CmoCh03G014470 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G014470
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr03: 10472310 .. 10472776 (-)
RNA-Seq Expression	CmoCh03G014470
Synteny	CmoCh03G014470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAATTCCGATCAAACCAGTAGCGGCGATGGTCGTGTTCTTGCCACTCATCGTGGCGGTCGCATCCGCGCTGGAGATACGGCCGTCGGAGCACGGGCTGGAGTTTCAGAGCCCTCCGCCTGCGGGAGAAAAATCGTCGCCAGAGATGCGGTCGTTCTTCGTAGGAACATCGTCGCCAATTCCGGATACAACATTGCCGTTGCCGAAGGCGATGAATTCGAGCGAGGCGCCGGGATGGTGGACCCACCGTGACGGTGGAAATAAACGAGTAAGAAATGCATTATTGGTGGCGACGGCGGCTTGTGGAATTACAGGTGTCACTTTATTAGTGGGTTCTACGCTATTCTACATTTATAAGGTAAAAAATCAAACACCATTGCCATTATCTTCAAATAATAATCACAAATAAACATATCAACAACAATCATGATCCCTTACTTTGTTCATCTCTTGAAGTAGCGATAA

mRNA sequence

ATGATAATTCCGATCAAACCAGTAGCGGCGATGGTCGTGTTCTTGCCACTCATCGTGGCGGTCGCATCCGCGCTGGAGATACGGCCGTCGGAGCACGGGCTGGAGTTTCAGAGCCCTCCGCCTGCGGGAGAAAAATCGTCGCCAGAGATGCGGTCGTTCTTCGTAGGAACATCGTCGCCAATTCCGGATACAACATTGCCGTTGCCGAAGGCGATGAATTCGAGCGAGGCGCCGGGATGGTGGACCCACCGTGACGGTGGAAATAAACGAGTAAGAAATGCATTATTGGTGGCGACGGCGGCTTGTGGAATTACAGGTGTCACTTTATTAGTGGGTTCTACGCTATTCTACATTTATAAGCGATAA

Coding sequence (CDS)

ATGATAATTCCGATCAAACCAGTAGCGGCGATGGTCGTGTTCTTGCCACTCATCGTGGCGGTCGCATCCGCGCTGGAGATACGGCCGTCGGAGCACGGGCTGGAGTTTCAGAGCCCTCCGCCTGCGGGAGAAAAATCGTCGCCAGAGATGCGGTCGTTCTTCGTAGGAACATCGTCGCCAATTCCGGATACAACATTGCCGTTGCCGAAGGCGATGAATTCGAGCGAGGCGCCGGGATGGTGGACCCACCGTGACGGTGGAAATAAACGAGTAAGAAATGCATTATTGGTGGCGACGGCGGCTTGTGGAATTACAGGTGTCACTTTATTAGTGGGTTCTACGCTATTCTACATTTATAAGCGATAA

Protein sequence

MIIPIKPVAAMVVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSPIPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYKR

Homology

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BLAST of CmoCh03G014470 vs. ExPASy TrEMBL
Match: A0A6J1EFW4 (uncharacterized protein LOC111433017 OS=Cucurbita moschata OX=3662 GN=LOC111433017 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 2.9e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MIIPIKPVAAMVVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSP 60
           MIIPIKPVAAMVVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSP
Sbjct: 57  MIIPIKPVAAMVVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSP 116

Query: 61  IPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 120
           IPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK
Sbjct: 117 IPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 176

[Close]

BLAST of CmoCh03G014470 vs. ExPASy TrEMBL
Match: A0A6J1KMY3 (uncharacterized protein LOC111497130 OS=Cucurbita maxima OX=3661 GN=LOC111497130 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.2e-45
Identity = 96/119 (80.67%), Postives = 108/119 (90.76%), Query Frame = 0


Query: 2   IIPIKPVAAMVVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSPI 61
           +I IK +AAM V+L  IVA+ +ALEIRPSEHGLEFQSPP AG+KSSPEMRSFF GTSSP 
Sbjct: 1   MITIKSMAAMAVYLLFIVAIEAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT 60

Query: 62  PDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 121
           P+  LPLPKAMNSSEAPGWWTHRDGG+KR+RNALLVATAACG+TGVTLLVGSTL+YI+K
Sbjct: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGMTGVTLLVGSTLYYIFK 119

[Close]

BLAST of CmoCh03G014470 vs. ExPASy TrEMBL
Match: A0A6J1EFQ9 (uncharacterized protein LOC111433768 OS=Cucurbita moschata OX=3662 GN=LOC111433768 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.7e-45
Identity = 97/119 (81.51%), Postives = 108/119 (90.76%), Query Frame = 0


Query: 2   IIPIKPVAAMVVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSPI 61
           +I IK +AAM V+L  IVA+A+ALEIRPSEHGLEFQS P AG+KSSPEMRSFF GTSSP 
Sbjct: 1   MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSLPAAGDKSSPEMRSFFGGTSSPT 60

Query: 62  PDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 121
           P+  LPLPKAMNSSEAPGWWTHRDGG+KR+RNALLVATAACGITGVTLLVGSTL+YI+K
Sbjct: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFK 119

[Close]

BLAST of CmoCh03G014470 vs. ExPASy TrEMBL
Match: A0A6J1CZN3 (uncharacterized protein LOC111015729 OS=Momordica charantia OX=3673 GN=LOC111015729 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.9e-43
Identity = 98/123 (79.67%), Postives = 104/123 (84.55%), Query Frame = 0


Query: 2   IIPIKPVAAMVVFLPLIVAV----ASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGT 61
           +IPIK  AAM V LPLIVAV     +ALEIRPSEHGLEFQSPPPAG+KSSPEM SFF G 
Sbjct: 1   MIPIKIAAAMAVCLPLIVAVLAVKTTALEIRPSEHGLEFQSPPPAGDKSSPEMLSFFGGR 60

Query: 62  SSPIPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFY 121
           SSP PD  LPLPKAMNSSEAPGWWT RDGG+ R+RNALLVATAA GITGVTLLVGS LFY
Sbjct: 61  SSPTPDAALPLPKAMNSSEAPGWWTRRDGGDTRLRNALLVATAAFGITGVTLLVGSVLFY 120

[Close]

BLAST of CmoCh03G014470 vs. ExPASy TrEMBL
Match: A0A0A0KM65 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525480 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 7.7e-43
Identity = 89/119 (74.79%), Postives = 102/119 (85.71%), Query Frame = 0


Query: 2   IIPIKPVAAMVVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSPI 61
           +IPIK  AA+V F  LI ++A+  EIRPSEHGLEFQSPPP G+KSSPEMRSFF G +SP 
Sbjct: 1   MIPIKSSAAIVAFFSLIASIAAVSEIRPSEHGLEFQSPPPVGDKSSPEMRSFFGGIASPT 60

Query: 62  PDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 121
           P+  LP+PK +NSSE+PGWW H DGGNKR+RNALLVATAACGITGVTLLVGSTLFYI+K
Sbjct: 61  PEVALPIPKTLNSSESPGWWNHHDGGNKRLRNALLVATAACGITGVTLLVGSTLFYIFK 119

[Close]

BLAST of CmoCh03G014470 vs. NCBI nr
Match: XP_022925668.1 (uncharacterized protein LOC111433017 [Cucurbita moschata])

HSP 1 Score: 234.2 bits (596), Expect = 6.0e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MIIPIKPVAAMVVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSP 60
           MIIPIKPVAAMVVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSP
Sbjct: 57  MIIPIKPVAAMVVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSP 116

Query: 61  IPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 120
           IPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK
Sbjct: 117 IPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 176

[Close]

BLAST of CmoCh03G014470 vs. NCBI nr
Match: KAG6581475.1 (hypothetical protein SDJN03_21477, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034767.1 hypothetical protein SDJN02_04498, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 232.6 bits (592), Expect = 1.7e-57
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MIIPIKPVAAMVVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSP 60
           MIIPIKPVAAM VFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSP
Sbjct: 1   MIIPIKPVAAMAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSP 60

Query: 61  IPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 120
           IPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK
Sbjct: 61  IPDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 120

[Close]

BLAST of CmoCh03G014470 vs. NCBI nr
Match: XP_023543933.1 (uncharacterized protein LOC111803654 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 216.1 bits (549), Expect = 1.7e-52
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 11  MVVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSPIPDTTLPLPK 70
           M VFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSP+MRSFFVGTSSPIPDTTLPLPK
Sbjct: 1   MAVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPQMRSFFVGTSSPIPDTTLPLPK 60

Query: 71  AMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 121
           AMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK
Sbjct: 61  AMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 110

[Close]

BLAST of CmoCh03G014470 vs. NCBI nr
Match: XP_023518243.1 (uncharacterized protein LOC111781779 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.5 bits (493), Expect = 5.3e-46
Identity = 98/119 (82.35%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 2   IIPIKPVAAMVVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSPI 61
           +I IK +AAM V+L  IVA+A+ALEIRPSEHGLEFQSPP AG+KSSPEMRSFF GTSSP 
Sbjct: 1   MITIKSMAAMAVYLLFIVAIAAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT 60

Query: 62  PDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 121
           P+  LPLPKAMNSSEAPGWWTHRDGG+KR+RNALLVATAACGITGVTLLVGSTL+YI+K
Sbjct: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGITGVTLLVGSTLYYIFK 119

[Close]

BLAST of CmoCh03G014470 vs. NCBI nr
Match: XP_023003567.1 (uncharacterized protein LOC111497130 [Cucurbita maxima])

HSP 1 Score: 191.4 bits (485), Expect = 4.4e-45
Identity = 96/119 (80.67%), Postives = 108/119 (90.76%), Query Frame = 0


Query: 2   IIPIKPVAAMVVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSPI 61
           +I IK +AAM V+L  IVA+ +ALEIRPSEHGLEFQSPP AG+KSSPEMRSFF GTSSP 
Sbjct: 1   MITIKSMAAMAVYLLFIVAIEAALEIRPSEHGLEFQSPPAAGDKSSPEMRSFFGGTSSPT 60

Query: 62  PDTTLPLPKAMNSSEAPGWWTHRDGGNKRVRNALLVATAACGITGVTLLVGSTLFYIYK 121
           P+  LPLPKAMNSSEAPGWWTHRDGG+KR+RNALLVATAACG+TGVTLLVGSTL+YI+K
Sbjct: 61  PEVALPLPKAMNSSEAPGWWTHRDGGDKRLRNALLVATAACGMTGVTLLVGSTLYYIFK 119

[Close]

BLAST of CmoCh03G014470 vs. TAIR 10
Match: AT4G21740.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30515.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-11
Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 0


Query: 12  VVFLPLIVAVASALEIRPSEHGLEFQSPPPAGEKSSP--EMRSFF--VGTSSPIPDTTLP 71
           + FL +    + A E+RPS+HGL++Q   P  E  SP  +M+SFF    +SSP P     
Sbjct: 20  ITFLVIFTGNSLAGELRPSDHGLQYQFSSPPTESHSPPGKMKSFFGDSHSSSPPPSHPQL 79

Query: 72  LPK--AMNSSEAPGWWTHRDGGNKR----VRNALLVATAACGITGVTLLVGSTLFYIYK 121
           LPK  A +  +   WW  RDG   R    +R+  L A+  CG++GV LLV  TL Y ++
Sbjct: 80  LPKATAADGGDDDSWW--RDGAGIRRDHVMRHVFLAASIICGVSGVALLVVFTLIYFFR 136

[Close]

BLAST of CmoCh03G014470 vs. TAIR 10
Match: AT1G30515.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21740.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 1.9e-06
Identity = 40/117 (34.19%), Postives = 66/117 (56.41%), Query Frame = 0


Query: 7   PVAAMVVFLPLIV--AVASALEIRPSEHGLEFQSPPPAGEKSSPEMRSFFVGTSSPIPDT 66
           P+ +M++   +++   + +A E+RPS+HGLE+   P  GE S  EM SFF G  S    T
Sbjct: 11  PLISMLIMFIIVLESTIINARELRPSDHGLEYYYEP--GESS--EMTSFF-GPPSSNDLT 70

Query: 67  TLPLPKAM---NSSEAPGWWTHRDGGNKRVRN-ALLVATAACGITGVTLLVGSTLFY 118
           ++  P +    ++ ++P     +D  + RV N  L+V +  CG++GV L+V S L Y
Sbjct: 71  SISSPSSSILPSAVKSPMKTLSKDQDDDRVMNHVLVVGSLVCGLSGVALMVASALIY 122

The following BLAST results are available for this feature:

BLAST of CmoCh03G014470 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh03G014470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EFW4	2.9e-58	100.00	uncharacterized protein LOC111433017 OS=Cucurbita moschata OX=3662 GN=LOC1114330...	[more]
A0A6J1KMY3	2.2e-45	80.67	uncharacterized protein LOC111497130 OS=Cucurbita maxima OX=3661 GN=LOC111497130...	[more]
A0A6J1EFQ9	3.7e-45	81.51	uncharacterized protein LOC111433768 OS=Cucurbita moschata OX=3662 GN=LOC1114337...	[more]
A0A6J1CZN3	5.9e-43	79.67	uncharacterized protein LOC111015729 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A0A0KM65	7.7e-43	74.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525480 PE=4 SV=1	[more]

BLAST of CmoCh03G014470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925668.1	6.0e-58	100.00	uncharacterized protein LOC111433017 [Cucurbita moschata]	[more]
KAG6581475.1	1.7e-57	99.17	hypothetical protein SDJN03_21477, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023543933.1	1.7e-52	98.18	uncharacterized protein LOC111803654 [Cucurbita pepo subsp. pepo]	[more]
XP_023518243.1	5.3e-46	82.35	uncharacterized protein LOC111781779 [Cucurbita pepo subsp. pepo]	[more]
XP_023003567.1	4.4e-45	80.67	uncharacterized protein LOC111497130 [Cucurbita maxima]	[more]

BLAST of CmoCh03G014470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21740.1	3.4e-11	38.66	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G30515.1	1.9e-06	34.19	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..68
None	No IPR available	PANTHER	PTHR37189:SF4	CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED	coord: 8..120
None	No IPR available	PANTHER	PTHR37189	CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED	coord: 8..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G014470.1	CmoCh03G014470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane