CmoCh04G024400 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G024400
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr04: 18086516 .. 18087319 (-)
RNA-Seq ExpressionCmoCh04G024400
SyntenyCmoCh04G024400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTGTTTTTTTTTTTTTTTTCTTAGGTTCAATCCAACTCCCCGGAAAGAGACCATAATCCCTCCGGCAAGAAATGGAAGATCAAACAAACGGCAACGAAATCAAAGCCATACCCCCAAAAGAAAGAGTAATCATTACTGTTTATGTTGAATCTCCCAGAAAACAGAGCAATAAGTCCCATCAAAACCCCATTTCCATTAACAAAAACTCTCATCCAAATGCTCATCCCAAAGCCCCTAAATCCAGAGGCTACGATCGTCGGGCTGAGCTTCTTGCGTATTCTCGTGAGCTCAGAAATGTGGATTCTGCTACGACCCACTTGCCCAAAACTAAATCCAAATGGAGGGTGAAATCGGAGACGGCGGCGGTACGGCGACTTCCGTCGAGACGGGGGTTGCGGCAGGGGAGATATGAACGGGTTGGGATGATGAGGGAAGAGAGAACAGAGGTGGTGGAACAGAGATGCTTGCCCAAGTGCTTCAACGGAGATTACAAGAGAAGCAGTGGCCGATTGGGATCTTCCATATTAGTAAATTTCACATTGCATTGAATCGTGTTTTTATTGTTTGTTTGTTTGTTTAGTATGTTGATTAATGTGTTTGTGTTATCAGAGGAAATTGAAGAGTTTGATGGGAGGGTTATCAATGGGCTGCAAACGCGGTGGTTGGTGATGGTTAAGAACAGAAATGGTGGAATGAGATCCGCCATTTGTGTTGAGTTCGTGGGTATCCATTGGGCTCTGAATTAGCAGCGAAATTAAGTCATCTCTGTCTGTTTCAACTCTCCTTTAGTGGTTATGTTGCCT

mRNA sequence

TCTGTTTTTTTTTTTTTTTTCTTAGGTTCAATCCAACTCCCCGGAAAGAGACCATAATCCCTCCGGCAAGAAATGGAAGATCAAACAAACGGCAACGAAATCAAAGCCATACCCCCAAAAGAAAGAGTAATCATTACTGTTTATGTTGAATCTCCCAGAAAACAGAGCAATAAGTCCCATCAAAACCCCATTTCCATTAACAAAAACTCTCATCCAAATGCTCATCCCAAAGCCCCTAAATCCAGAGGCTACGATCGTCGGGCTGAGCTTCTTGCGTATTCTCGTGAGCTCAGAAATGTGGATTCTGCTACGACCCACTTGCCCAAAACTAAATCCAAATGGAGGGTGAAATCGGAGACGGCGGCGGTACGGCGACTTCCGTCGAGACGGGGGTTGCGGCAGGGGAGATATGAACGGGTTGGGATGATGAGGGAAGAGAGAACAGAGGTGGTGGAACAGAGATGCTTGCCCAAGTGCTTCAACGGAGATTACAAGAGAAGCAGTGGCCGATTGGGATCTTCCATATTAAGGAAATTGAAGAGTTTGATGGGAGGGTTATCAATGGGCTGCAAACGCGGTGGTTGGTGATGGTTAAGAACAGAAATGGTGGAATGAGATCCGCCATTTGTGTTGAGTTCGTGGGTATCCATTGGGCTCTGAATTAGCAGCGAAATTAAGTCATCTCTGTCTGTTTCAACTCTCCTTTAGTGGTTATGTTGCCT

Coding sequence (CDS)

ATGGAAGATCAAACAAACGGCAACGAAATCAAAGCCATACCCCCAAAAGAAAGAGTAATCATTACTGTTTATGTTGAATCTCCCAGAAAACAGAGCAATAAGTCCCATCAAAACCCCATTTCCATTAACAAAAACTCTCATCCAAATGCTCATCCCAAAGCCCCTAAATCCAGAGGCTACGATCGTCGGGCTGAGCTTCTTGCGTATTCTCGTGAGCTCAGAAATGTGGATTCTGCTACGACCCACTTGCCCAAAACTAAATCCAAATGGAGGGTGAAATCGGAGACGGCGGCGGTACGGCGACTTCCGTCGAGACGGGGGTTGCGGCAGGGGAGATATGAACGGGTTGGGATGATGAGGGAAGAGAGAACAGAGGTGGTGGAACAGAGATGCTTGCCCAAGTGCTTCAACGGAGATTACAAGAGAAGCAGTGGCCGATTGGGATCTTCCATATTAAGGAAATTGAAGAGTTTGATGGGAGGGTTATCAATGGGCTGCAAACGCGGTGGTTGGTGA

Protein sequence

MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGYDRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMREERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKRGGW
Homology
BLAST of CmoCh04G024400 vs. ExPASy TrEMBL
Match: A0A6J1HCQ4 (uncharacterized protein LOC111462789 OS=Cucurbita moschata OX=3662 GN=LOC111462789 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 1.5e-89
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0

Query: 1   MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY 60
           MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY
Sbjct: 1   MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY 60

Query: 61  DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR 120
           DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR
Sbjct: 61  DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR 120

Query: 121 EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKRGGW 172
           EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKRGGW
Sbjct: 121 EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKRGGW 171

BLAST of CmoCh04G024400 vs. ExPASy TrEMBL
Match: A0A6J1JSH9 (uncharacterized protein LOC111487148 OS=Cucurbita maxima OX=3661 GN=LOC111487148 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.3e-85
Identity = 166/171 (97.08%), Postives = 167/171 (97.66%), Query Frame = 0

Query: 1   MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY 60
           MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNA PKA KSRGY
Sbjct: 1   MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAPPKATKSRGY 60

Query: 61  DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR 120
           DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRR+PSRRGLRQGRYERVGMMR
Sbjct: 61  DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRIPSRRGLRQGRYERVGMMR 120

Query: 121 EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKRGGW 172
           EERTEVVEQRCLPKCFNGD KRSSGRLGSSILRKLKSLMGGLS GCKRGGW
Sbjct: 121 EERTEVVEQRCLPKCFNGDDKRSSGRLGSSILRKLKSLMGGLSKGCKRGGW 171

BLAST of CmoCh04G024400 vs. ExPASy TrEMBL
Match: A0A0A0KN34 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G385350 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.4e-42
Identity = 104/177 (58.76%), Postives = 126/177 (71.19%), Query Frame = 0

Query: 2   EDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPI-SINKNSHPNAHP---KAPKS 61
           E Q++ N  + +P K+ VIITVYVESP+ Q++  H+ PI   N N++ N  P   K P S
Sbjct: 5   EMQSHTNNYQTLPKKQEVIITVYVESPKLQNSNPHKTPIVPHNNNNNSNPKPSLRKTPNS 64

Query: 62  RGYDRRAELLAYSRELRNVDSATTHLPKTKS---KWRVKSETAAVRRLPSRRGLRQGRYE 121
            GYDRRA+LLAYSR LRNV S+ T  PK KS   KW+V+SE   VRR+PSRR L++ RYE
Sbjct: 65  TGYDRRAQLLAYSRHLRNVHSSNTQSPKPKSKKWKWKVRSEAPTVRRMPSRRALQRWRYE 124

Query: 122 RVGMMREERTEVVEQRCLPKCFNG-DYKRSSGRLGSSILRKLKSLMGGLSMGCKRGG 171
           RVGMMREERTEVV+Q C PKC  G   K+S+ R GSSI RKLKSL+G LS GCKR G
Sbjct: 125 RVGMMREERTEVVDQPCRPKCLGGRSNKKSTSRSGSSIFRKLKSLLGELSKGCKRSG 181

BLAST of CmoCh04G024400 vs. ExPASy TrEMBL
Match: A0A1S3CDS3 (uncharacterized protein LOC103499268 OS=Cucumis melo OX=3656 GN=LOC103499268 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 4.1e-42
Identity = 104/177 (58.76%), Postives = 127/177 (71.75%), Query Frame = 0

Query: 2   EDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNP-ISINKNSHPN---AHPKAPKS 61
           E Q++ N  + +P K+ VIITVYVESP+ Q++ SH+   I  N N+H N   + PK P S
Sbjct: 42  EMQSHTNNYQTLPKKQEVIITVYVESPKLQNSNSHKTQIIPHNNNNHINPKPSLPKTPNS 101

Query: 62  RGYDRRAELLAYSRELRNVDSATTHLPKTKS---KWRVKSETAAVRRLPSRRGLRQGRYE 121
            GYDRRA+LLAYSR LRNV S+ T  P+ KS   KW+V+SE   VRR+PSRR L++ RYE
Sbjct: 102 TGYDRRAQLLAYSRHLRNVHSSNTQSPQPKSKKWKWKVRSEAPTVRRMPSRRALQRWRYE 161

Query: 122 RVGMMREERTEVVEQRCLPKCFNG-DYKRSSGRLGSSILRKLKSLMGGLSMGCKRGG 171
           RVGMMREERTEVV+Q C PKC  G   K+S+ R GSSI RKLKSL+G LS GCKR G
Sbjct: 162 RVGMMREERTEVVDQPCRPKCLGGRSNKKSTSRSGSSIFRKLKSLLGELSKGCKRSG 218

BLAST of CmoCh04G024400 vs. ExPASy TrEMBL
Match: A0A6J1CJQ0 (uncharacterized protein LOC111011926 OS=Momordica charantia OX=3673 GN=LOC111011926 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 6.0e-25
Identity = 84/160 (52.50%), Postives = 103/160 (64.38%), Query Frame = 0

Query: 11  KAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGYDRRAELLAYS 70
           K  P K+ VIITVYVESP K  N SHQN    + N+    +PK+ + RGYDRRA+LLAYS
Sbjct: 62  KTNPRKDGVIITVYVESP-KSHNNSHQNR---DANALNKINPKS-RGRGYDRRAQLLAYS 121

Query: 71  RELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMREERTEVVEQR 130
           R+LRN+DS    L   K K +V+SET               RYERVGM RE+R EVV+QR
Sbjct: 122 RDLRNLDSP---LKPKKWKLKVRSET---------------RYERVGMGREDRAEVVDQR 181

Query: 131 CLPK--CFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKR 169
           C PK  CF    K+++G+ GSSIL K+KSL+  LS GCKR
Sbjct: 182 CRPKCFCFQSRTKKATGKSGSSILMKMKSLLRELSKGCKR 198

BLAST of CmoCh04G024400 vs. NCBI nr
Match: XP_022962296.1 (uncharacterized protein LOC111462789 [Cucurbita moschata])

HSP 1 Score: 338.6 bits (867), Expect = 3.2e-89
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0

Query: 1   MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY 60
           MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY
Sbjct: 1   MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY 60

Query: 61  DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR 120
           DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR
Sbjct: 61  DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR 120

Query: 121 EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKRGGW 172
           EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKRGGW
Sbjct: 121 EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKRGGW 171

BLAST of CmoCh04G024400 vs. NCBI nr
Match: KAG6602066.1 (hypothetical protein SDJN03_07299, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032762.1 hypothetical protein SDJN02_06812, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 334.0 bits (855), Expect = 7.8e-88
Identity = 169/171 (98.83%), Postives = 169/171 (98.83%), Query Frame = 0

Query: 1   MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY 60
           MEDQTNG EIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY
Sbjct: 1   MEDQTNGKEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY 60

Query: 61  DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR 120
           DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR
Sbjct: 61  DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR 120

Query: 121 EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKRGGW 172
           EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLS GCKRGGW
Sbjct: 121 EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSKGCKRGGW 171

BLAST of CmoCh04G024400 vs. NCBI nr
Match: XP_023546181.1 (uncharacterized protein LOC111805357 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 326.6 bits (836), Expect = 1.3e-85
Identity = 165/171 (96.49%), Postives = 167/171 (97.66%), Query Frame = 0

Query: 1   MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY 60
           MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY
Sbjct: 1   MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY 60

Query: 61  DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR 120
           DRRAELLAYSRELRNVDS TTHLPKTKSKWRVKSETAAVRR+PS+RGLRQGRYERVGM R
Sbjct: 61  DRRAELLAYSRELRNVDSGTTHLPKTKSKWRVKSETAAVRRIPSKRGLRQGRYERVGMTR 120

Query: 121 EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKRGGW 172
           EERTEVVEQRCLPKCFNGD KRSSGRLGSSILRKLKSLMGGLS GCKRGGW
Sbjct: 121 EERTEVVEQRCLPKCFNGDDKRSSGRLGSSILRKLKSLMGGLSKGCKRGGW 171

BLAST of CmoCh04G024400 vs. NCBI nr
Match: XP_022990178.1 (uncharacterized protein LOC111487148 [Cucurbita maxima])

HSP 1 Score: 324.7 bits (831), Expect = 4.8e-85
Identity = 166/171 (97.08%), Postives = 167/171 (97.66%), Query Frame = 0

Query: 1   MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGY 60
           MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNA PKA KSRGY
Sbjct: 1   MEDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAPPKATKSRGY 60

Query: 61  DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMR 120
           DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRR+PSRRGLRQGRYERVGMMR
Sbjct: 61  DRRAELLAYSRELRNVDSATTHLPKTKSKWRVKSETAAVRRIPSRRGLRQGRYERVGMMR 120

Query: 121 EERTEVVEQRCLPKCFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKRGGW 172
           EERTEVVEQRCLPKCFNGD KRSSGRLGSSILRKLKSLMGGLS GCKRGGW
Sbjct: 121 EERTEVVEQRCLPKCFNGDDKRSSGRLGSSILRKLKSLMGGLSKGCKRGGW 171

BLAST of CmoCh04G024400 vs. NCBI nr
Match: XP_004140323.1 (uncharacterized protein LOC101218772 [Cucumis sativus] >KGN50983.1 hypothetical protein Csa_008362 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 5.0e-42
Identity = 104/177 (58.76%), Postives = 126/177 (71.19%), Query Frame = 0

Query: 2   EDQTNGNEIKAIPPKERVIITVYVESPRKQSNKSHQNPI-SINKNSHPNAHP---KAPKS 61
           E Q++ N  + +P K+ VIITVYVESP+ Q++  H+ PI   N N++ N  P   K P S
Sbjct: 5   EMQSHTNNYQTLPKKQEVIITVYVESPKLQNSNPHKTPIVPHNNNNNSNPKPSLRKTPNS 64

Query: 62  RGYDRRAELLAYSRELRNVDSATTHLPKTKS---KWRVKSETAAVRRLPSRRGLRQGRYE 121
            GYDRRA+LLAYSR LRNV S+ T  PK KS   KW+V+SE   VRR+PSRR L++ RYE
Sbjct: 65  TGYDRRAQLLAYSRHLRNVHSSNTQSPKPKSKKWKWKVRSEAPTVRRMPSRRALQRWRYE 124

Query: 122 RVGMMREERTEVVEQRCLPKCFNG-DYKRSSGRLGSSILRKLKSLMGGLSMGCKRGG 171
           RVGMMREERTEVV+Q C PKC  G   K+S+ R GSSI RKLKSL+G LS GCKR G
Sbjct: 125 RVGMMREERTEVVDQPCRPKCLGGRSNKKSTSRSGSSIFRKLKSLLGELSKGCKRSG 181

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1HCQ41.5e-89100.00uncharacterized protein LOC111462789 OS=Cucurbita moschata OX=3662 GN=LOC1114627... [more]
A0A6J1JSH92.3e-8597.08uncharacterized protein LOC111487148 OS=Cucurbita maxima OX=3661 GN=LOC111487148... [more]
A0A0A0KN342.4e-4258.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G385350 PE=4 SV=1[more]
A0A1S3CDS34.1e-4258.76uncharacterized protein LOC103499268 OS=Cucumis melo OX=3656 GN=LOC103499268 PE=... [more]
A0A6J1CJQ06.0e-2552.50uncharacterized protein LOC111011926 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
Match NameE-valueIdentityDescription
XP_022962296.13.2e-89100.00uncharacterized protein LOC111462789 [Cucurbita moschata][more]
KAG6602066.17.8e-8898.83hypothetical protein SDJN03_07299, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023546181.11.3e-8596.49uncharacterized protein LOC111805357 [Cucurbita pepo subsp. pepo][more]
XP_022990178.14.8e-8597.08uncharacterized protein LOC111487148 [Cucurbita maxima][more]
XP_004140323.15.0e-4258.76uncharacterized protein LOC101218772 [Cucumis sativus] >KGN50983.1 hypothetical ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..60

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G024400.1CmoCh04G024400.1mRNA