CmoCh04G002830 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G002830
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionzinc finger CCCH domain-containing protein 53-like isoform X2
LocationCmo_Chr04: 1425357 .. 1426670 (-)
RNA-Seq ExpressionCmoCh04G002830
SyntenyCmoCh04G002830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCTACGCCACCGCCCGTTACGATCGTATCTTCAACCGATATGCCTCGGCAGCTATCGCCACCGGCAAACGAATTCTCTGTCCATGACAAGGAGACATCCCAAAATGATGACATTGATTTACTTGAATGGTAATAACAATAAACCATTTACATTACTCCAATTTAGACATCCCAATTCATTACTCAGATTATGTGTTATAAAACGACCATTACAGTTTCGAACACAACCTCCCGGATAGTCCCTTTGCATCACCAGCAAAAGCCACCGGCGACCATGCAGCAAACGACTCCGACGACGCCGACGCCAACCCCGAGTCGAATCTCACATCAACTTCCTCTCTGGAAGTAGCAGCATCCTTCAAATCCTACAATTGCCAAATGCCAAGGTCAGCACTAAACCAACCAACCAACCAAACAACCAAACAATCAACACCTTAGAGTACTCTCACAATCCATTAAACTAAACAACAATCACTCTACAGGTTCCCATCGAGCCACGGGTCGATCGGAATGTACGTAGGGACAGGCGGGCCGACATGTCCGGTGGGGATTTAGCATCAAAAGCAGCAGCCACAGCAGGTAAAAAAGAAAACCCACAAAACCAAATGAATACTTCAACGATTACTCCATTGAAAAACAGAAAAAGAAAGGAAATTGCTTGGTTTTAACGATCATGTCTGGTGAATTCCAGGAAACAAAAAAAGAAAAAGAAAAAAAAGGAAAAATAAAGAGATTAACCAAAACAGCAGAGGAGTACACAGTATGAACACAGTATCTATAGAGAATGAGGGGAAGCAGAGGCAGGTCCTCCACAAGGGCACACCATCATATGAAGAGTACAAAAGAAAAGCAGTAAAAGAGGGAAGGTGGGGGCAGACCCATATGCATTTCTTCCATGTTTACTGTTCTTGATGGTAGCAGAGCAGTAGAATTCCATCATCTTCTTCTTCTCTCTTCCTTTTTAGTGTTATAAATTTGAATTTTATAGGTTAAAAGTAAGAAGAAAAAGAACACACAGAAAGAAAGAAAGCATGTTTTTATTTTTTTTTTTAAGGGTTTTTTCACAGAGTACTTCAAAATGGCAGAGGTTGAAGAAGAAGATGATGATGATGGTGGAGAGACTGTAATATTCCATTTTTAATTTCATTTTCTCTCATACTTTTCTCTCTTCCTTATGCCGTTTAGCAGAATTTAAGGATATTAAATTTAATAATATTTTAAAAACAAAATTGAAACAGACTCCGGTTCGGTTCGGTTTGAGAGGAGAGTGGGACAAAGAAGATTGAAATAGGGGTTTAGGGTCACATGGG

mRNA sequence

ATGGCCCTACGCCACCGCCCGTTACGATCGTATCTTCAACCGATATGCCTCGGCAGCTATCGCCACCGGCAAACGAATTCTCTTTTCGAACACAACCTCCCGGATAGTCCCTTTGCATCACCAGCAAAAGCCACCGGCGACCATGCAGCAAACGACTCCGACGACGCCGACGCCAACCCCGAGTCGAATCTCACATCAACTTCCTCTCTGGAAGTAGCAGCATCCTTCAAATCCTACAATTGCCAAATGCCAAGGTCAGCACTAAACCAACCAACCAACCAAACAACCAAACAATCAACACCTTAGAGTACTCTCACAATCCATTAAACTAAACAACAATCACTCTACAGGTTCCCATCGAGCCACGGGTCGATCGGAATGTACGTAGGGACAGGCGGGCCGACATGTCCGGTGGGGATTTAGCATCAAAAGCAGCAGCCACAGCAGGAAACAAAAAAAGAAAAAGAAAAAAAAGGAAAAATAAAGAGATTAACCAAAACAGCAGAGGAGTACACAGTATGAACACAGTATCTATAGAGAATGAGGGGAAGCAGAGGCAGGTCCTCCACAAGGGCACACCATCATATGAAGAGTACAAAAGAAAAGCAGTAAAAGAGGGAAGGTGGGGGCAGACCCATATGCATTTCTTCCATGTTTACTGTTCTTGATGGTAGCAGAGCAGTAGAATTCCATCATCTTCTTCTTCTCTCTTCCTTTTTAGTGTTATAAATTTGAATTTTATAGGTTAAAAGTAAGAAGAAAAAGAACACACAGAAAGAAAGAAAGCATGTTTTTATTTTTTTTTTTAAGGGTTTTTTCACAGAGTACTTCAAAATGGCAGAGGTTGAAGAAGAAGATGATGATGATGGTGGAGAGACTGTAATATTCCATTTTTAATTTCATTTTCTCTCATACTTTTCTCTCTTCCTTATGCCGTTTAGCAGAATTTAAGGATATTAAATTTAATAATATTTTAAAAACAAAATTGAAACAGACTCCGGTTCGGTTCGGTTTGAGAGGAGAGTGGGACAAAGAAGATTGAAATAGGGGTTTAGGGTCACATGGG

Coding sequence (CDS)

ATGGCCCTACGCCACCGCCCGTTACGATCGTATCTTCAACCGATATGCCTCGGCAGCTATCGCCACCGGCAAACGAATTCTCTTTTCGAACACAACCTCCCGGATAGTCCCTTTGCATCACCAGCAAAAGCCACCGGCGACCATGCAGCAAACGACTCCGACGACGCCGACGCCAACCCCGAGTCGAATCTCACATCAACTTCCTCTCTGGAAGTAGCAGCATCCTTCAAATCCTACAATTGCCAAATGCCAAGGTCAGCACTAAACCAACCAACCAACCAAACAACCAAACAATCAACACCTTAG

Protein sequence

MALRHRPLRSYLQPICLGSYRHRQTNSLFEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPRSALNQPTNQTTKQSTP
Homology
[Close]
BLAST of CmoCh04G002830 vs. ExPASy TrEMBL
Match: A0A6J1JMD8 (zinc finger CCCH domain-containing protein 53-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485698 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.2e-22
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 29  FEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR 86
           FEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR
Sbjct: 617 FEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR 673

[Close]
BLAST of CmoCh04G002830 vs. ExPASy TrEMBL
Match: A0A6J1JLN7 (zinc finger CCCH domain-containing protein 53-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485698 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.2e-22
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 29  FEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR 86
           FEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR
Sbjct: 615 FEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR 671

[Close]
BLAST of CmoCh04G002830 vs. ExPASy TrEMBL
Match: A0A6J1FSM5 (zinc finger CCCH domain-containing protein 53-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446931 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.2e-22
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 29  FEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR 86
           FEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR
Sbjct: 617 FEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR 673

[Close]
BLAST of CmoCh04G002830 vs. ExPASy TrEMBL
Match: A0A6J1FNZ7 (zinc finger CCCH domain-containing protein 53-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446931 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.2e-22
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 29  FEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR 86
           FEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR
Sbjct: 615 FEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR 671

[Close]
BLAST of CmoCh04G002830 vs. ExPASy TrEMBL
Match: A0A1S4DWA4 (zinc finger CCCH domain-containing protein 53 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488758 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.8e-12
Identity = 46/66 (69.70%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 29  FEHNLPDSPFASPAKATGDHAANDSD---------DADANPESNLTSTSSLEVAASFKSY 86
           FEHNLPDSPFASPAKATGD+A N SD         D+D    S LTSTSSLEVA SFKSY
Sbjct: 643 FEHNLPDSPFASPAKATGDYATNFSDIAAVGEAANDSDDASSSILTSTSSLEVATSFKSY 702

[Close]
BLAST of CmoCh04G002830 vs. NCBI nr
Match: XP_022941628.1 (zinc finger CCCH domain-containing protein 53-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 29  FEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR 86
           FEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR
Sbjct: 617 FEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR 673

[Close]
BLAST of CmoCh04G002830 vs. NCBI nr
Match: XP_022988464.1 (zinc finger CCCH domain-containing protein 53-like isoform X1 [Cucurbita maxima] >XP_022988473.1 zinc finger CCCH domain-containing protein 53-like isoform X1 [Cucurbita maxima] >XP_022988482.1 zinc finger CCCH domain-containing protein 53-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 29  FEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR 86
           FEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR
Sbjct: 617 FEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR 673

[Close]
BLAST of CmoCh04G002830 vs. NCBI nr
Match: XP_022988489.1 (zinc finger CCCH domain-containing protein 53-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 29  FEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR 86
           FEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR
Sbjct: 615 FEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR 671

[Close]
BLAST of CmoCh04G002830 vs. NCBI nr
Match: XP_022941629.1 (zinc finger CCCH domain-containing protein 53-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 29  FEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR 86
           FEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR
Sbjct: 615 FEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR 671

[Close]
BLAST of CmoCh04G002830 vs. NCBI nr
Match: KAG6600112.1 (Zinc finger CCCH domain-containing protein 53, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111.7 bits (278), Expect = 3.7e-21
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 29  FEHNLPDSPFASPAKATGDHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR 86
           FEHNLPDSPFASPAKATG+HAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR
Sbjct: 617 FEHNLPDSPFASPAKATGEHAANDSDDADANPESNLTSTSSLEVAASFKSYNCQMPR 673

The following BLAST results are available for this feature:
BLAST of CmoCh04G002830 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G002830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JMD86.2e-22100.00zinc finger CCCH domain-containing protein 53-like isoform X1 OS=Cucurbita maxim... [more]
A0A6J1JLN76.2e-22100.00zinc finger CCCH domain-containing protein 53-like isoform X2 OS=Cucurbita maxim... [more]
A0A6J1FSM56.2e-22100.00zinc finger CCCH domain-containing protein 53-like isoform X1 OS=Cucurbita mosch... [more]
A0A6J1FNZ76.2e-22100.00zinc finger CCCH domain-containing protein 53-like isoform X2 OS=Cucurbita mosch... [more]
A0A1S4DWA45.8e-1269.70zinc finger CCCH domain-containing protein 53 isoform X1 OS=Cucumis melo OX=3656... [more]
BLAST of CmoCh04G002830 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022941628.11.3e-21100.00zinc finger CCCH domain-containing protein 53-like isoform X1 [Cucurbita moschat... [more]
XP_022988464.11.3e-21100.00zinc finger CCCH domain-containing protein 53-like isoform X1 [Cucurbita maxima]... [more]
XP_022988489.11.3e-21100.00zinc finger CCCH domain-containing protein 53-like isoform X2 [Cucurbita maxima][more]
XP_022941629.11.3e-21100.00zinc finger CCCH domain-containing protein 53-like isoform X2 [Cucurbita moschat... [more]
KAG6600112.13.7e-2198.25Zinc finger CCCH domain-containing protein 53, partial [Cucurbita argyrosperma s... [more]
BLAST of CmoCh04G002830 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G002830.1CmoCh04G002830.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003723 RNA binding