CDD	cd11380	Ribosomal_S8e_like	coord: 5..196 e-value: 1.16045E-57 score: 176.941
IPR018283	Ribosomal protein S8e, conserved site	PROSITE	PS01193	RIBOSOMAL_S8E	coord: 11..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G007240.1	CmoCh05G007240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome