CmoCh04G024940 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGATTAGATATTTCTTGGCCTTTCGAGCCTCGGTACCGATGCTCAGACACTGTATGTTCCTGTGGTTGATTCTTTTCGGTTTGGTTAATTTTCCATTGCTTAACTCCTTCTGCATTTGAAATGAAGGTATCAACGGCTTGTCTATCAGCACAAACTACACCAGCTTCGAGAAGAGAGGGACATGAAACCTGAGACATTTGCTAGCCTTGTCTCAGCACGTCTTTATGAGAAAAGGTTGGACATCGATTAAACTTCTAGTTATCTCTTTTTCAGCAGTTTTAATCACGCATACTCTCTATTTTTCGCCATAGACTGAAGAACACGGTTGGGAATGAGATTTATTTAGGATTTGTACGAGCTTCATTTGTGTGTATATGTTGATTCTTCTGCCAATGTGATCCTCATGTTGGTGTAATATTTTTAAGCTGACTTGATAGACATGTTGCCTTCCACTAAGTTGTTGAGGATGGTTGGGAATGAGTCACACATTAGCTAATTAAGGAAATGATCACGAGTTTATAAGTAAGGAATACATCTCCATTGGTATGAGACATTTTGGGGAAACCTTGCAAAGCTATGAGAGATTATGCTCAAAGTGGATAATATCATACCATTGTGGAGGTCCGTGATTCCTAACATGGTATCAGAACCATGCTTTTAACTTAGCCATGTCAATAGAATCCTCAAATGTTGAACAAAGAAGTTGTGAGCCTCGAAGGTGTAGTCAAGAGTGACTCAAGTGTCAAATAAAGGGTGTACTTTGTTCAAAGGCTCCAAAGAATGAGTTGAGCCTCGATTAAGAGGAGACTGTTCGAGGGCTCCATAGGCCTCATGGGAGGCTCTATGGTGTACTTTATTTTAGGGGAGGATTGTTGGGAAGGAGTCGCGCATTGGCTAATTAAGGGAATGATCATGGGTTTATAAGTAAGGAATATATCTCCATTTGTATGAGGTATTTTGGGGAAACCAAAAGCAAAGCCATGAAAGCTTATGTTCAAAGTAGACAATATCATACTGTTGTGGAAATCCGTGATTCCTAACATGATATCAGAGTCATGTCCATAGAATCCTTAAATGTCGAACAAAGAAGTTGTGAGCTTTAAAGATACAGTCAAAAGTGACTCAAGTGTAATTTGTTCGAGATCTCCAGAGAAGGAGTAGAGCCTTGATTTAGGGGAGACTATTCGAGGAAGGTTTTATGGTGTACTTTGTTCAAGAGGAGGATTGTTGGGAAAGGAGTCTCACATCGGCTAATTAAGAGGTTGATCATGGGTTTATGAGTAAATGTTCAAAGTGGACAATATCATACTATTGTGGAGGTATGTAGCATGAATATGATAGGAAAATTTAGTAGCAAAAAAGATTGATTTTCTAGCGAGAGAACTTTGGCTTGAATTACATTGTTGGACAATTGACATGAACCAATTACTAATGGAAGCATTGCACAATTGTTCCTAGGACTCATAAAAGAAAGAAATGGGCTGTGGTCTTGGAGTTTTTGCTAAAGCTAATGATCTATTTGAAAGTTCTCTTTGGATTATCTTGTCATCTGCTTCATGGAAGGCTTCTTCCATCACTACGTGCATTGAGCATTGACCAACAAAGTTAAGTTTTGGTAATGGAAACAGCATCCAGAGTAATCCCAACCGGGTTTCCTGTTTCTTCTTCAAAGATAACCAACAGGTTTCCTGTTGGCTTGAGGAAGGAACGTGGTACATGATACCTGGATTGAAACAACAGAAAGAATTGTATTAAGATATGATATAATAGCACCAGATACTAAGGTCTGAATAAATTGTGTACCATTTCTGTGAAGGCTCCCCTTTTCCGGTGAGGAAGGAGACCCAGTATCGGCCAATGCCCCAGCCGTTAACCCAAACTGCACCCTTCCCCATGGAGCCAAGGTTCAGGGCGATAGGGTCATCACCCGGAGGTGCATCAAACTGAGTCTGTCAATTGGACAATGA ATGATTAGATATTTCTTGGCCTTTCGAGCCTCGGTACCGATGCTCAGACACTGTATGTTCCTGTATCAACGGCTTGTCTATCAGCACAAACTACACCAGCTTCGAGAAGAGAGGGACATGAAACCTGAGACATTTGCTAGCCTTGTCTCAGCACGTCTTTATGAGAAAAGCATCCAGAGTAATCCCAACCGGGTTTCCTGTTTCTTCTTCAAAGATAACCAACAGGTTTCCTGTTGGCTTGAGGAAGGAACGTGGTACATGATACCTGGATTGAAACAACAGAAAGAATTGCTCCCCTTTTCCGGTGAGGAAGGAGACCCAGTATCGGCCAATGCCCCAGCCGTTAACCCAAACTGCACCCTTCCCCATGGAGCCAAGGTTCAGGGCGATAGGGTCATCACCCGGAGGTGCATCAAACTGAGTCTGTCAATTGGACAATGA ATGATTAGATATTTCTTGGCCTTTCGAGCCTCGGTACCGATGCTCAGACACTGTATGTTCCTGTATCAACGGCTTGTCTATCAGCACAAACTACACCAGCTTCGAGAAGAGAGGGACATGAAACCTGAGACATTTGCTAGCCTTGTCTCAGCACGTCTTTATGAGAAAAGCATCCAGAGTAATCCCAACCGGGTTTCCTGTTTCTTCTTCAAAGATAACCAACAGGTTTCCTGTTGGCTTGAGGAAGGAACGTGGTACATGATACCTGGATTGAAACAACAGAAAGAATTGCTCCCCTTTTCCGGTGAGGAAGGAGACCCAGTATCGGCCAATGCCCCAGCCGTTAACCCAAACTGCACCCTTCCCCATGGAGCCAAGGTTCAGGGCGATAGGGTCATCACCCGGAGGTGCATCAAACTGAGTCTGTCAATTGGACAATGA MIRYFLAFRASVPMLRHCMFLYQRLVYQHKLHQLREERDMKPETFASLVSARLYEKSIQSNPNRVSCFFFKDNQQVSCWLEEGTWYMIPGLKQQKELLPFSGEEGDPVSANAPAVNPNCTLPHGAKVQGDRVITRRCIKLSLSIGQ Homology
BLAST of CmoCh04G024940 vs. ExPASy Swiss-Prot
Match: Q9XI05 (Proteasome subunit beta type-3-A OS=Arabidopsis thaliana OX=3702 GN=PBC1 PE=1 SV=2) HSP 1 Score: 65.1 bits (157), Expect = 7.6e-10 Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0
BLAST of CmoCh04G024940 vs. ExPASy Swiss-Prot
Match: O81153 (Proteasome subunit beta type-3-B OS=Arabidopsis thaliana OX=3702 GN=PBC2 PE=1 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 7.6e-10 Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0
BLAST of CmoCh04G024940 vs. ExPASy Swiss-Prot
Match: Q9LST7 (Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica OX=39947 GN=PBC1 PE=2 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 1.3e-09 Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 0
BLAST of CmoCh04G024940 vs. ExPASy Swiss-Prot
Match: O65084 (Proteasome subunit beta type-3 OS=Picea mariana OX=3335 GN=PBC1 PE=2 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 4.2e-08 Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0
BLAST of CmoCh04G024940 vs. ExPASy Swiss-Prot
Match: Q55D66 (Proteasome subunit beta type-3 OS=Dictyostelium discoideum OX=44689 GN=psmB3 PE=3 SV=1) HSP 1 Score: 45.8 bits (107), Expect = 4.8e-04 Identity = 20/36 (55.56%), Postives = 29/36 (80.56%), Query Frame = 0
BLAST of CmoCh04G024940 vs. ExPASy TrEMBL
Match: A0A5A7V654 (Proteasome subunit beta type-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002760 PE=4 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 1.3e-09 Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 0
BLAST of CmoCh04G024940 vs. ExPASy TrEMBL
Match: A0A6J1GSE0 (Proteasome subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111457011 PE=3 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 3.9e-09 Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0
BLAST of CmoCh04G024940 vs. ExPASy TrEMBL
Match: A0A5D3CF09 (E3 ubiquitin ligase BIG BROTHER-related-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00370 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 3.9e-09 Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0
BLAST of CmoCh04G024940 vs. ExPASy TrEMBL
Match: A0A6J1JU09 (proteasome subunit beta type-3-A-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487832 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 3.9e-09 Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0
BLAST of CmoCh04G024940 vs. ExPASy TrEMBL
Match: A0A6J1JVC3 (Proteasome subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111487832 PE=3 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 3.9e-09 Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0
BLAST of CmoCh04G024940 vs. NCBI nr
Match: KAG6602114.1 (Proteasome subunit beta type-3-B, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 73.9 bits (180), Expect = 1.2e-09 Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0
BLAST of CmoCh04G024940 vs. NCBI nr
Match: KAA0061976.1 (proteasome subunit beta type-3-like [Cucumis melo var. makuwa]) HSP 1 Score: 72.8 bits (177), Expect = 2.8e-09 Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 0
BLAST of CmoCh04G024940 vs. NCBI nr
Match: XP_022954907.1 (proteasome subunit beta type-3-A-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 71.2 bits (173), Expect = 8.1e-09 Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0
BLAST of CmoCh04G024940 vs. NCBI nr
Match: XP_022991149.1 (proteasome subunit beta type-3-A-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 71.2 bits (173), Expect = 8.1e-09 Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0
BLAST of CmoCh04G024940 vs. NCBI nr
Match: KAG6602111.1 (Proteasome subunit beta type-3-A, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 71.2 bits (173), Expect = 8.1e-09 Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0
BLAST of CmoCh04G024940 vs. TAIR 10
Match: AT1G77440.1 (20S proteasome beta subunit C2 ) HSP 1 Score: 65.1 bits (157), Expect = 5.4e-11 Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0
BLAST of CmoCh04G024940 vs. TAIR 10
Match: AT1G21720.1 (proteasome beta subunit C1 ) HSP 1 Score: 65.1 bits (157), Expect = 5.4e-11 Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0
BLAST of CmoCh04G024940 vs. TAIR 10
Match: AT1G77440.2 (20S proteasome beta subunit C2 ) HSP 1 Score: 65.1 bits (157), Expect = 5.4e-11 Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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