CmoCh04G004660 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G004660
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Phytosulfokine-beta
Location	Cmo_Chr04: 2331865 .. 2332396 (+)
RNA-Seq Expression	CmoCh04G004660
Synteny	CmoCh04G004660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAAGCTTGTGACCTCCATCTTCACGTTTCTCTTCCTTTTCTTCTTTTTATTCTCCTCGACGACCTCCGTTTTTGCTCGGCCCATTCCCGGCTCTACAAACATGTCTCCTGGGACTACTCGAGACGGGGTACGTGAATTTATCAATATTTTCTCTAGCTAATATAATGCCTGATTAAAAGCAGTAAATATTGAGGTTTTTTATTTTTTTTTATTTTTTTTTGTGAAGTTTAAGGTTGTGGATGATGTTTTGGAAGAGGAGAGCTGTGGAATTGGAGAAGAACATTGCTTGATGAGGAAAACTCTTGCAGCCCATGCTGATTATATCTACACAGATAAGCAAAGACCATGAAGATTATTTGCACCTCATTCTTCGGCTCGAATCTTTGACCTTTTGGTCAAATGTATATTCTTAACCAATTGAGTTATGTTCCGGTTGATCAAATCCGATATACTAAACTTAAATTTAGTTACTTCTTTCGGGTCATGATATCATATTGTGTATTCCATGTCAACATGTCCGTGCA

mRNA sequence

ATGGCTTCCAAGCTTGTGACCTCCATCTTCACGTTTCTCTTCCTTTTCTTCTTTTTATTCTCCTCGACGACCTCCGTTTTTGCTCGGCCCATTCCCGGCTCTACAAACATGTCTCCTGGGACTACTCGAGACGGGTTTAAGGTTGTGGATGATGTTTTGGAAGAGGAGAGCTGTGGAATTGGAGAAGAACATTGCTTGATGAGGAAAACTCTTGCAGCCCATGCTGATTATATCTACACAGATAAGCAAAGACCATGAAGATTATTTGCACCTCATTCTTCGGCTCGAATCTTTGACCTTTTGGTCAAATGTATATTCTTAACCAATTGAGTTATGTTCCGGTTGATCAAATCCGATATACTAAACTTAAATTTAGTTACTTCTTTCGGGTCATGATATCATATTGTGTATTCCATGTCAACATGTCCGTGCA

Coding sequence (CDS)

ATGGCTTCCAAGCTTGTGACCTCCATCTTCACGTTTCTCTTCCTTTTCTTCTTTTTATTCTCCTCGACGACCTCCGTTTTTGCTCGGCCCATTCCCGGCTCTACAAACATGTCTCCTGGGACTACTCGAGACGGGTTTAAGGTTGTGGATGATGTTTTGGAAGAGGAGAGCTGTGGAATTGGAGAAGAACATTGCTTGATGAGGAAAACTCTTGCAGCCCATGCTGATTATATCTACACAGATAAGCAAAGACCATGA

Protein sequence

MASKLVTSIFTFLFLFFFLFSSTTSVFARPIPGSTNMSPGTTRDGFKVVDDVLEEESCGIGEEHCLMRKTLAAHADYIYTDKQRP

Homology

[Close]

BLAST of CmoCh04G004660 vs. ExPASy Swiss-Prot
Match: Q9FS10 (Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-07
Identity = 34/86 (39.53%), Postives = 47/86 (54.65%), Query Frame = 0


Query: 1  MASKLVTSIFTFLFLFFFLFSSTTSVFARPIPGSTNMSPGTTRDGFKVVDDVLEEESC-G 60
          M+SK +T     L L   LFS + +  ARP      + P  +     V+ + + +E+C G
Sbjct: 1  MSSKAIT-----LLLIALLFSLSLAQAARP------LQPADSTKSVHVIPEKVHDEACEG 60

Query: 61 IGEEHCLMRKTLAAHADYIYTDKQRP 86
          +GEE CLMR+TL AH DYIYT    P
Sbjct: 61 VGEEECLMRRTLTAHVDYIYTQDHNP 75

[Close]

BLAST of CmoCh04G004660 vs. ExPASy Swiss-Prot
Match: Q9M2Y0 (Phytosulfokines 3 OS=Arabidopsis thaliana OX=3702 GN=PSK3 PE=2 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 6.0e-07
Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 10 FTFLFLFFFLFSSTTSVFARPIPGSTNMSPGTTRDGFKVVDDVLEEESC-GIGEEHCLMR 69
          FT +F+   L  ST +  AR  P +T  +        ++  D +EEESC GIGEE CL+R
Sbjct: 4  FTTIFIMALLLCSTLTYAARLTP-TTTTALSRENSVKEIEGDKVEEESCNGIGEEECLIR 63

Query: 70 KTLAAHADYIYTDKQRP 86
          ++L  H DYIYT   +P
Sbjct: 64 RSLVLHTDYIYTQNHKP 79

[Close]

BLAST of CmoCh04G004660 vs. ExPASy Swiss-Prot
Match: O81003 (Phytosulfokines 2 OS=Arabidopsis thaliana OX=3702 GN=PSK2 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 9.6e-05
Identity = 31/80 (38.75%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 13 LFLFFFLFSSTTSVFARPIPGSTNMSPGTTRDGFKV-------VDDV-LEEESCGIGEEH 72
          L     L  ST    ARP P + ++S  T  D   +       +DD+ + +E+CG  +E 
Sbjct: 7  LLTIALLLCSTLMCTARPEP-AISISITTAADPCNMEKKIEGKLDDMHMVDENCGADDED 66

Query: 73 CLMRKTLAAHADYIYTDKQR 85
          CLMR+TL AH DYIYT K++
Sbjct: 67 CLMRRTLVAHTDYIYTQKKK 85

[Close]

BLAST of CmoCh04G004660 vs. ExPASy TrEMBL
Match: A0A6J1FNZ6 (Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111447189 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.6e-39
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MASKLVTSIFTFLFLFFFLFSSTTSVFARPIPGSTNMSPGTTRDGFKVVDDVLEEESCGI 60
          MASKLVTSIFTFLFLFFFLFSSTTSVFARPIPGSTNMSPGTTRDGFKVVDDVLEEESCGI
Sbjct: 1  MASKLVTSIFTFLFLFFFLFSSTTSVFARPIPGSTNMSPGTTRDGFKVVDDVLEEESCGI 60

Query: 61 GEEHCLMRKTLAAHADYIYTDKQRP 86
          GEEHCLMRKTLAAHADYIYTDKQRP
Sbjct: 61 GEEHCLMRKTLAAHADYIYTDKQRP 85

[Close]

BLAST of CmoCh04G004660 vs. ExPASy TrEMBL
Match: A0A6J1E4U5 (Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111430788 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.7e-23
Identity = 63/87 (72.41%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1  MASKLVTSIFTFLFLFFFLFSSTTSVFAR--PIPGSTNMSPGTTRDGFKVVDDVLEEESC 60
          MASKL+TSIFTFLFLFF   SS T++ AR  P+PG +N  PGT+RDG K  DD LEEESC
Sbjct: 1  MASKLLTSIFTFLFLFFSFVSSATTIGARPVPVPGFSNAFPGTSRDGLKAGDDALEEESC 60

Query: 61 -GIGEEHCLMRKTLAAHADYIYTDKQR 85
            IGEE+CLMRKTLAAHADYIYTD QR
Sbjct: 61 EEIGEEYCLMRKTLAAHADYIYTDSQR 87

[Close]

BLAST of CmoCh04G004660 vs. ExPASy TrEMBL
Match: A0A6J1D6J2 (Phytosulfokine-beta OS=Momordica charantia OX=3673 GN=LOC111017778 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.1e-22
Identity = 62/88 (70.45%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 1  MASKLVTSIFTFLFLFFFLFSST--TSVFARPIPGSTNMSPGTTRDGFKVVDDVLEEESC 60
          MASKL+T+ FTFL LFFF F S+   +V ARP+P   N  P TTR G KVVDDVLEEESC
Sbjct: 1  MASKLLTTFFTFLSLFFFFFFSSLAITVAARPVPDFPNAFPATTRHGLKVVDDVLEEESC 60

Query: 61 -GIGEEHCLMRKTLAAHADYIYTDKQRP 86
           GIGEE+CLMRKTLAAH DYIYTD Q P
Sbjct: 61 GGIGEEYCLMRKTLAAHLDYIYTDNQEP 88

[Close]

BLAST of CmoCh04G004660 vs. ExPASy TrEMBL
Match: A0A0A0KY18 (Phytosulfokine-beta OS=Cucumis sativus OX=3659 GN=Csa_4G000620 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.8e-22
Identity = 62/87 (71.26%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 1  MASKLVTSIFTFLFLF-FFLFSSTTSVFARPIPGSTNMSPGTTRDGFKVVDDVLEEESCG 60
          MASKL TSI+ FLFLF FF  SSTT + ARP+PG +N   GT+RDG  V DDVLEEESC 
Sbjct: 1  MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEESCD 60

Query: 61 -IGEEHCLMRKTLAAHADYIYTDKQRP 86
           IGEE+CLMRKTLAAH DYIYTD Q+P
Sbjct: 61 EIGEEYCLMRKTLAAHVDYIYTDTQKP 87

[Close]

BLAST of CmoCh04G004660 vs. ExPASy TrEMBL
Match: A0A6J1JBS4 (Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111483027 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-21
Identity = 61/87 (70.11%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 1   MASKLVTSIFTFLFLFFFLFSSTTSVFAR--PIPGSTNMSPGTTRDGFKVVDDVLEEESC 60
           MA KL+TSIFTFLFLFF   SS T++ AR  P+PG +N  PGT+RD  K  DD LEEESC
Sbjct: 37  MAPKLLTSIFTFLFLFFSFVSSVTTIGARPVPVPGFSNAFPGTSRDELKAGDDALEEESC 96

Query: 61  -GIGEEHCLMRKTLAAHADYIYTDKQR 85
             IGEE+CLMRKTLAAHADYIYTD QR
Sbjct: 97  EEIGEEYCLMRKTLAAHADYIYTDSQR 123

[Close]

BLAST of CmoCh04G004660 vs. NCBI nr
Match: XP_022941982.1 (phytosulfokines-like [Cucurbita moschata])

HSP 1 Score: 170.2 bits (430), Expect = 7.5e-39
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MASKLVTSIFTFLFLFFFLFSSTTSVFARPIPGSTNMSPGTTRDGFKVVDDVLEEESCGI 60
          MASKLVTSIFTFLFLFFFLFSSTTSVFARPIPGSTNMSPGTTRDGFKVVDDVLEEESCGI
Sbjct: 1  MASKLVTSIFTFLFLFFFLFSSTTSVFARPIPGSTNMSPGTTRDGFKVVDDVLEEESCGI 60

Query: 61 GEEHCLMRKTLAAHADYIYTDKQRP 86
          GEEHCLMRKTLAAHADYIYTDKQRP
Sbjct: 61 GEEHCLMRKTLAAHADYIYTDKQRP 85

[Close]

BLAST of CmoCh04G004660 vs. NCBI nr
Match: KAG6600274.1 (Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 163.3 bits (412), Expect = 9.1e-37
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 1  MASKLVTSIFTFLFLFFFLFSSTTSVFARPIPGSTNMSPGTTRDGFKVVDDVLEEESCGI 60
          MASKLVTSIFTFLFLFFFLFSSTTSVFA+PIPGSTN SP TTRDGFKVVDDVLEEESCGI
Sbjct: 1  MASKLVTSIFTFLFLFFFLFSSTTSVFAQPIPGSTNTSPRTTRDGFKVVDDVLEEESCGI 60

Query: 61 GEEHCLMRKTLAAHADYIYTDKQRP 86
          GEEHCLMRKTLAAHADYIYTDKQRP
Sbjct: 61 GEEHCLMRKTLAAHADYIYTDKQRP 85

[Close]

BLAST of CmoCh04G004660 vs. NCBI nr
Match: XP_022922962.1 (phytosulfokines-like [Cucurbita moschata] >KAG6576906.1 Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116.7 bits (291), Expect = 9.8e-23
Identity = 63/87 (72.41%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1  MASKLVTSIFTFLFLFFFLFSSTTSVFAR--PIPGSTNMSPGTTRDGFKVVDDVLEEESC 60
          MASKL+TSIFTFLFLFF   SS T++ AR  P+PG +N  PGT+RDG K  DD LEEESC
Sbjct: 1  MASKLLTSIFTFLFLFFSFVSSATTIGARPVPVPGFSNAFPGTSRDGLKAGDDALEEESC 60

Query: 61 -GIGEEHCLMRKTLAAHADYIYTDKQR 85
            IGEE+CLMRKTLAAHADYIYTD QR
Sbjct: 61 EEIGEEYCLMRKTLAAHADYIYTDSQR 87

[Close]

BLAST of CmoCh04G004660 vs. NCBI nr
Match: KAG7014931.1 (Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.2 bits (287), Expect = 2.8e-22
Identity = 62/87 (71.26%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1  MASKLVTSIFTFLFLFFFLFSSTTSVFAR--PIPGSTNMSPGTTRDGFKVVDDVLEEESC 60
          MASKL+TSIFTFLFLFF   SS T++ A+  P+PG +N  PGT+RDG K  DD LEEESC
Sbjct: 1  MASKLLTSIFTFLFLFFSFVSSATTIGAQPVPVPGFSNAFPGTSRDGLKAGDDALEEESC 60

Query: 61 -GIGEEHCLMRKTLAAHADYIYTDKQR 85
            IGEE+CLMRKTLAAHADYIYTD QR
Sbjct: 61 EEIGEEYCLMRKTLAAHADYIYTDSQR 87

[Close]

BLAST of CmoCh04G004660 vs. NCBI nr
Match: XP_022149343.1 (phytosulfokines-like [Momordica charantia])

HSP 1 Score: 114.0 bits (284), Expect = 6.3e-22
Identity = 62/88 (70.45%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 1  MASKLVTSIFTFLFLFFFLFSST--TSVFARPIPGSTNMSPGTTRDGFKVVDDVLEEESC 60
          MASKL+T+ FTFL LFFF F S+   +V ARP+P   N  P TTR G KVVDDVLEEESC
Sbjct: 1  MASKLLTTFFTFLSLFFFFFFSSLAITVAARPVPDFPNAFPATTRHGLKVVDDVLEEESC 60

Query: 61 -GIGEEHCLMRKTLAAHADYIYTDKQRP 86
           GIGEE+CLMRKTLAAH DYIYTD Q P
Sbjct: 61 GGIGEEYCLMRKTLAAHLDYIYTDNQEP 88

[Close]

BLAST of CmoCh04G004660 vs. TAIR 10
Match: AT3G49780.1 (phytosulfokine 4 precursor )

HSP 1 Score: 54.7 bits (130), Expect = 4.3e-08
Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 10 FTFLFLFFFLFSSTTSVFARPIPGSTNMSPGTTRDGFKVVDDVLEEESC-GIGEEHCLMR 69
          FT +F+   L  ST +  AR  P +T  +        ++  D +EEESC GIGEE CL+R
Sbjct: 4  FTTIFIMALLLCSTLTYAARLTP-TTTTALSRENSVKEIEGDKVEEESCNGIGEEECLIR 63

Query: 70 KTLAAHADYIYTDKQRP 86
          ++L  H DYIYT   +P
Sbjct: 64 RSLVLHTDYIYTQNHKP 79

[Close]

BLAST of CmoCh04G004660 vs. TAIR 10
Match: AT2G22860.1 (phytosulfokine 2 precursor )

HSP 1 Score: 47.4 bits (111), Expect = 6.8e-06
Identity = 31/80 (38.75%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 13 LFLFFFLFSSTTSVFARPIPGSTNMSPGTTRDGFKV-------VDDV-LEEESCGIGEEH 72
          L     L  ST    ARP P + ++S  T  D   +       +DD+ + +E+CG  +E 
Sbjct: 7  LLTIALLLCSTLMCTARPEP-AISISITTAADPCNMEKKIEGKLDDMHMVDENCGADDED 66

Query: 73 CLMRKTLAAHADYIYTDKQR 85
          CLMR+TL AH DYIYT K++
Sbjct: 67 CLMRRTLVAHTDYIYTQKKK 85

The following BLAST results are available for this feature:

BLAST of CmoCh04G004660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FS10	1.6e-07	39.53	Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1	[more]
Q9M2Y0	6.0e-07	41.56	Phytosulfokines 3 OS=Arabidopsis thaliana OX=3702 GN=PSK3 PE=2 SV=2	[more]
O81003	9.6e-05	38.75	Phytosulfokines 2 OS=Arabidopsis thaliana OX=3702 GN=PSK2 PE=2 SV=1	[more]

BLAST of CmoCh04G004660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FNZ6	3.6e-39	100.00	Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111447189 PE=3 SV=1	[more]
A0A6J1E4U5	4.7e-23	72.41	Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111430788 PE=3 SV=1	[more]
A0A6J1D6J2	3.1e-22	70.45	Phytosulfokine-beta OS=Momordica charantia OX=3673 GN=LOC111017778 PE=3 SV=1	[more]
A0A0A0KY18	6.8e-22	71.26	Phytosulfokine-beta OS=Cucumis sativus OX=3659 GN=Csa_4G000620 PE=3 SV=1	[more]
A0A6J1JBS4	1.5e-21	70.11	Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111483027 PE=3 SV=1	[more]

BLAST of CmoCh04G004660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941982.1	7.5e-39	100.00	phytosulfokines-like [Cucurbita moschata]	[more]
KAG6600274.1	9.1e-37	96.47	Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022922962.1	9.8e-23	72.41	phytosulfokines-like [Cucurbita moschata] >KAG6576906.1 Phytosulfokines 3, parti...	[more]
KAG7014931.1	2.8e-22	71.26	Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022149343.1	6.3e-22	70.45	phytosulfokines-like [Momordica charantia]	[more]

BLAST of CmoCh04G004660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49780.1	4.3e-08	41.56	phytosulfokine 4 precursor	[more]
AT2G22860.1	6.8e-06	38.75	phytosulfokine 2 precursor	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009438	Phytosulfokine	PFAM	PF06404	PSK	coord: 53..84 e-value: 7.7E-10 score: 39.7
IPR009438	Phytosulfokine	PANTHER	PTHR33285	PHYTOSULFOKINES 3	coord: 1..85
None	No IPR available	PANTHER	PTHR33285:SF1	PHYTOSULFOKINES 3	coord: 1..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G004660.1	CmoCh04G004660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0008283	cell population proliferation
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016020	membrane
molecular_function	GO:0008083	growth factor activity