CmoCh04G007890 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G007890
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein SPIRAL1-like 5
Location	Cmo_Chr04: 3947614 .. 3948399 (+)
RNA-Seq Expression	CmoCh04G007890
Synteny	CmoCh04G007890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCATCATCATATATATATATATATATATATATAAACAACCAAAATTAGGGTTTGAACTTTCCTTGGTTGCCAATTTTGGTTTTGGTTCAGATCAGATCATGAGCAGAGGTGGAAGCTATGGCGGTGGAAGAAGCTCGTTGGGGTATCTTTTTGGAAACGACGATGAACCCAGAAAGCCTCAAGTCTCAAAAGTGGTTCTTCCTCCTCCTTATGGAATTGATATCAACCCTGATGACCAAAACAACCCTTCCCCCTCTCCAAAACAAGCTGCCTCCAACAATTATCCCCGAGCTCATGGCCAAAACTCGGGCAACTTCATCACGGTAAACCCCCTCTCTACTTTGTTCTTGAGATTTCAAATCATGGGATTTAAAGATGATTTCTTGAAAATTCTCAGGATCGCCCATCAACCAAGGTCAAATCTGTTCCTGGTGGTGATTCATCGCTAGGGTATCTGTTTGGAGATAAGTGAAGTGAAGTGAATGATTTATGTGTTCCATCAGTAGCTGACCATATTGGAACTCTAAAGGGTATGTATGCTTTGCTTTAGTGTGCGGATTTGTAATAAATTGTGTGCAATTATTATGTATCTCAACCAACACTTAGCCTGAATTATATTTGTGTACCTTGTTGCTTCTACCAAATATGTTATGTATTCAATAGCATCGTGCCGACTTGTGGTTTGATTATGTTTGTGGTTAAGTATAAGAAATTCCACTTTTCCTTTAATTCGGGTGTTTCAATTCATTGTGCTTGTGCTTGCTTTAAAGATTCATATTAAACAAT

mRNA sequence

TCATCATCATATATATATATATATATATATATAAACAACCAAAATTAGGGTTTGAACTTTCCTTGGTTGCCAATTTTGGTTTTGGTTCAGATCAGATCATGAGCAGAGGTGGAAGCTATGGCGGTGGAAGAAGCTCGTTGGGGTATCTTTTTGGAAACGACGATGAACCCAGAAAGCCTCAAGTCTCAAAAGTGGTTCTTCCTCCTCCTTATGGAATTGATATCAACCCTGATGACCAAAACAACCCTTCCCCCTCTCCAAAACAAGCTGCCTCCAACAATTATCCCCGAGCTCATGGCCAAAACTCGGGCAACTTCATCACGGATCGCCCATCAACCAAGGTCAAATCTGTTCCTGGTGGTGATTCATCGCTAGGGTATCTGTTTGGAGATAAGTGAAGTGAAGTGAATGATTTATGTGTTCCATCAGTAGCTGACCATATTGGAACTCTAAAGGGTATGTATGCTTTGCTTTAGTGTGCGGATTTGTAATAAATTGTGTGCAATTATTATGTATCTCAACCAACACTTAGCCTGAATTATATTTGTGTACCTTGTTGCTTCTACCAAATATGTTATGTATTCAATAGCATCGTGCCGACTTGTGGTTTGATTATGTTTGTGGTTAAGTATAAGAAATTCCACTTTTCCTTTAATTCGGGTGTTTCAATTCATTGTGCTTGTGCTTGCTTTAAAGATTCATATTAAACAAT

Coding sequence (CDS)

ATGAGCAGAGGTGGAAGCTATGGCGGTGGAAGAAGCTCGTTGGGGTATCTTTTTGGAAACGACGATGAACCCAGAAAGCCTCAAGTCTCAAAAGTGGTTCTTCCTCCTCCTTATGGAATTGATATCAACCCTGATGACCAAAACAACCCTTCCCCCTCTCCAAAACAAGCTGCCTCCAACAATTATCCCCGAGCTCATGGCCAAAACTCGGGCAACTTCATCACGGATCGCCCATCAACCAAGGTCAAATCTGTTCCTGGTGGTGATTCATCGCTAGGGTATCTGTTTGGAGATAAGTGA

Protein sequence

MSRGGSYGGGRSSLGYLFGNDDEPRKPQVSKVVLPPPYGIDINPDDQNNPSPSPKQAASNNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK

Homology

[Close]

BLAST of CmoCh04G007890 vs. ExPASy Swiss-Prot
Match: Q8LGD1 (Protein SPIRAL1-like 5 OS=Arabidopsis thaliana OX=3702 GN=SP1L5 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-25
Identity = 64/101 (63.37%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGNDDE-PRKPQVSKVVLP-PPYGIDINPDDQNNPSPSPKQAA 60
           MSRGGS+GGG+SSLGYLFG+D+E P+ P       P PPYG+D   +D +     PK  +
Sbjct: 1   MSRGGSFGGGQSSLGYLFGSDNEIPKTPAPPVAPKPAPPYGVDSTEED-HEADQKPK-IS 60

Query: 61  SNNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK 100
           +NNY R  GQNSGNF+TDRP+TKVKSVPGG SSLGYLFGDK
Sbjct: 61  NNNYQRVQGQNSGNFVTDRPTTKVKSVPGGGSSLGYLFGDK 99

[Close]

BLAST of CmoCh04G007890 vs. ExPASy Swiss-Prot
Match: Q7Y1L9 (Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0417800 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.0e-18
Identity = 55/114 (48.25%), Postives = 66/114 (57.89%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGNDDEPR-----KPQVSKVVLPPPYGIDINPDDQNNPSPSPK 60
           MSRGGS GGG+SSLGYLFG ++ P+      P  +    P P            PSP+  
Sbjct: 1   MSRGGSAGGGQSSLGYLFGGNEAPKPAAKPAPAAAPAPAPAPAPAAAVAAPAEKPSPAKA 60

Query: 61  QA------------ASNNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFG 98
            A            ++NNY RA GQN+GNF+TDRPSTKV + PGG SSLGYLFG
Sbjct: 61  DATKQIPAGIQGSRSNNNYHRADGQNTGNFLTDRPSTKVHAAPGGGSSLGYLFG 114

[Close]

BLAST of CmoCh04G007890 vs. ExPASy Swiss-Prot
Match: B3H4F1 (Protein SPIRAL1-like 1 OS=Arabidopsis thaliana OX=3702 GN=SP1L1 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.3e-17
Identity = 55/115 (47.83%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGNDDEPRKPQVSKVVLPPPYGIDINPDDQNNPSPSPKQAA-- 60
           M RG S GGG+SSLGYLFG+ + P KP ++    P    + I+ D      PSPK  A  
Sbjct: 1   MGRGVSVGGGQSSLGYLFGSGEAP-KPAINNAPAPSSETLPISAD------PSPKHVAAQ 60

Query: 61  ----------------SNNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFG 98
                           +NNY RA GQN+GNF+TDRPSTKV + PGG SSL YLFG
Sbjct: 61  TVNVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFG 108

[Close]

BLAST of CmoCh04G007890 vs. ExPASy Swiss-Prot
Match: Q9LE54 (Protein SPIRAL1-like 2 OS=Arabidopsis thaliana OX=3702 GN=SP1L2 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.3e-17
Identity = 54/106 (50.94%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGNDDEPRKPQVSKVV--------LPPPYGIDINPDDQNNPSP 60
           M RG S GGG+SSLGYLFG+ + P+   V+K           PP      N  D     P
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQAAAANAVDSIKQVP 60

Query: 61  SPKQA-ASNNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFG 98
           +   + ++NNY RA GQN+GNFITDRPSTKV S PGG SSL YLFG
Sbjct: 61  AGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFG 106

[Close]

BLAST of CmoCh04G007890 vs. ExPASy Swiss-Prot
Match: Q2QQ99 (Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0502000 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.1e-15
Identity = 48/97 (49.48%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 1  MSRGGSYGGGRSSLGYLFGNDDEPRKPQVSKVVLPPPYGIDINPDDQNNPSPSPKQAA-S 60
          M RG S GGG+SSLGYLFG  + P+  +    V  P      +  ++    P+  Q++ +
Sbjct: 1  MGRGVSSGGGQSSLGYLFGGGEAPKSAEKPAPVQKP---APSSSAEKLKEIPAGIQSSKA 60

Query: 61 NNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLF 97
          NNY RA GQN GNF+TDRPSTKV++ PGG SSL YLF
Sbjct: 61 NNYMRAEGQNCGNFLTDRPSTKVQAAPGGGSSLDYLF 94

[Close]

BLAST of CmoCh04G007890 vs. ExPASy TrEMBL
Match: A0A6J1J7K0 (protein SPIRAL1-like 5 OS=Cucurbita maxima OX=3661 GN=LOC111482082 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.0e-49
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGNDDEPRKPQVSKVVLPPPYGIDINPDDQNNPSPSPKQAASN 60
           MSRGGSYGGGRSSLGYLFGNDDEPRKPQVSKVVLPPPYGIDINPDDQNNPSPSPKQAASN
Sbjct: 1   MSRGGSYGGGRSSLGYLFGNDDEPRKPQVSKVVLPPPYGIDINPDDQNNPSPSPKQAASN 60

Query: 61  NYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK 100
           NYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK
Sbjct: 61  NYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK 99

[Close]

BLAST of CmoCh04G007890 vs. ExPASy TrEMBL
Match: A0A6J1FLH4 (protein SPIRAL1-like 5 OS=Cucurbita moschata OX=3662 GN=LOC111446889 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.0e-49
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGNDDEPRKPQVSKVVLPPPYGIDINPDDQNNPSPSPKQAASN 60
           MSRGGSYGGGRSSLGYLFGNDDEPRKPQVSKVVLPPPYGIDINPDDQNNPSPSPKQAASN
Sbjct: 1   MSRGGSYGGGRSSLGYLFGNDDEPRKPQVSKVVLPPPYGIDINPDDQNNPSPSPKQAASN 60

Query: 61  NYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK 100
           NYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK
Sbjct: 61  NYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK 99

[Close]

BLAST of CmoCh04G007890 vs. ExPASy TrEMBL
Match: A0A6J1C4I1 (protein SPIRAL1-like 5 OS=Momordica charantia OX=3673 GN=LOC111008404 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.2e-43
Identity = 89/100 (89.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGNDDEPRKPQVSKVVLPPPYGIDINPDDQ-NNPSPSPKQAAS 60
           MSRGGSYGGGRSSLGYLFGNDD+P KPQVS+V+LPPPYGIDI+PDDQ NNPSPSPKQ  S
Sbjct: 1   MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLVS 60

Query: 61  NNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK 100
           NNYPRAHGQNSGNF+TDRPSTKVKS PG DSSLGYLFGDK
Sbjct: 61  NNYPRAHGQNSGNFLTDRPSTKVKSAPGXDSSLGYLFGDK 100

[Close]

BLAST of CmoCh04G007890 vs. ExPASy TrEMBL
Match: A0A5D3CZ49 (Protein SPIRAL1-like 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004680 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.7e-43
Identity = 92/102 (90.20%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGNDDEPRKPQVSKVVLPPPYGIDINPDD--QNNPSPSPKQAA 60
           MSRGGSYGGGRSSLGYLFG DD+PRKPQVSKVVLPPPYGID+NPDD   NNPSPSPKQ  
Sbjct: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDDHHNNPSPSPKQLV 60

Query: 61  S-NNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK 100
           S NNYPRAHGQNSGNFITDRPSTKVKS PGGDSSLGYLFGDK
Sbjct: 61  SKNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGDK 102

[Close]

BLAST of CmoCh04G007890 vs. ExPASy TrEMBL
Match: A0A1S3BTQ0 (protein SPIRAL1-like 5 OS=Cucumis melo OX=3656 GN=LOC103493166 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.7e-43
Identity = 92/102 (90.20%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGNDDEPRKPQVSKVVLPPPYGIDINPDD--QNNPSPSPKQAA 60
           MSRGGSYGGGRSSLGYLFG DD+PRKPQVSKVVLPPPYGID+NPDD   NNPSPSPKQ  
Sbjct: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDDHHNNPSPSPKQLV 60

Query: 61  S-NNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK 100
           S NNYPRAHGQNSGNFITDRPSTKVKS PGGDSSLGYLFGDK
Sbjct: 61  SKNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGDK 102

[Close]

BLAST of CmoCh04G007890 vs. NCBI nr
Match: XP_022941576.1 (protein SPIRAL1-like 5 [Cucurbita moschata] >XP_022983494.1 protein SPIRAL1-like 5 [Cucurbita maxima] >XP_023545276.1 protein SPIRAL1-like 5 [Cucurbita pepo subsp. pepo] >KAG6600565.1 Protein SPIRAL1-like 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031205.1 Protein SPIRAL1-like 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.5 bits (519), Expect = 4.2e-49
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGNDDEPRKPQVSKVVLPPPYGIDINPDDQNNPSPSPKQAASN 60
           MSRGGSYGGGRSSLGYLFGNDDEPRKPQVSKVVLPPPYGIDINPDDQNNPSPSPKQAASN
Sbjct: 1   MSRGGSYGGGRSSLGYLFGNDDEPRKPQVSKVVLPPPYGIDINPDDQNNPSPSPKQAASN 60

Query: 61  NYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK 100
           NYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK
Sbjct: 61  NYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK 99

[Close]

BLAST of CmoCh04G007890 vs. NCBI nr
Match: XP_038883008.1 (protein SPIRAL1-like 5 [Benincasa hispida])

HSP 1 Score: 188.3 bits (477), Expect = 3.1e-44
Identity = 92/101 (91.09%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGNDDEPRKPQVSKVVLPPPYGIDINPDD--QNNPSPSPKQAA 60
           MSRGGSYGGGRSSLGYLFG DD+PRKPQVSKVVLPPPYGID+NPDD   NNPSPSPKQ  
Sbjct: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDNNNNNPSPSPKQLV 60

Query: 61  SNNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK 100
           SNNYPRAHGQNSGNFITDRPSTKVKS PGGDSSLGYLFGDK
Sbjct: 61  SNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGDK 101

[Close]

BLAST of CmoCh04G007890 vs. NCBI nr
Match: XP_022136791.1 (protein SPIRAL1-like 5 [Momordica charantia])

HSP 1 Score: 184.5 bits (467), Expect = 4.4e-43
Identity = 89/100 (89.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGNDDEPRKPQVSKVVLPPPYGIDINPDDQ-NNPSPSPKQAAS 60
           MSRGGSYGGGRSSLGYLFGNDD+P KPQVS+V+LPPPYGIDI+PDDQ NNPSPSPKQ  S
Sbjct: 1   MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLVS 60

Query: 61  NNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK 100
           NNYPRAHGQNSGNF+TDRPSTKVKS PG DSSLGYLFGDK
Sbjct: 61  NNYPRAHGQNSGNFLTDRPSTKVKSAPGXDSSLGYLFGDK 100

[Close]

BLAST of CmoCh04G007890 vs. NCBI nr
Match: XP_008452039.1 (PREDICTED: protein SPIRAL1-like 5 [Cucumis melo] >KAA0044824.1 protein SPIRAL1-like 5 [Cucumis melo var. makuwa] >TYK16640.1 protein SPIRAL1-like 5 [Cucumis melo var. makuwa])

HSP 1 Score: 183.7 bits (465), Expect = 7.6e-43
Identity = 92/102 (90.20%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGNDDEPRKPQVSKVVLPPPYGIDINPDD--QNNPSPSPKQAA 60
           MSRGGSYGGGRSSLGYLFG DD+PRKPQVSKVVLPPPYGID+NPDD   NNPSPSPKQ  
Sbjct: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDDHHNNPSPSPKQLV 60

Query: 61  S-NNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK 100
           S NNYPRAHGQNSGNFITDRPSTKVKS PGGDSSLGYLFGDK
Sbjct: 61  SKNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGDK 102

[Close]

BLAST of CmoCh04G007890 vs. NCBI nr
Match: XP_004146520.1 (protein SPIRAL1-like 5 [Cucumis sativus] >KGN53333.1 hypothetical protein Csa_015032 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 2.2e-42
Identity = 91/100 (91.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGNDDEPRKPQVSKVVLPPPYGIDINPDD-QNNPSPSPKQAAS 60
           MSRGGSYGGGRSSLGYLFG DD+PRKPQVSKVVLPPPYGID+NPDD  NNPSPSPKQ  S
Sbjct: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDHNNNPSPSPKQLVS 60

Query: 61  -NNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGD 99
            NNYPRAHGQNSGNFITDRPSTKVKS PGGDSSLGYLFGD
Sbjct: 61  NNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGD 100

[Close]

BLAST of CmoCh04G007890 vs. TAIR 10
Match: AT4G23496.1 (SPIRAL1-like5 )

HSP 1 Score: 117.1 bits (292), Expect = 8.1e-27
Identity = 64/101 (63.37%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGNDDE-PRKPQVSKVVLP-PPYGIDINPDDQNNPSPSPKQAA 60
           MSRGGS+GGG+SSLGYLFG+D+E P+ P       P PPYG+D   +D +     PK  +
Sbjct: 1   MSRGGSFGGGQSSLGYLFGSDNEIPKTPAPPVAPKPAPPYGVDSTEED-HEADQKPK-IS 60

Query: 61  SNNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGDK 100
           +NNY R  GQNSGNF+TDRP+TKVKSVPGG SSLGYLFGDK
Sbjct: 61  NNNYQRVQGQNSGNFVTDRPTTKVKSVPGGGSSLGYLFGDK 99

[Close]

BLAST of CmoCh04G007890 vs. TAIR 10
Match: AT1G69230.1 (SPIRAL1-like2 )

HSP 1 Score: 89.0 bits (219), Expect = 2.4e-18
Identity = 54/106 (50.94%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGNDDEPRKPQVSKVV--------LPPPYGIDINPDDQNNPSP 60
           M RG S GGG+SSLGYLFG+ + P+   V+K           PP      N  D     P
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQAAAANAVDSIKQVP 60

Query: 61  SPKQA-ASNNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFG 98
           +   + ++NNY RA GQN+GNFITDRPSTKV S PGG SSL YLFG
Sbjct: 61  AGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFG 106

[Close]

BLAST of CmoCh04G007890 vs. TAIR 10
Match: AT1G69230.2 (SPIRAL1-like2 )

HSP 1 Score: 89.0 bits (219), Expect = 2.4e-18
Identity = 54/106 (50.94%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGNDDEPRKPQVSKVV--------LPPPYGIDINPDDQNNPSP 60
           M RG S GGG+SSLGYLFG+ + P+   V+K           PP      N  D     P
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQAAAANAVDSIKQVP 60

Query: 61  SPKQA-ASNNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFG 98
           +   + ++NNY RA GQN+GNFITDRPSTKV S PGG SSL YLFG
Sbjct: 61  AGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFG 106

[Close]

BLAST of CmoCh04G007890 vs. TAIR 10
Match: AT1G26355.1 (SPIRAL1-like1 )

HSP 1 Score: 89.0 bits (219), Expect = 2.4e-18
Identity = 55/115 (47.83%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGNDDEPRKPQVSKVVLPPPYGIDINPDDQNNPSPSPKQAA-- 60
           M RG S GGG+SSLGYLFG+ + P KP ++    P    + I+ D      PSPK  A  
Sbjct: 1   MGRGVSVGGGQSSLGYLFGSGEAP-KPAINNAPAPSSETLPISAD------PSPKHVAAQ 60

Query: 61  ----------------SNNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFG 98
                           +NNY RA GQN+GNF+TDRPSTKV + PGG SSL YLFG
Sbjct: 61  TVNVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFG 108

[Close]

BLAST of CmoCh04G007890 vs. TAIR 10
Match: AT2G03680.1 (spiral1 )

HSP 1 Score: 80.9 bits (198), Expect = 6.5e-16
Identity = 50/115 (43.48%), Postives = 61/115 (53.04%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGNDDEPRKP---------QVSKVVLPPPYGI----------D 60
           M RG S GGG+SSL YLFG D    KP         + +    PP   +           
Sbjct: 1   MGRGNSCGGGQSSLDYLFGGDAPAPKPVPAPRPAPTESNNGPAPPVTAVTATALTTATTS 60

Query: 61  INPDDQNNPSPSPKQAASNNYPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLF 97
           + P + N   P+  +   NNY RA GQN+GNF+TDRPSTKV + PGG SSL YLF
Sbjct: 61  VEPAELNKQIPAGIKTPVNNYARAEGQNTGNFLTDRPSTKVHAAPGGGSSLDYLF 115

The following BLAST results are available for this feature:

BLAST of CmoCh04G007890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LGD1	1.1e-25	63.37	Protein SPIRAL1-like 5 OS=Arabidopsis thaliana OX=3702 GN=SP1L5 PE=2 SV=1	[more]
Q7Y1L9	3.0e-18	48.25	Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0417800 ...	[more]
B3H4F1	3.3e-17	47.83	Protein SPIRAL1-like 1 OS=Arabidopsis thaliana OX=3702 GN=SP1L1 PE=2 SV=1	[more]
Q9LE54	3.3e-17	50.94	Protein SPIRAL1-like 2 OS=Arabidopsis thaliana OX=3702 GN=SP1L2 PE=2 SV=1	[more]
Q2QQ99	9.1e-15	49.48	Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0502000 ...	[more]

BLAST of CmoCh04G007890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J7K0	2.0e-49	100.00	protein SPIRAL1-like 5 OS=Cucurbita maxima OX=3661 GN=LOC111482082 PE=3 SV=1	[more]
A0A6J1FLH4	2.0e-49	100.00	protein SPIRAL1-like 5 OS=Cucurbita moschata OX=3662 GN=LOC111446889 PE=3 SV=1	[more]
A0A6J1C4I1	2.2e-43	89.00	protein SPIRAL1-like 5 OS=Momordica charantia OX=3673 GN=LOC111008404 PE=3 SV=1	[more]
A0A5D3CZ49	3.7e-43	90.20	Protein SPIRAL1-like 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A1S3BTQ0	3.7e-43	90.20	protein SPIRAL1-like 5 OS=Cucumis melo OX=3656 GN=LOC103493166 PE=3 SV=1	[more]

BLAST of CmoCh04G007890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941576.1	4.2e-49	100.00	protein SPIRAL1-like 5 [Cucurbita moschata] >XP_022983494.1 protein SPIRAL1-like...	[more]
XP_038883008.1	3.1e-44	91.09	protein SPIRAL1-like 5 [Benincasa hispida]	[more]
XP_022136791.1	4.4e-43	89.00	protein SPIRAL1-like 5 [Momordica charantia]	[more]
XP_008452039.1	7.6e-43	90.20	PREDICTED: protein SPIRAL1-like 5 [Cucumis melo] >KAA0044824.1 protein SPIRAL1-l...	[more]
XP_004146520.1	2.2e-42	91.00	protein SPIRAL1-like 5 [Cucumis sativus] >KGN53333.1 hypothetical protein Csa_01...	[more]

BLAST of CmoCh04G007890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23496.1	8.1e-27	63.37	SPIRAL1-like5	[more]
AT1G69230.1	2.4e-18	50.94	SPIRAL1-like2	[more]
AT1G69230.2	2.4e-18	50.94	SPIRAL1-like2	[more]
AT1G26355.1	2.4e-18	47.83	SPIRAL1-like1	[more]
AT2G03680.1	6.5e-16	43.48	spiral1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..99
None	No IPR available	PANTHER	PTHR33403:SF19	PROTEIN SPIRAL1-LIKE 5	coord: 1..99
IPR039613	Protein SPIRAL1-like	PANTHER	PTHR33403	SPR1	coord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G007890.1	CmoCh04G007890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043622	cortical microtubule organization
cellular_component	GO:0010005	cortical microtubule, transverse to long axis