CmoCh04G024940 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G024940
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Proteasome subunit beta
Location	Cmo_Chr04: 18360631 .. 18362598 (-)
RNA-Seq Expression	CmoCh04G024940
Synteny	CmoCh04G024940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTAGATATTTCTTGGCCTTTCGAGCCTCGGTACCGATGCTCAGACACTGTATGTTCCTGTGGTTGATTCTTTTCGGTTTGGTTAATTTTCCATTGCTTAACTCCTTCTGCATTTGAAATGAAGGTATCAACGGCTTGTCTATCAGCACAAACTACACCAGCTTCGAGAAGAGAGGGACATGAAACCTGAGACATTTGCTAGCCTTGTCTCAGCACGTCTTTATGAGAAAAGGTTGGACATCGATTAAACTTCTAGTTATCTCTTTTTCAGCAGTTTTAATCACGCATACTCTCTATTTTTCGCCATAGACTGAAGAACACGGTTGGGAATGAGATTTATTTAGGATTTGTACGAGCTTCATTTGTGTGTATATGTTGATTCTTCTGCCAATGTGATCCTCATGTTGGTGTAATATTTTTAAGCTGACTTGATAGACATGTTGCCTTCCACTAAGTTGTTGAGGATGGTTGGGAATGAGTCACACATTAGCTAATTAAGGAAATGATCACGAGTTTATAAGTAAGGAATACATCTCCATTGGTATGAGACATTTTGGGGAAACCTTGCAAAGCTATGAGAGATTATGCTCAAAGTGGATAATATCATACCATTGTGGAGGTCCGTGATTCCTAACATGGTATCAGAACCATGCTTTTAACTTAGCCATGTCAATAGAATCCTCAAATGTTGAACAAAGAAGTTGTGAGCCTCGAAGGTGTAGTCAAGAGTGACTCAAGTGTCAAATAAAGGGTGTACTTTGTTCAAAGGCTCCAAAGAATGAGTTGAGCCTCGATTAAGAGGAGACTGTTCGAGGGCTCCATAGGCCTCATGGGAGGCTCTATGGTGTACTTTATTTTAGGGGAGGATTGTTGGGAAGGAGTCGCGCATTGGCTAATTAAGGGAATGATCATGGGTTTATAAGTAAGGAATATATCTCCATTTGTATGAGGTATTTTGGGGAAACCAAAAGCAAAGCCATGAAAGCTTATGTTCAAAGTAGACAATATCATACTGTTGTGGAAATCCGTGATTCCTAACATGATATCAGAGTCATGTCCATAGAATCCTTAAATGTCGAACAAAGAAGTTGTGAGCTTTAAAGATACAGTCAAAAGTGACTCAAGTGTAATTTGTTCGAGATCTCCAGAGAAGGAGTAGAGCCTTGATTTAGGGGAGACTATTCGAGGAAGGTTTTATGGTGTACTTTGTTCAAGAGGAGGATTGTTGGGAAAGGAGTCTCACATCGGCTAATTAAGAGGTTGATCATGGGTTTATGAGTAAATGTTCAAAGTGGACAATATCATACTATTGTGGAGGTATGTAGCATGAATATGATAGGAAAATTTAGTAGCAAAAAAGATTGATTTTCTAGCGAGAGAACTTTGGCTTGAATTACATTGTTGGACAATTGACATGAACCAATTACTAATGGAAGCATTGCACAATTGTTCCTAGGACTCATAAAAGAAAGAAATGGGCTGTGGTCTTGGAGTTTTTGCTAAAGCTAATGATCTATTTGAAAGTTCTCTTTGGATTATCTTGTCATCTGCTTCATGGAAGGCTTCTTCCATCACTACGTGCATTGAGCATTGACCAACAAAGTTAAGTTTTGGTAATGGAAACAGCATCCAGAGTAATCCCAACCGGGTTTCCTGTTTCTTCTTCAAAGATAACCAACAGGTTTCCTGTTGGCTTGAGGAAGGAACGTGGTACATGATACCTGGATTGAAACAACAGAAAGAATTGTATTAAGATATGATATAATAGCACCAGATACTAAGGTCTGAATAAATTGTGTACCATTTCTGTGAAGGCTCCCCTTTTCCGGTGAGGAAGGAGACCCAGTATCGGCCAATGCCCCAGCCGTTAACCCAAACTGCACCCTTCCCCATGGAGCCAAGGTTCAGGGCGATAGGGTCATCACCCGGAGGTGCATCAAACTGAGTCTGTCAATTGGACAATGA

mRNA sequence

ATGATTAGATATTTCTTGGCCTTTCGAGCCTCGGTACCGATGCTCAGACACTGTATGTTCCTGTATCAACGGCTTGTCTATCAGCACAAACTACACCAGCTTCGAGAAGAGAGGGACATGAAACCTGAGACATTTGCTAGCCTTGTCTCAGCACGTCTTTATGAGAAAAGCATCCAGAGTAATCCCAACCGGGTTTCCTGTTTCTTCTTCAAAGATAACCAACAGGTTTCCTGTTGGCTTGAGGAAGGAACGTGGTACATGATACCTGGATTGAAACAACAGAAAGAATTGCTCCCCTTTTCCGGTGAGGAAGGAGACCCAGTATCGGCCAATGCCCCAGCCGTTAACCCAAACTGCACCCTTCCCCATGGAGCCAAGGTTCAGGGCGATAGGGTCATCACCCGGAGGTGCATCAAACTGAGTCTGTCAATTGGACAATGA

Coding sequence (CDS)

ATGATTAGATATTTCTTGGCCTTTCGAGCCTCGGTACCGATGCTCAGACACTGTATGTTCCTGTATCAACGGCTTGTCTATCAGCACAAACTACACCAGCTTCGAGAAGAGAGGGACATGAAACCTGAGACATTTGCTAGCCTTGTCTCAGCACGTCTTTATGAGAAAAGCATCCAGAGTAATCCCAACCGGGTTTCCTGTTTCTTCTTCAAAGATAACCAACAGGTTTCCTGTTGGCTTGAGGAAGGAACGTGGTACATGATACCTGGATTGAAACAACAGAAAGAATTGCTCCCCTTTTCCGGTGAGGAAGGAGACCCAGTATCGGCCAATGCCCCAGCCGTTAACCCAAACTGCACCCTTCCCCATGGAGCCAAGGTTCAGGGCGATAGGGTCATCACCCGGAGGTGCATCAAACTGAGTCTGTCAATTGGACAATGA

Protein sequence

MIRYFLAFRASVPMLRHCMFLYQRLVYQHKLHQLREERDMKPETFASLVSARLYEKSIQSNPNRVSCFFFKDNQQVSCWLEEGTWYMIPGLKQQKELLPFSGEEGDPVSANAPAVNPNCTLPHGAKVQGDRVITRRCIKLSLSIGQ

Homology

[Close]

BLAST of CmoCh04G024940 vs. ExPASy Swiss-Prot
Match: Q9XI05 (Proteasome subunit beta type-3-A OS=Arabidopsis thaliana OX=3702 GN=PBC1 PE=1 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 7.6e-10
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSAILYEK 98

[Close]

BLAST of CmoCh04G024940 vs. ExPASy Swiss-Prot
Match: O81153 (Proteasome subunit beta type-3-B OS=Arabidopsis thaliana OX=3702 GN=PBC2 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.6e-10
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSAILYEK 98

[Close]

BLAST of CmoCh04G024940 vs. ExPASy Swiss-Prot
Match: Q9LST7 (Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica OX=39947 GN=PBC1 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-09
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKP+TFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEK 98

[Close]

BLAST of CmoCh04G024940 vs. ExPASy Swiss-Prot
Match: O65084 (Proteasome subunit beta type-3 OS=Picea mariana OX=3335 GN=PBC1 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.2e-08
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQR  ++HKL+QLREER+M+PETFASLVSA LYEK
Sbjct: 63 LYQRFAFRHKLYQLREERNMRPETFASLVSALLYEK 98

[Close]

BLAST of CmoCh04G024940 vs. ExPASy Swiss-Prot
Match: Q55D66 (Proteasome subunit beta type-3 OS=Dictyostelium discoideum OX=44689 GN=psmB3 PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.8e-04
Identity = 20/36 (55.56%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQ+LV++H L++LREERDM P   ++L++  LYEK
Sbjct: 63 LYQKLVFRHNLYKLREERDMSPRVVSNLLTNMLYEK 98

[Close]

BLAST of CmoCh04G024940 vs. ExPASy TrEMBL
Match: A0A5A7V654 (Proteasome subunit beta type-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002760 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-09
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 21  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEKSIQS 61
           LYQRLVYQHKL+QLREERDMKPETFASLVSARLYEK I +
Sbjct: 553 LYQRLVYQHKLYQLREERDMKPETFASLVSARLYEKRISA 592

[Close]

BLAST of CmoCh04G024940 vs. ExPASy TrEMBL
Match: A0A6J1GSE0 (Proteasome subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111457011 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.9e-09
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLVYQHKL+QLREERDMKPETFASLVSARLYEK
Sbjct: 63 LYQRLVYQHKLYQLREERDMKPETFASLVSARLYEK 98

[Close]

BLAST of CmoCh04G024940 vs. ExPASy TrEMBL
Match: A0A5D3CF09 (E3 ubiquitin ligase BIG BROTHER-related-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00370 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.9e-09
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLVYQHKL+QLREERDMKPETFASLVSARLYEK
Sbjct: 63 LYQRLVYQHKLYQLREERDMKPETFASLVSARLYEK 98

[Close]

BLAST of CmoCh04G024940 vs. ExPASy TrEMBL
Match: A0A6J1JU09 (proteasome subunit beta type-3-A-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487832 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.9e-09
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLVYQHKL+QLREERDMKPETFASLVSARLYEK
Sbjct: 50 LYQRLVYQHKLYQLREERDMKPETFASLVSARLYEK 85

[Close]

BLAST of CmoCh04G024940 vs. ExPASy TrEMBL
Match: A0A6J1JVC3 (Proteasome subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111487832 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.9e-09
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLVYQHKL+QLREERDMKPETFASLVSARLYEK
Sbjct: 63 LYQRLVYQHKLYQLREERDMKPETFASLVSARLYEK 98

[Close]

BLAST of CmoCh04G024940 vs. NCBI nr
Match: KAG6602114.1 (Proteasome subunit beta type-3-B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-09
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEKSI 59
          LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK +
Sbjct: 42 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEKRL 79

[Close]

BLAST of CmoCh04G024940 vs. NCBI nr
Match: KAA0061976.1 (proteasome subunit beta type-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 2.8e-09
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 0


Query: 21  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEKSIQS 61
           LYQRLVYQHKL+QLREERDMKPETFASLVSARLYEK I +
Sbjct: 553 LYQRLVYQHKLYQLREERDMKPETFASLVSARLYEKRISA 592

[Close]

BLAST of CmoCh04G024940 vs. NCBI nr
Match: XP_022954907.1 (proteasome subunit beta type-3-A-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 71.2 bits (173), Expect = 8.1e-09
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLVYQHKL+QLREERDMKPETFASLVSARLYEK
Sbjct: 63 LYQRLVYQHKLYQLREERDMKPETFASLVSARLYEK 98

[Close]

BLAST of CmoCh04G024940 vs. NCBI nr
Match: XP_022991149.1 (proteasome subunit beta type-3-A-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 71.2 bits (173), Expect = 8.1e-09
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLVYQHKL+QLREERDMKPETFASLVSARLYEK
Sbjct: 50 LYQRLVYQHKLYQLREERDMKPETFASLVSARLYEK 85

[Close]

BLAST of CmoCh04G024940 vs. NCBI nr
Match: KAG6602111.1 (Proteasome subunit beta type-3-A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.2 bits (173), Expect = 8.1e-09
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLVYQHKL+QLREERDMKPETFASLVSARLYEK
Sbjct: 63 LYQRLVYQHKLYQLREERDMKPETFASLVSARLYEK 98

[Close]

BLAST of CmoCh04G024940 vs. TAIR 10
Match: AT1G77440.1 (20S proteasome beta subunit C2 )

HSP 1 Score: 65.1 bits (157), Expect = 5.4e-11
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSAILYEK 98

[Close]

BLAST of CmoCh04G024940 vs. TAIR 10
Match: AT1G21720.1 (proteasome beta subunit C1 )

HSP 1 Score: 65.1 bits (157), Expect = 5.4e-11
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSAILYEK 98

[Close]

BLAST of CmoCh04G024940 vs. TAIR 10
Match: AT1G77440.2 (20S proteasome beta subunit C2 )

HSP 1 Score: 65.1 bits (157), Expect = 5.4e-11
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 21 LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK 57
          LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Sbjct: 63 LYQRLVFRHKLYQLREERDMKPETFASLVSAILYEK 98

The following BLAST results are available for this feature:

BLAST of CmoCh04G024940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XI05	7.6e-10	88.89	Proteasome subunit beta type-3-A OS=Arabidopsis thaliana OX=3702 GN=PBC1 PE=1 SV...	[more]
O81153	7.6e-10	88.89	Proteasome subunit beta type-3-B OS=Arabidopsis thaliana OX=3702 GN=PBC2 PE=1 SV...	[more]
Q9LST7	1.3e-09	86.11	Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica OX=39947 GN=PBC1 ...	[more]
O65084	4.2e-08	77.78	Proteasome subunit beta type-3 OS=Picea mariana OX=3335 GN=PBC1 PE=2 SV=1	[more]
Q55D66	4.8e-04	55.56	Proteasome subunit beta type-3 OS=Dictyostelium discoideum OX=44689 GN=psmB3 PE=...	[more]

BLAST of CmoCh04G024940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V654	1.3e-09	90.00	Proteasome subunit beta type-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A6J1GSE0	3.9e-09	97.22	Proteasome subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111457011 PE=3 SV=1	[more]
A0A5D3CF09	3.9e-09	97.22	E3 ubiquitin ligase BIG BROTHER-related-like OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A6J1JU09	3.9e-09	97.22	proteasome subunit beta type-3-A-like isoform X2 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1JVC3	3.9e-09	97.22	Proteasome subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111487832 PE=3 SV=1	[more]

BLAST of CmoCh04G024940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602114.1	1.2e-09	94.74	Proteasome subunit beta type-3-B, partial [Cucurbita argyrosperma subsp. sororia...	[more]
KAA0061976.1	2.8e-09	90.00	proteasome subunit beta type-3-like [Cucumis melo var. makuwa]	[more]
XP_022954907.1	8.1e-09	97.22	proteasome subunit beta type-3-A-like isoform X2 [Cucurbita moschata]	[more]
XP_022991149.1	8.1e-09	97.22	proteasome subunit beta type-3-A-like isoform X2 [Cucurbita maxima]	[more]
KAG6602111.1	8.1e-09	97.22	Proteasome subunit beta type-3-A, partial [Cucurbita argyrosperma subsp. sororia...	[more]

BLAST of CmoCh04G024940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G77440.1	5.4e-11	88.89	20S proteasome beta subunit C2	[more]
AT1G21720.1	5.4e-11	88.89	proteasome beta subunit C1	[more]
AT1G77440.2	5.4e-11	88.89	20S proteasome beta subunit C2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11599	PROTEASOME SUBUNIT ALPHA/BETA	coord: 20..60
None	No IPR available	PANTHER	PTHR11599:SF179	PROTEASOME SUBUNIT BETA TYPE-3-B	coord: 20..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G024940.1	CmoCh04G024940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0019774	proteasome core complex, beta-subunit complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity
molecular_function	GO:0004298	threonine-type endopeptidase activity