CmoCh04G026600 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G026600
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	cyclin-dependent protein kinase inhibitor SMR1-like
Location	Cmo_Chr04: 19359642 .. 19360016 (+)
RNA-Seq Expression	CmoCh04G026600
Synteny	CmoCh04G026600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCATGGACCTTGAATTTCCTGAAAATCTCCCTAAAATCCGCCTTCCTTTACAGGTTCGATCGCCTCCCAAGCCTTCCAATTCCATCAACATCCCTTCCTCCGTCTCCGATCACGACGGCGCCGACCTTGACCACCGCGGCTGCCGGACGCCGACCTCTGCTGAGCACAAGATTCCGAAGATCATCAGCTGTCCTGGAGCGCCGAGGAAGCCGAAGCGTCCTCCCGTACCTTGCAAGAGGAAGTTGACCATGGAGCTCAAATTCTTTGAGTTCGTGAATCAAGAAGAAGTCGATAATTTCTTCCGATCCGCTTACGATCTCGAAGCTTCTTCCACGGCGCCGTCGAAGAGGAGCTGCTGCCGGTCAGCCTGA

mRNA sequence

ATGTCCATGGACCTTGAATTTCCTGAAAATCTCCCTAAAATCCGCCTTCCTTTACAGGTTCGATCGCCTCCCAAGCCTTCCAATTCCATCAACATCCCTTCCTCCGTCTCCGATCACGACGGCGCCGACCTTGACCACCGCGGCTGCCGGACGCCGACCTCTGCTGAGCACAAGATTCCGAAGATCATCAGCTGTCCTGGAGCGCCGAGGAAGCCGAAGCGTCCTCCCGTACCTTGCAAGAGGAAGTTGACCATGGAGCTCAAATTCTTTGAGTTCGTGAATCAAGAAGAAGTCGATAATTTCTTCCGATCCGCTTACGATCTCGAAGCTTCTTCCACGGCGCCGTCGAAGAGGAGCTGCTGCCGGTCAGCCTGA

Coding sequence (CDS)

ATGTCCATGGACCTTGAATTTCCTGAAAATCTCCCTAAAATCCGCCTTCCTTTACAGGTTCGATCGCCTCCCAAGCCTTCCAATTCCATCAACATCCCTTCCTCCGTCTCCGATCACGACGGCGCCGACCTTGACCACCGCGGCTGCCGGACGCCGACCTCTGCTGAGCACAAGATTCCGAAGATCATCAGCTGTCCTGGAGCGCCGAGGAAGCCGAAGCGTCCTCCCGTACCTTGCAAGAGGAAGTTGACCATGGAGCTCAAATTCTTTGAGTTCGTGAATCAAGAAGAAGTCGATAATTTCTTCCGATCCGCTTACGATCTCGAAGCTTCTTCCACGGCGCCGTCGAAGAGGAGCTGCTGCCGGTCAGCCTGA

Protein sequence

MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIPKIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSTAPSKRSCCRSA

Homology

[Close]

BLAST of CmoCh04G026600 vs. ExPASy Swiss-Prot
Match: Q9LPP4 (Cyclin-dependent protein kinase inhibitor SMR1 OS=Arabidopsis thaliana OX=3702 GN=SMR1 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.8e-10
Identity = 51/132 (38.64%), Postives = 66/132 (50.00%), Query Frame = 0


Query: 3   MDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIPKI 62
           MDLE  ++L K   P  ++   K S       +  D    D D   C TPTS EHKIP +
Sbjct: 1   MDLELLQDLSKFNFPTPIKIRSKTS------KTKKDEGDDDEDDLRCSTPTSQEHKIPAV 60

Query: 63  I-SCPGAPRKPKRPPV-----------PCKRKL---TMELKFFEFVNQEEVDNFFRSAYD 120
           + S P  PRKP+ PP             CKRKL   T E+     +N+EE+D FF S Y+
Sbjct: 61  VDSPPPPPRKPRPPPSAPSATAALMIRSCKRKLLVSTCEI----IMNREEIDRFFSSVYN 120

[Close]

BLAST of CmoCh04G026600 vs. ExPASy Swiss-Prot
Match: Q9LZ78 (Cyclin-dependent protein kinase inhibitor SIM OS=Arabidopsis thaliana OX=3702 GN=SIM PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.9e-08
Identity = 47/140 (33.57%), Postives = 66/140 (47.14%), Query Frame = 0


Query: 3   MDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIPKI 62
           MDL+  ++LP +  P  ++              +  +   D D  GC TPTS++HKIP  
Sbjct: 1   MDLDLIQDLPILNFPPAIK--------------IRANTNRDDDGGGCTTPTSSDHKIPPT 60

Query: 63  ISC--PGAPRKPKRPPVP-------CKRKLTMELKFFE-FVNQEEVDNFFRSAYD-LEAS 122
            +   P  P+KP+ P  P       CKRKL   L  +E  VN++E++ FF S Y+   AS
Sbjct: 61  TATTPPPPPQKPRPPSTPSSLGIRSCKRKLMTSLSKYEIIVNKDEIERFFSSVYNQTMAS 120

[Close]

BLAST of CmoCh04G026600 vs. ExPASy Swiss-Prot
Match: Q9LZ60 (Cyclin-dependent protein kinase inhibitor SMR3 OS=Arabidopsis thaliana OX=3702 GN=SMR3 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.3e-05
Identity = 35/80 (43.75%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 9  ENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADL-DHRGCRTPTSAEHKIP--KIISC 68
          E++ KIRLP +          ++IP   SDH+   + +  GC+TPTS++HKIP  K   C
Sbjct: 13 EDVEKIRLPTR--------PELDIPD--SDHEDPTVNEEEGCKTPTSSDHKIPEVKYTLC 72

Query: 69 PGAPRKPK-RPPVPCKRKLT 85
          P APRKPK       KRKLT
Sbjct: 73 PPAPRKPKPNRSSGTKRKLT 82

[Close]

BLAST of CmoCh04G026600 vs. ExPASy Swiss-Prot
Match: Q9SGE2 (Cyclin-dependent protein kinase inhibitor SMR2 OS=Arabidopsis thaliana OX=3702 GN=SMR2 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.1e-04
Identity = 24/55 (43.64%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 51  TPTSAEHKIPKIISCPGAPRK-PKRPPVPCKRKLTMELKFFEF--VNQEEVDNFF 103
           TPTS++HKIP++ +CP  PRK P+   +  K +L+ +L+FFE   V  +EV+  F
Sbjct: 41  TPTSSDHKIPEVETCPPPPRKRPREISLTKKTRLSKDLRFFEATDVGSQEVETLF 95

[Close]

BLAST of CmoCh04G026600 vs. ExPASy TrEMBL
Match: A0A6J1E540 (cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucurbita moschata OX=3662 GN=LOC111430821 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 6.2e-64
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIP 60
           MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIP
Sbjct: 1   MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIP 60

Query: 61  KIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSTAPSKRSC 120
           KIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSTAPSKRSC
Sbjct: 61  KIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSTAPSKRSC 120

Query: 121 CRSA 125
           CRSA
Sbjct: 121 CRSA 124

[Close]

BLAST of CmoCh04G026600 vs. ExPASy TrEMBL
Match: A0A6J1JIW3 (cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucurbita maxima OX=3661 GN=LOC111487335 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 8.9e-63
Identity = 122/124 (98.39%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIP 60
           MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIP
Sbjct: 1   MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIP 60

Query: 61  KIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSTAPSKRSC 120
           KIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASS AP KRSC
Sbjct: 61  KIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSAAPPKRSC 120

Query: 121 CRSA 125
           CRSA
Sbjct: 121 CRSA 124

[Close]

BLAST of CmoCh04G026600 vs. ExPASy TrEMBL
Match: A0A5A7UMQ0 (Cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold371G00200 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.3e-50
Identity = 106/122 (86.89%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 1   MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIP 60
           MSMDLEFP+NLPKIRLPLQVRSPPKPS S NI  S SDHD +DLD R CRTPTSAEHKIP
Sbjct: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIIPS-SDHD-SDLDRRSCRTPTSAEHKIP 60

Query: 61  KIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSTAPSKRSC 120
           KI+SCPGAP+KPKRPPVPCKRKLTMELKFFE VNQEEVDNFFRSAYDLE+SSTAP KR+C
Sbjct: 61  KILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLESSSTAPPKRNC 120

Query: 121 CR 123
           CR
Sbjct: 121 CR 120

[Close]

BLAST of CmoCh04G026600 vs. ExPASy TrEMBL
Match: A0A1S3C3L4 (cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucumis melo OX=3656 GN=LOC103496472 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.3e-50
Identity = 106/122 (86.89%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 1   MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIP 60
           MSMDLEFP+NLPKIRLPLQVRSPPKPS S NI  S SDHD +DLD R CRTPTSAEHKIP
Sbjct: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIIPS-SDHD-SDLDRRSCRTPTSAEHKIP 60

Query: 61  KIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSTAPSKRSC 120
           KI+SCPGAP+KPKRPPVPCKRKLTMELKFFE VNQEEVDNFFRSAYDLE+SSTAP KR+C
Sbjct: 61  KILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLESSSTAPPKRNC 120

Query: 121 CR 123
           CR
Sbjct: 121 CR 120

[Close]

BLAST of CmoCh04G026600 vs. ExPASy TrEMBL
Match: A0A0A0LSQ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G384460 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.3e-50
Identity = 106/122 (86.89%), Postives = 111/122 (90.98%), Query Frame = 0


Query: 1   MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIP 60
           MSMDLEFP+NLPKIRLPLQVRSPPKPS S NI  S SDHD +DLD R CRTPTSAEHKIP
Sbjct: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIIPS-SDHD-SDLDRRSCRTPTSAEHKIP 60

Query: 61  KIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSTAPSKRSC 120
           KI+SCPGAP+KPKRPPVPCKRKLTMELKFFE VNQEEVDNFFRSAYDLE+S TAP KRSC
Sbjct: 61  KILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLESSPTAPPKRSC 120

Query: 121 CR 123
           CR
Sbjct: 121 CR 120

[Close]

BLAST of CmoCh04G026600 vs. NCBI nr
Match: XP_022923009.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita moschata] >KAG6602281.1 hypothetical protein SDJN03_07514, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032961.1 hypothetical protein SDJN02_07012, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 253.1 bits (645), Expect = 1.3e-63
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIP 60
           MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIP
Sbjct: 1   MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIP 60

Query: 61  KIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSTAPSKRSC 120
           KIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSTAPSKRSC
Sbjct: 61  KIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSTAPSKRSC 120

Query: 121 CRSA 125
           CRSA
Sbjct: 121 CRSA 124

[Close]

BLAST of CmoCh04G026600 vs. NCBI nr
Match: XP_023521119.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251.1 bits (640), Expect = 4.8e-63
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 1   MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIP 60
           MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIP
Sbjct: 1   MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIP 60

Query: 61  KIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSTAPSKRSC 120
           KIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSTAP KRSC
Sbjct: 61  KIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSTAPPKRSC 120

Query: 121 CRSA 125
           CRSA
Sbjct: 121 CRSA 124

[Close]

BLAST of CmoCh04G026600 vs. NCBI nr
Match: XP_022990487.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita maxima])

HSP 1 Score: 249.2 bits (635), Expect = 1.8e-62
Identity = 122/124 (98.39%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIP 60
           MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIP
Sbjct: 1   MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIP 60

Query: 61  KIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSTAPSKRSC 120
           KIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASS AP KRSC
Sbjct: 61  KIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSAAPPKRSC 120

Query: 121 CRSA 125
           CRSA
Sbjct: 121 CRSA 124

[Close]

BLAST of CmoCh04G026600 vs. NCBI nr
Match: XP_038884240.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Benincasa hispida])

HSP 1 Score: 218.8 bits (556), Expect = 2.7e-53
Identity = 109/123 (88.62%), Postives = 114/123 (92.68%), Query Frame = 0


Query: 1   MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIP 60
           MSMDLEFP+NLPKIRLPLQVRSPPKPS S NIPSS SD D +DLD R CRTPTSAEHKIP
Sbjct: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIPSSASDRD-SDLDRRSCRTPTSAEHKIP 60

Query: 61  KIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSTAPSKRSC 120
           KI+SCPGAP+KPKRPPVPCKRKLTMELKFFE VNQEEVDNFFRSAYDLEASSTAP KR+C
Sbjct: 61  KILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLEASSTAPPKRTC 120

Query: 121 CRS 124
           CRS
Sbjct: 121 CRS 122

[Close]

BLAST of CmoCh04G026600 vs. NCBI nr
Match: XP_008456553.1 (PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo] >KAA0057132.1 cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo var. makuwa] >TYJ97113.1 cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo var. makuwa])

HSP 1 Score: 208.8 bits (530), Expect = 2.8e-50
Identity = 106/122 (86.89%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 1   MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIP 60
           MSMDLEFP+NLPKIRLPLQVRSPPKPS S NI  S SDHD +DLD R CRTPTSAEHKIP
Sbjct: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIIPS-SDHD-SDLDRRSCRTPTSAEHKIP 60

Query: 61  KIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSTAPSKRSC 120
           KI+SCPGAP+KPKRPPVPCKRKLTMELKFFE VNQEEVDNFFRSAYDLE+SSTAP KR+C
Sbjct: 61  KILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLESSSTAPPKRNC 120

Query: 121 CR 123
           CR
Sbjct: 121 CR 120

[Close]

BLAST of CmoCh04G026600 vs. TAIR 10
Match: AT3G10525.1 (LOSS OF GIANT CELLS FROM ORGANS )

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-11
Identity = 51/132 (38.64%), Postives = 66/132 (50.00%), Query Frame = 0


Query: 3   MDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIPKI 62
           MDLE  ++L K   P  ++   K S       +  D    D D   C TPTS EHKIP +
Sbjct: 1   MDLELLQDLSKFNFPTPIKIRSKTS------KTKKDEGDDDEDDLRCSTPTSQEHKIPAV 60

Query: 63  I-SCPGAPRKPKRPPV-----------PCKRKL---TMELKFFEFVNQEEVDNFFRSAYD 120
           + S P  PRKP+ PP             CKRKL   T E+     +N+EE+D FF S Y+
Sbjct: 61  VDSPPPPPRKPRPPPSAPSATAALMIRSCKRKLLVSTCEI----IMNREEIDRFFSSVYN 120

[Close]

BLAST of CmoCh04G026600 vs. TAIR 10
Match: AT5G04470.1 (cyclin-dependent protein kinase inhibitors )

HSP 1 Score: 58.2 bits (139), Expect = 5.6e-09
Identity = 47/140 (33.57%), Postives = 66/140 (47.14%), Query Frame = 0


Query: 3   MDLEFPENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADLDHRGCRTPTSAEHKIPKI 62
           MDL+  ++LP +  P  ++              +  +   D D  GC TPTS++HKIP  
Sbjct: 1   MDLDLIQDLPILNFPPAIK--------------IRANTNRDDDGGGCTTPTSSDHKIPPT 60

Query: 63  ISC--PGAPRKPKRPPVP-------CKRKLTMELKFFE-FVNQEEVDNFFRSAYD-LEAS 122
            +   P  P+KP+ P  P       CKRKL   L  +E  VN++E++ FF S Y+   AS
Sbjct: 61  TATTPPPPPQKPRPPSTPSSLGIRSCKRKLMTSLSKYEIIVNKDEIERFFSSVYNQTMAS 120

[Close]

BLAST of CmoCh04G026600 vs. TAIR 10
Match: AT5G02420.1 (unknown protein; Has 90 Blast hits to 90 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 4.4e-06
Identity = 35/80 (43.75%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 9  ENLPKIRLPLQVRSPPKPSNSINIPSSVSDHDGADL-DHRGCRTPTSAEHKIP--KIISC 68
          E++ KIRLP +          ++IP   SDH+   + +  GC+TPTS++HKIP  K   C
Sbjct: 13 EDVEKIRLPTR--------PELDIPD--SDHEDPTVNEEEGCKTPTSSDHKIPEVKYTLC 72

Query: 69 PGAPRKPK-RPPVPCKRKLT 85
          P APRKPK       KRKLT
Sbjct: 73 PPAPRKPKPNRSSGTKRKLT 82

[Close]

BLAST of CmoCh04G026600 vs. TAIR 10
Match: AT1G08180.1 (unknown protein; Has 53 Blast hits to 53 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 2.9e-05
Identity = 24/55 (43.64%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 51  TPTSAEHKIPKIISCPGAPRK-PKRPPVPCKRKLTMELKFFEF--VNQEEVDNFF 103
           TPTS++HKIP++ +CP  PRK P+   +  K +L+ +L+FFE   V  +EV+  F
Sbjct: 41  TPTSSDHKIPEVETCPPPPRKRPREISLTKKTRLSKDLRFFEATDVGSQEVETLF 95

The following BLAST results are available for this feature:

BLAST of CmoCh04G026600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LPP4	3.8e-10	38.64	Cyclin-dependent protein kinase inhibitor SMR1 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LZ78	7.9e-08	33.57	Cyclin-dependent protein kinase inhibitor SIM OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9LZ60	6.3e-05	43.75	Cyclin-dependent protein kinase inhibitor SMR3 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9SGE2	4.1e-04	43.64	Cyclin-dependent protein kinase inhibitor SMR2 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of CmoCh04G026600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E540	6.2e-64	100.00	cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucurbita moschata OX=366...	[more]
A0A6J1JIW3	8.9e-63	98.39	cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A5A7UMQ0	1.3e-50	86.89	Cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucumis melo var. makuwa ...	[more]
A0A1S3C3L4	1.3e-50	86.89	cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucumis melo OX=3656 GN=L...	[more]
A0A0A0LSQ6	2.3e-50	86.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G384460 PE=4 SV=1	[more]

BLAST of CmoCh04G026600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923009.1	1.3e-63	100.00	cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita moschata] >KAG660...	[more]
XP_023521119.1	4.8e-63	99.19	cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022990487.1	1.8e-62	98.39	cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita maxima]	[more]
XP_038884240.1	2.7e-53	88.62	cyclin-dependent protein kinase inhibitor SMR1-like [Benincasa hispida]	[more]
XP_008456553.1	2.8e-50	86.89	PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo] >K...	[more]

BLAST of CmoCh04G026600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10525.1	2.7e-11	38.64	LOSS OF GIANT CELLS FROM ORGANS	[more]
AT5G04470.1	5.6e-09	33.57	cyclin-dependent protein kinase inhibitors	[more]
AT5G02420.1	4.4e-06	43.75	unknown protein; Has 90 Blast hits to 90 proteins in 10 species: Archae - 0; Bac...	[more]
AT1G08180.1	2.9e-05	43.64	unknown protein; Has 53 Blast hits to 53 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..54
None	No IPR available	PANTHER	PTHR33142:SF55	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR14	coord: 3..111
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 3..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G026600.1	CmoCh04G026600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus