Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTGTTTTTTTTTTTTTTTTCTTAGGTTCAATCCAACTCCCCGGAAAGAGACCATAATCCCTCCGGCAAGAAATGGAAGATCAAACAAACGGCAACGAAATCAAAGCCATACCCCCAAAAGAAAGAGTAATCATTACTGTTTATGTTGAATCTCCCAGAAAACAGAGCAATAAGTCCCATCAAAACCCCATTTCCATTAACAAAAACTCTCATCCAAATGCTCATCCCAAAGCCCCTAAATCCAGAGGCTACGATCGTCGGGCTGAGCTTCTTGCGTATTCTCGTGAGCTCAGAAATGTGGATTCTGCTACGACCCACTTGCCCAAAACTAAATCCAAATGGAGGGTGAAATCGGAGACGGCGGCGGTACGGCGACTTCCGTCGAGACGGGGGTTGCGGCAGGGGAGATATGAACGGGTTGGGATGATGAGGGAAGAGAGAACAGAGGTGGTGGAACAGAGATGCTTGCCCAAGTGCTTCAACGGAGATTACAAGAGAAGCAGTGGCCGATTGGGATCTTCCATATTAGTAAATTTCACATTGCATTGAATCGTGTTTTTATTGTTTGTTTGTTTGTTTAGTATGTTGATTAATGTGTTTGTGTTATCAGAGGAAATTGAAGAGTTTGATGGGAGGGTTATCAATGGGCTGCAAACGCGGTGGTTGGTGATGGTTAAGAACAGAAATGGTGGAATGAGATCCGCCATTTGTGTTGAGTTCGTGGGTATCCATTGGGCTCTGAATTAGCAGCGAAATTAAGTCATCTCTGTCTGTTTCAACTCTCCTTTAGTGGTTATGTTGCCT
mRNA sequence
TCTGTTTTTTTTTTTTTTTTCTTAGGTTCAATCCAACTCCCCGGAAAGAGACCATAATCCCTCCGGCAAGAAATGGAAGATCAAACAAACGGCAACGAAATCAAAGCCATACCCCCAAAAGAAAGAGTAATCATTACTGTTTATGTTGAATCTCCCAGAAAACAGAGCAATAAGTCCCATCAAAACCCCATTTCCATTAACAAAAACTCTCATCCAAATGCTCATCCCAAAGCCCCTAAATCCAGAGGCTACGATCGTCGGGCTGAGCTTCTTGCGTATTCTCGTGAGCTCAGAAATGTGGATTCTGCTACGACCCACTTGCCCAAAACTAAATCCAAATGGAGGGTGAAATCGGAGACGGCGGCGGTACGGCGACTTCCGTCGAGACGGGGGTTGCGGCAGGGGAGATATGAACGGGTTGGGATGATGAGGGAAGAGAGAACAGAGGTGGTGGAACAGAGATGCTTGCCCAAGTGCTTCAACGGAGATTACAAGAGAAGCAGTGGCCGATTGGGATCTTCCATATTAAGGAAATTGAAGAGTTTGATGGGAGGGTTATCAATGGGCTGCAAACGCGGTGGTTGGTGATGGTTAAGAACAGAAATGGTGGAATGAGATCCGCCATTTGTGTTGAGTTCGTGGGTATCCATTGGGCTCTGAATTAGCAGCGAAATTAAGTCATCTCTGTCTGTTTCAACTCTCCTTTAGTGGTTATGTTGCCT
Coding sequence (CDS)
ATGGAAGATCAAACAAACGGCAACGAAATCAAAGCCATACCCCCAAAAGAAAGAGTAATCATTACTGTTTATGTTGAATCTCCCAGAAAACAGAGCAATAAGTCCCATCAAAACCCCATTTCCATTAACAAAAACTCTCATCCAAATGCTCATCCCAAAGCCCCTAAATCCAGAGGCTACGATCGTCGGGCTGAGCTTCTTGCGTATTCTCGTGAGCTCAGAAATGTGGATTCTGCTACGACCCACTTGCCCAAAACTAAATCCAAATGGAGGGTGAAATCGGAGACGGCGGCGGTACGGCGACTTCCGTCGAGACGGGGGTTGCGGCAGGGGAGATATGAACGGGTTGGGATGATGAGGGAAGAGAGAACAGAGGTGGTGGAACAGAGATGCTTGCCCAAGTGCTTCAACGGAGATTACAAGAGAAGCAGTGGCCGATTGGGATCTTCCATATTAAGGAAATTGAAGAGTTTGATGGGAGGGTTATCAATGGGCTGCAAACGCGGTGGTTGGTGA
Protein sequence
MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGYDRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMREERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKRGGW
Homology
BLAST of CmoCh04G024400 vs. ExPASy TrEMBL
Match:
A0A6J1HCQ4 (uncharacterized protein LOC111462789 OS=Cucurbita moschata OX=3662 GN=LOC111462789 PE=4 SV=1)
HSP 1 Score: 338.6 bits (867), Expect = 1.5e-89
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0
Query: 1 MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY 60
MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY
Sbjct: 1 MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY 60
Query: 61 DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR 120
DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR
Sbjct: 61 DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR 120
Query: 121 EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKRGGW 172
EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKRGGW
Sbjct: 121 EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKRGGW 171
BLAST of CmoCh04G024400 vs. ExPASy TrEMBL
Match:
A0A6J1JSH9 (uncharacterized protein LOC111487148 OS=Cucurbita maxima OX=3661 GN=LOC111487148 PE=4 SV=1)
HSP 1 Score: 324.7 bits (831), Expect = 2.3e-85
Identity = 166/171 (97.08%), Postives = 167/171 (97.66%), Query Frame = 0
Query: 1 MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY 60
MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNA PKA KSRGY
Sbjct: 1 MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAPPKATKSRGY 60
Query: 61 DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR 120
DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRR+PSRRGLRQGRYERVGMMR
Sbjct: 61 DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRIPSRRGLRQGRYERVGMMR 120
Query: 121 EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKRGGW 172
EERTEVVEQRCLPKCFNGD KRSSGRLGSSILRKLKSLMGGLS GCKRGGW
Sbjct: 121 EERTEVVEQRCLPKCFNGDDKRSSGRLGSSILRKLKSLMGGLSKGCKRGGW 171
BLAST of CmoCh04G024400 vs. ExPASy TrEMBL
Match:
A0A0A0KN34 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G385350 PE=4 SV=1)
HSP 1 Score: 181.8 bits (460), Expect = 2.4e-42
Identity = 104/177 (58.76%), Postives = 126/177 (71.19%), Query Frame = 0
Query: 2 EDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPI-SINKNSHPNAHP---KAPKS 61
E Q++ N + +P K+ VIITVYVESP+ Q++ H+ PI N N++ N P K P S
Sbjct: 5 EMQSHTNNYQTLPKKQEVIITVYVESPKLQNSNPHKTPIVPHNNNNNSNPKPSLRKTPNS 64
Query: 62 RGYDRRAELLAYSRELRNVDSATTHLPKTKS---KWRVKSETAAVRRLPSRRGLRQGRYE 121
GYDRRA+LLAYSR LRNV S+ T PK KS KW+V+SE VRR+PSRR L++ RYE
Sbjct: 65 TGYDRRAQLLAYSRHLRNVHSSNTQSPKPKSKKWKWKVRSEAPTVRRMPSRRALQRWRYE 124
Query: 122 RVGMMREERTEVVEQRCLPKCFNG-DYKRSSGRLGSSILRKLKSLMGGLSMGCKRGG 171
RVGMMREERTEVV+Q C PKC G K+S+ R GSSI RKLKSL+G LS GCKR G
Sbjct: 125 RVGMMREERTEVVDQPCRPKCLGGRSNKKSTSRSGSSIFRKLKSLLGELSKGCKRSG 181
BLAST of CmoCh04G024400 vs. ExPASy TrEMBL
Match:
A0A1S3CDS3 (uncharacterized protein LOC103499268 OS=Cucumis melo OX=3656 GN=LOC103499268 PE=4 SV=1)
HSP 1 Score: 181.0 bits (458), Expect = 4.1e-42
Identity = 104/177 (58.76%), Postives = 127/177 (71.75%), Query Frame = 0
Query: 2 EDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNP-ISINKNSHPN---AHPKAPKS 61
E Q++ N + +P K+ VIITVYVESP+ Q++ SH+ I N N+H N + PK P S
Sbjct: 42 EMQSHTNNYQTLPKKQEVIITVYVESPKLQNSNSHKTQIIPHNNNNHINPKPSLPKTPNS 101
Query: 62 RGYDRRAELLAYSRELRNVDSATTHLPKTKS---KWRVKSETAAVRRLPSRRGLRQGRYE 121
GYDRRA+LLAYSR LRNV S+ T P+ KS KW+V+SE VRR+PSRR L++ RYE
Sbjct: 102 TGYDRRAQLLAYSRHLRNVHSSNTQSPQPKSKKWKWKVRSEAPTVRRMPSRRALQRWRYE 161
Query: 122 RVGMMREERTEVVEQRCLPKCFNG-DYKRSSGRLGSSILRKLKSLMGGLSMGCKRGG 171
RVGMMREERTEVV+Q C PKC G K+S+ R GSSI RKLKSL+G LS GCKR G
Sbjct: 162 RVGMMREERTEVVDQPCRPKCLGGRSNKKSTSRSGSSIFRKLKSLLGELSKGCKRSG 218
BLAST of CmoCh04G024400 vs. ExPASy TrEMBL
Match:
A0A6J1CJQ0 (uncharacterized protein LOC111011926 OS=Momordica charantia OX=3673 GN=LOC111011926 PE=4 SV=1)
HSP 1 Score: 124.0 bits (310), Expect = 6.0e-25
Identity = 84/160 (52.50%), Postives = 103/160 (64.38%), Query Frame = 0
Query: 11 KAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGYDRRAELLAYS 70
K P K+ VIITVYVESP K N SHQN + N+ +PK+ + RGYDRRA+LLAYS
Sbjct: 62 KTNPRKDGVIITVYVESP-KSHNNSHQNR---DANALNKINPKS-RGRGYDRRAQLLAYS 121
Query: 71 RELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMREERTEVVEQR 130
R+LRN+DS L K K +V+SET RYERVGM RE+R EVV+QR
Sbjct: 122 RDLRNLDSP---LKPKKWKLKVRSET---------------RYERVGMGREDRAEVVDQR 181
Query: 131 CLPK--CFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKR 169
C PK CF K+++G+ GSSIL K+KSL+ LS GCKR
Sbjct: 182 CRPKCFCFQSRTKKATGKSGSSILMKMKSLLRELSKGCKR 198
BLAST of CmoCh04G024400 vs. NCBI nr
Match:
XP_022962296.1 (uncharacterized protein LOC111462789 [Cucurbita moschata])
HSP 1 Score: 338.6 bits (867), Expect = 3.2e-89
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0
Query: 1 MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY 60
MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY
Sbjct: 1 MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY 60
Query: 61 DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR 120
DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR
Sbjct: 61 DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR 120
Query: 121 EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKRGGW 172
EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKRGGW
Sbjct: 121 EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKRGGW 171
BLAST of CmoCh04G024400 vs. NCBI nr
Match:
KAG6602066.1 (hypothetical protein SDJN03_07299, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032762.1 hypothetical protein SDJN02_06812, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 334.0 bits (855), Expect = 7.8e-88
Identity = 169/171 (98.83%), Postives = 169/171 (98.83%), Query Frame = 0
Query: 1 MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY 60
MEDQTNG EIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY
Sbjct: 1 MEDQTNGKEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY 60
Query: 61 DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR 120
DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR
Sbjct: 61 DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR 120
Query: 121 EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKRGGW 172
EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLS GCKRGGW
Sbjct: 121 EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSKGCKRGGW 171
BLAST of CmoCh04G024400 vs. NCBI nr
Match:
XP_023546181.1 (uncharacterized protein LOC111805357 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 326.6 bits (836), Expect = 1.3e-85
Identity = 165/171 (96.49%), Postives = 167/171 (97.66%), Query Frame = 0
Query: 1 MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY 60
MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY
Sbjct: 1 MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY 60
Query: 61 DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR 120
DRRAELLAYSRELRNVDS TTHLPKTKSKWRVKSETAAVRR+PS+RGLRQGRYERVGM R
Sbjct: 61 DRRAELLAYSRELRNVDSGTTHLPKTKSKWRVKSETAAVRRIPSKRGLRQGRYERVGMTR 120
Query: 121 EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKRGGW 172
EERTEVVEQRCLPKCFNGD KRSSGRLGSSILRKLKSLMGGLS GCKRGGW
Sbjct: 121 EERTEVVEQRCLPKCFNGDDKRSSGRLGSSILRKLKSLMGGLSKGCKRGGW 171
BLAST of CmoCh04G024400 vs. NCBI nr
Match:
XP_022990178.1 (uncharacterized protein LOC111487148 [Cucurbita maxima])
HSP 1 Score: 324.7 bits (831), Expect = 4.8e-85
Identity = 166/171 (97.08%), Postives = 167/171 (97.66%), Query Frame = 0
Query: 1 MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY 60
MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNA PKA KSRGY
Sbjct: 1 MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAPPKATKSRGY 60
Query: 61 DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR 120
DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRR+PSRRGLRQGRYERVGMMR
Sbjct: 61 DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRIPSRRGLRQGRYERVGMMR 120
Query: 121 EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKRGGW 172
EERTEVVEQRCLPKCFNGD KRSSGRLGSSILRKLKSLMGGLS GCKRGGW
Sbjct: 121 EERTEVVEQRCLPKCFNGDDKRSSGRLGSSILRKLKSLMGGLSKGCKRGGW 171
BLAST of CmoCh04G024400 vs. NCBI nr
Match:
XP_004140323.1 (uncharacterized protein LOC101218772 [Cucumis sativus] >KGN50983.1 hypothetical protein Csa_008362 [Cucumis sativus])
HSP 1 Score: 181.8 bits (460), Expect = 5.0e-42
Identity = 104/177 (58.76%), Postives = 126/177 (71.19%), Query Frame = 0
Query: 2 EDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPI-SINKNSHPNAHP---KAPKS 61
E Q++ N + +P K+ VIITVYVESP+ Q++ H+ PI N N++ N P K P S
Sbjct: 5 EMQSHTNNYQTLPKKQEVIITVYVESPKLQNSNPHKTPIVPHNNNNNSNPKPSLRKTPNS 64
Query: 62 RGYDRRAELLAYSRELRNVDSATTHLPKTKS---KWRVKSETAAVRRLPSRRGLRQGRYE 121
GYDRRA+LLAYSR LRNV S+ T PK KS KW+V+SE VRR+PSRR L++ RYE
Sbjct: 65 TGYDRRAQLLAYSRHLRNVHSSNTQSPKPKSKKWKWKVRSEAPTVRRMPSRRALQRWRYE 124
Query: 122 RVGMMREERTEVVEQRCLPKCFNG-DYKRSSGRLGSSILRKLKSLMGGLSMGCKRGG 171
RVGMMREERTEVV+Q C PKC G K+S+ R GSSI RKLKSL+G LS GCKR G
Sbjct: 125 RVGMMREERTEVVDQPCRPKCLGGRSNKKSTSRSGSSIFRKLKSLLGELSKGCKRSG 181
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1HCQ4 | 1.5e-89 | 100.00 | uncharacterized protein LOC111462789 OS=Cucurbita moschata OX=3662 GN=LOC1114627... | [more] |
A0A6J1JSH9 | 2.3e-85 | 97.08 | uncharacterized protein LOC111487148 OS=Cucurbita maxima OX=3661 GN=LOC111487148... | [more] |
A0A0A0KN34 | 2.4e-42 | 58.76 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G385350 PE=4 SV=1 | [more] |
A0A1S3CDS3 | 4.1e-42 | 58.76 | uncharacterized protein LOC103499268 OS=Cucumis melo OX=3656 GN=LOC103499268 PE=... | [more] |
A0A6J1CJQ0 | 6.0e-25 | 52.50 | uncharacterized protein LOC111011926 OS=Momordica charantia OX=3673 GN=LOC111011... | [more] |
Match Name | E-value | Identity | Description | |
XP_022962296.1 | 3.2e-89 | 100.00 | uncharacterized protein LOC111462789 [Cucurbita moschata] | [more] |
KAG6602066.1 | 7.8e-88 | 98.83 | hypothetical protein SDJN03_07299, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_023546181.1 | 1.3e-85 | 96.49 | uncharacterized protein LOC111805357 [Cucurbita pepo subsp. pepo] | [more] |
XP_022990178.1 | 4.8e-85 | 97.08 | uncharacterized protein LOC111487148 [Cucurbita maxima] | [more] |
XP_004140323.1 | 5.0e-42 | 58.76 | uncharacterized protein LOC101218772 [Cucumis sativus] >KGN50983.1 hypothetical ... | [more] |
Match Name | E-value | Identity | Description | |