CmoCh04G026180 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G026180
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionSHSP domain-containing protein
LocationCmo_Chr04: 19079629 .. 19080652 (-)
RNA-Seq ExpressionCmoCh04G026180
SyntenyCmoCh04G026180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCATTACACAAAATTAAATTATTTGAAGTTTTGAAGATTTTCAATGTCGAGGCAAGTATTTGGTTGGGATGAAATGGATCAACAAAAGGAGAATTACACTCCAAAAGTGGATTGGAAAGAGAGAAAGGAAACAAATAAAGAGTACTATGATATGATGATCGATTTTTCGGGTAATTTCTAACTTCGTTCTTATTTAATTTCATGTTAAAACGCTACTTTGATCTTCGTACGTTATGTTTAAACGTCAAATTTTTGTTTTTGAATATTATCTTGTGATCTGTGAATTGTTTTTTAGGTTGTTCAAGGAATCAACTGCAAATCTCGATGAGTAGAGAATTAAAGACTATTGATATTATGACAACAAAAAAAGAAGGATACAATATCGTTCGTGTCAACGAATCCATACCAATTAAGAACGAGTGCTCGTTGGATGATGTCTATGCATCGTTTGTTAAAAATGATCTTATTATTACATTCCCGAAGAAAACAAATGTTTAATTTCCATCCAAATCGAGATTTACTTTCTTAATGAATAAACACGGACTTCCTAGGTTTGTGTAAAACACTATATATACATACATATGTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATACGTACACGTGCTATGTATTATTTTTATCAAATTTGATTATGTTATGGTCGGTGATATGTGAGAAACTCGAGTAGTTTGGAGTACGTGAAATCTCATGTGAATCAAGAAGGACCATCTTGCAAAGCTAAACACTTATGGTGACCGATGGTCTTCAGAACAGTAGGAAGAGGTAAGGACTCTGACCGTGTGCCTGTTGAAGAATGAGTCGGTGACTCATAAGCAGTGGCTTGGTTAAGGGAACCTACTGTGAGAAACTACAAAATATATATATCTATATATATATATATATATGTAAATGTTTTCTATTGGCTTCAGATTCTCAAGCTCGTCTTGAGTTGCTTTTACGAGTGAAAATAATACGGAGTCTTTCAA

mRNA sequence

ATTCATTACACAAAATTAAATTATTTGAAGTTTTGAAGATTTTCAATGTCGAGGCAAGTATTTGGTTGGGATGAAATGGATCAACAAAAGGAGAATTACACTCCAAAAGTGGATTGGAAAGAGAGAAAGGAAACAAATAAAGAGTACTATGATATGATGATCGATTTTTCGGGTTGTTCAAGGAATCAACTGCAAATCTCGATGAGTAGAGAATTAAAGACTATTGATATTATGACAACAAAAAAAGAAGGATACAATATCGTTCGTGTCAACGAATCCATACCAATTAAGAACGAGTGCTCGTTGGATGATGTCTATGCATCGTTTGTTAAAAATGATCTTATTATTACATTCCCGAAGAAAACAAATGTTTAATTTCCATCCAAATCGAGATTTACTTTCTTAATGAATAAACACGGACTTCCTAGGTTTGTGTAAAACACTATATATACATACGTACACGTGCTATGTATTATTTTTATCAAATTTGATTATGTTATGGTCGGTGATATGTGAGAAACTCGAGTAGTTTGGAGTACGTGAAATCTCATGTGAATCAAGAAGGACCATCTTGCAAAGCTAAACACTTATGGTGACCGATGGTCTTCAGAACAGTAGGAAGAGGTAAGGACTCTGACCGTGTGCCTGTTGAAGAATGAGTCGGTGACTCATAAGCAGTGGCTTGGTTAAGGGAACCTACTGTGAGAAACTACAAAATATATATATCTATATATATATATATATATGTAAATGTTTTCTATTGGCTTCAGATTCTCAAGCTCGTCTTGAGTTGCTTTTACGAGTGAAAATAATACGGAGTCTTTCAA

Coding sequence (CDS)

ATGTCGAGGCAAGTATTTGGTTGGGATGAAATGGATCAACAAAAGGAGAATTACACTCCAAAAGTGGATTGGAAAGAGAGAAAGGAAACAAATAAAGAGTACTATGATATGATGATCGATTTTTCGGGTTGTTCAAGGAATCAACTGCAAATCTCGATGAGTAGAGAATTAAAGACTATTGATATTATGACAACAAAAAAAGAAGGATACAATATCGTTCGTGTCAACGAATCCATACCAATTAAGAACGAGTGCTCGTTGGATGATGTCTATGCATCGTTTGTTAAAAATGATCTTATTATTACATTCCCGAAGAAAACAAATGTTTAA

Protein sequence

MSRQVFGWDEMDQQKENYTPKVDWKERKETNKEYYDMMIDFSGCSRNQLQISMSRELKTIDIMTTKKEGYNIVRVNESIPIKNECSLDDVYASFVKNDLIITFPKKTNV
Homology
BLAST of CmoCh04G026180 vs. ExPASy TrEMBL
Match: A0A6J1FGX8 (uncharacterized protein LOC111445297 OS=Cucurbita moschata OX=3662 GN=LOC111445297 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.0e-06
Identity = 34/109 (31.19%), Postives = 60/109 (55.05%), Query Frame = 0

Query: 1   MSRQVF--GWDEMDQQKENYTPKVDWKERKETNKEYYDMMIDFSGCSRNQLQISMSRELK 60
           MS Q+    W ++ +  + ++P   W E + +      + +   G  +NQLQI+++   +
Sbjct: 1   MSSQIVEQDWGDVTRSDQPFSPDTKWAEEEHSR----ILSMKLPGFPKNQLQITLNAATR 60

Query: 61  TIDIMTTKKEG-YNIVRVNESIPIKNECSLDDVYASFVKNDLIITFPKK 107
           T+ +   K++G +NI+R+NE I I + CSLD V+A      L +TF KK
Sbjct: 61  TLTVTGQKQDGLFNIIRLNERISIDDTCSLDGVFARLHDQTLFVTFSKK 105

BLAST of CmoCh04G026180 vs. ExPASy TrEMBL
Match: A0A0A0KB53 (SHSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G046370 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.5e-05
Identity = 35/110 (31.82%), Postives = 63/110 (57.27%), Query Frame = 0

Query: 1   MSRQVFGWD---EMDQQKENYTPKVDWKERKETNKEYYDMMIDFSGCSRNQLQISMSREL 60
           MS Q+   D    + QQ + + P + ++E +E NK  + M +   G S+++L+I+++   
Sbjct: 1   MSSQIVNQDWRNVVTQQNQQFFPSITFEESEEKNKWSFSMKL--PGFSKDRLRINLNTRT 60

Query: 61  KTIDIMTTKKEG-YNIVRVNESIPIKNECSLDDVYASFVKNDLIITFPKK 107
           + I +   K +G +NI R+NE + IK +C L+ V A    + LI+TF K+
Sbjct: 61  RIIVVTGQKSDGLFNITRLNERVTIKEDCLLEGVQAKLSNDTLIVTFEKE 108

BLAST of CmoCh04G026180 vs. NCBI nr
Match: KAG6602241.1 (hypothetical protein SDJN03_07474, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 200.3 bits (508), Expect = 8.6e-48
Identity = 95/109 (87.16%), Postives = 104/109 (95.41%), Query Frame = 0

Query: 1   MSRQVFGWDEMDQQKENYTPKVDWKERKETNKEYYDMMIDFSGCSRNQLQISMSRELKTI 60
           MSRQVFGWDEMDQQKENY P V+WKERKETNK+Y++M+IDFSGCSRNQLQISMSREL+TI
Sbjct: 1   MSRQVFGWDEMDQQKENYRPNVEWKERKETNKDYFEMIIDFSGCSRNQLQISMSRELRTI 60

Query: 61  DIMTTKKEGYNIVRVNESIPIKNECSLDDVYASFVKNDLIITFPKKTNV 110
           DIMTTKKEGYNI RVNE+IPI+ ECSLD+VYASFV NDLIITFPKKTNV
Sbjct: 61  DIMTTKKEGYNIARVNETIPIRPECSLDNVYASFVNNDLIITFPKKTNV 109

BLAST of CmoCh04G026180 vs. NCBI nr
Match: XP_022939359.1 (uncharacterized protein LOC111445297 [Cucurbita moschata])

HSP 1 Score: 60.8 bits (146), Expect = 8.2e-06
Identity = 34/109 (31.19%), Postives = 60/109 (55.05%), Query Frame = 0

Query: 1   MSRQVF--GWDEMDQQKENYTPKVDWKERKETNKEYYDMMIDFSGCSRNQLQISMSRELK 60
           MS Q+    W ++ +  + ++P   W E + +      + +   G  +NQLQI+++   +
Sbjct: 1   MSSQIVEQDWGDVTRSDQPFSPDTKWAEEEHSR----ILSMKLPGFPKNQLQITLNAATR 60

Query: 61  TIDIMTTKKEG-YNIVRVNESIPIKNECSLDDVYASFVKNDLIITFPKK 107
           T+ +   K++G +NI+R+NE I I + CSLD V+A      L +TF KK
Sbjct: 61  TLTVTGQKQDGLFNIIRLNERISIDDTCSLDGVFARLHDQTLFVTFSKK 105

BLAST of CmoCh04G026180 vs. NCBI nr
Match: KAG7016359.1 (hypothetical protein SDJN02_21467 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-05
Identity = 33/109 (30.28%), Postives = 61/109 (55.96%), Query Frame = 0

Query: 1   MSRQVF--GWDEMDQQKENYTPKVDWKERKETNKEYYDMMIDFSGCSRNQLQISMSRELK 60
           MS Q+    W ++ +  + ++P   W E + +      + +   G  +N+LQI+++   +
Sbjct: 1   MSSQIVEQDWRDVTRSDQPFSPDTKWAEEEHSR----ILSMKLPGFPKNRLQITLNAATR 60

Query: 61  TIDIMTTKKEG-YNIVRVNESIPIKNECSLDDVYASFVKNDLIITFPKK 107
           T+ +   K++G +NI+R+NE I I + CSLD V+A    + L +TF KK
Sbjct: 61  TLTVTGQKQDGLFNIIRLNERISIDDTCSLDGVFARLHDHTLFVTFSKK 105

BLAST of CmoCh04G026180 vs. NCBI nr
Match: KAE8646641.1 (hypothetical protein Csa_005322 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 3.1e-05
Identity = 35/110 (31.82%), Postives = 63/110 (57.27%), Query Frame = 0

Query: 1   MSRQVFGWD---EMDQQKENYTPKVDWKERKETNKEYYDMMIDFSGCSRNQLQISMSREL 60
           MS Q+   D    + QQ + + P + ++E +E NK  + M +   G S+++L+I+++   
Sbjct: 44  MSSQIVNQDWRNVVTQQNQQFFPSITFEESEEKNKWSFSMKL--PGFSKDRLRINLNTRT 103

Query: 61  KTIDIMTTKKEG-YNIVRVNESIPIKNECSLDDVYASFVKNDLIITFPKK 107
           + I +   K +G +NI R+NE + IK +C L+ V A    + LI+TF K+
Sbjct: 104 RIIVVTGQKSDGLFNITRLNERVTIKEDCLLEGVQAKLSNDTLIVTFEKE 151

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FGX84.0e-0631.19uncharacterized protein LOC111445297 OS=Cucurbita moschata OX=3662 GN=LOC1114452... [more]
A0A0A0KB531.5e-0531.82SHSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G046370 PE=3 S... [more]
Match NameE-valueIdentityDescription
KAG6602241.18.6e-4887.16hypothetical protein SDJN03_07474, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022939359.18.2e-0631.19uncharacterized protein LOC111445297 [Cucurbita moschata][more]
KAG7016359.12.4e-0530.28hypothetical protein SDJN02_21467 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAE8646641.13.1e-0531.82hypothetical protein Csa_005322 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008978HSP20-like chaperoneGENE3D2.60.40.790coord: 13..107
e-value: 9.2E-8
score: 33.9
IPR008978HSP20-like chaperoneSUPERFAMILY49764HSP20-like chaperonescoord: 14..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G026180.1CmoCh04G026180.1mRNA