CmoCh03G005810 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGGTAATGTTTCATCTACAGGAGGATTGAATAATGGACTCAACTCCTCAAGCCTCTTTCCCTCACACACCGTTTCTTGTTTCGTTGGTTCATGCAAGATAATCCCCACCATGAACAAGCGATGGACGCTGAAATTCAATTCTTAAACTCTGCTAAGAATTTCTTTAGTTCAGGCAAGAAATTGAAGATGGGTAGTTGAACTTGCACCCGTGGGGCTCGCAAAAGCTGGAAAGAGACTGTTAATAACTGTAAATTAGGTGCGCAAATAACGGGTTCGCCGCTTGATCACACGAGTTAGTGGAAAATGTTGGAATCTGATCCAAGTACAACTGGTTGTTGGCACCTCACTTTTAGCTTTTCAAAACTCTCCTTTCTACCCTAAAGCTGGTGGTTCTGGAAAAAAGCCGAAAATGGAAGAGCCGACAGGCGGAACCAAACCGATCAAGTGCAGTGAGGACCAGAAACGTCAAAAATATGGAAGATATGCAGCAGGGTCCTCGTCCGACGAGCTTCTGATCGGGAATTCCGATGCTCCTCCACATTCAGAGACTGAAACTTCCCATATTTCCACAGGTGAAGATTCGGGAAGCTCCGGCGAGGAAACAGGGTTGTCCGGCCTGGCAGAGAGCCTGCAGATCTTAACGAAGTCGCTGCTGACAGCGGAAATGGAGATTTTCAGGGCGAGGGAGGCCATCCGCCTTGAGGAGGAAAAGAGGAGGTTGGAATCGGAGGCCGAGATGACTCGCATGCTGCTCCAGTGTCAGATGCAGATCGCCTCGTTTCTGTCGGCCAGGCAGGGTCCCAACAACCGGAAAAGAAAGAGGGTTCAGGAAGAAGAACCATCTCCCTCAGTCTCCTTAGAAAGGTAGAATAGAATCTTCAGCCTTCGTTAAGTAATCAGCAACAACTAATAACTGATATATGAATCTGATCTTGTTGATTGATGCAGGGACGGAGCTCTGCTGCTAAGTCTAATTCAACTCAACATGATCACCTTTTGAAGCTGCTATGCTAAGGTTTGAACGGGGAGCGTAAGAGTGCTTGTATTATGAGGGTATAAGTGTAACTGTATCGATCAACAAAGCGTGATATTGATCGAATTACTGAATATTTTTCCATTTCTATCTCAATCCTATAAGTTATGACTGATTCATTGGCATATTAAAAGCTCAACAAAAAAAGAAAAATCATGTCAAGCTTACTAGCTAGCTGAGTCGATTTAGATAATCAAGCGAATTGGGTTTTCTTCATGCCGATGTTGGAGTCCTTGATTTTATGGTCGTCAACAGTTTGCAAAGCCTTGCGCCTGCTCATAGCGCATTCGATATATTCTTGAAGGGGTGGAAGTATGCCATGTTCTCCAGTTTTGGATACTTTCCCTCGAAGTATCTGTATAAAGAAACCCAGAAAGAGAAGTTATAGCCACCACATAGGGACTCTACGCATTAATGATAGATGAAATAAAGGACGGGTAGTTTGCCTTTGATGCCCAGGACCGCTCG TGGTAATGTTTCATCTACAGGAGGATTGAATAATGGACTCAACTCCTCAAGCCTCTTTCCCTCACACACCGTTTCTTGTTTCGTTGGTTCATGCAAGATAATCCCCACCATGAACAAGCGATGGACGCTGAAATTCAATTCTTAAACTCTGCTAAGAATTTCTTTAGTTCAGGCAAGAAATTGAAGATGGGTAGTTGAACTTGCACCCGTGGGGCTCGCAAAAGCTGGAAAGAGACTGTTAATAACTGTAAATTAGGTGCGCAAATAACGGGTTCGCCGCTTGATCACACGAGTTAGTGGAAAATGTTGGAATCTGATCCAAGTACAACTGGTTGTTGGCACCTCACTTTTAGCTTTTCAAAACTCTCCTTTCTACCCTAAAGCTGGTGGTTCTGGAAAAAAGCCGAAAATGGAAGAGCCGACAGGCGGAACCAAACCGATCAAGTGCAGTGAGGACCAGAAACGTCAAAAATATGGAAGATATGCAGCAGGGTCCTCGTCCGACGAGCTTCTGATCGGGAATTCCGATGCTCCTCCACATTCAGAGACTGAAACTTCCCATATTTCCACAGGTGAAGATTCGGGAAGCTCCGGCGAGGAAACAGGGTTGTCCGGCCTGGCAGAGAGCCTGCAGATCTTAACGAAGTCGCTGCTGACAGCGGAAATGGAGATTTTCAGGGCGAGGGAGGCCATCCGCCTTGAGGAGGAAAAGAGGAGGTTGGAATCGGAGGCCGAGATGACTCGCATGCTGCTCCAGTGTCAGATGCAGATCGCCTCGTTTCTGTCGGCCAGGCAGGGTCCCAACAACCGGAAAAGAAAGAGGGTTCAGGAAGAAGAACCATCTCCCTCAGTCTCCTTAGAAAGGGACGGAGCTCTGCTGCTAAGTCTAATTCAACTCAACATGATCACCTTTTGAAGCTGCTATGCTAAGGTTTGAACGGGGAGCGTAAGAGTGCTTGTATTATGAGGGTATAAGTGTAACTGTATCGATCAACAAAGCGTGATATTGATCGAATTACTGAATATTTTTCCATTTCTATCTCAATCCTATAAGTTATGACTGATTCATTGGCATATTAAAAGCTCAACAAAAAAAGAAAAATCATGTCAAGCTTACTAGCTAGCTGAGTCGATTTAGATAATCAAGCGAATTGGGTTTTCTTCATGCCGATGTTGGAGTCCTTGATTTTATGGTCGTCAACAGTTTGCAAAGCCTTGCGCCTGCTCATAGCGCATTCGATATATTCTTGAAGGGGTGGAAGTATGCCATGTTCTCCAGTTTTGGATACTTTCCCTCGAAGTATCTGTATAAAGAAACCCAGAAAGAGAAGTTATAGCCACCACATAGGGACTCTACGCATTAATGATAGATGAAATAAAGGACGGGTAGTTTGCCTTTGATGCCCAGGACCGCTCG ATGGAAGAGCCGACAGGCGGAACCAAACCGATCAAGTGCAGTGAGGACCAGAAACGTCAAAAATATGGAAGATATGCAGCAGGGTCCTCGTCCGACGAGCTTCTGATCGGGAATTCCGATGCTCCTCCACATTCAGAGACTGAAACTTCCCATATTTCCACAGGTGAAGATTCGGGAAGCTCCGGCGAGGAAACAGGGTTGTCCGGCCTGGCAGAGAGCCTGCAGATCTTAACGAAGTCGCTGCTGACAGCGGAAATGGAGATTTTCAGGGCGAGGGAGGCCATCCGCCTTGAGGAGGAAAAGAGGAGGTTGGAATCGGAGGCCGAGATGACTCGCATGCTGCTCCAGTGTCAGATGCAGATCGCCTCGTTTCTGTCGGCCAGGCAGGGTCCCAACAACCGGAAAAGAAAGAGGGTTCAGGAAGAAGAACCATCTCCCTCAGTCTCCTTAGAAAGGGACGGAGCTCTGCTGCTAAGTCTAATTCAACTCAACATGATCACCTTTTGA MEEPTGGTKPIKCSEDQKRQKYGRYAAGSSSDELLIGNSDAPPHSETETSHISTGEDSGSSGEETGLSGLAESLQILTKSLLTAEMEIFRAREAIRLEEEKRRLESEAEMTRMLLQCQMQIASFLSARQGPNNRKRKRVQEEEPSPSVSLERDGALLLSLIQLNMITF Homology
BLAST of CmoCh03G005810 vs. ExPASy Swiss-Prot
Match: Q8L8L9 (Uncharacterized protein At4g22160 OS=Arabidopsis thaliana OX=3702 GN=At4g22160 PE=2 SV=2) HSP 1 Score: 74.3 bits (181), Expect = 1.4e-12 Identity = 62/154 (40.26%), Postives = 90/154 (58.44%), Query Frame = 0
BLAST of CmoCh03G005810 vs. ExPASy TrEMBL
Match: A0A6J1GEE5 (uncharacterized protein At4g22160 OS=Cucurbita moschata OX=3662 GN=LOC111453191 PE=4 SV=1) HSP 1 Score: 311.2 bits (796), Expect = 2.6e-81 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0
BLAST of CmoCh03G005810 vs. ExPASy TrEMBL
Match: A0A6J1IKP0 (uncharacterized protein LOC111477923 OS=Cucurbita maxima OX=3661 GN=LOC111477923 PE=4 SV=1) HSP 1 Score: 303.1 bits (775), Expect = 7.1e-79 Identity = 164/168 (97.62%), Postives = 165/168 (98.21%), Query Frame = 0
BLAST of CmoCh03G005810 vs. ExPASy TrEMBL
Match: A0A0A0KHR9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G512930 PE=4 SV=1) HSP 1 Score: 245.0 bits (624), Expect = 2.3e-61 Identity = 137/168 (81.55%), Postives = 148/168 (88.10%), Query Frame = 0
BLAST of CmoCh03G005810 vs. ExPASy TrEMBL
Match: A0A5D3CRX4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006190 PE=4 SV=1) HSP 1 Score: 242.3 bits (617), Expect = 1.5e-60 Identity = 135/168 (80.36%), Postives = 145/168 (86.31%), Query Frame = 0
BLAST of CmoCh03G005810 vs. ExPASy TrEMBL
Match: A0A1S3AZS4 (uncharacterized protein LOC103484640 OS=Cucumis melo OX=3656 GN=LOC103484640 PE=4 SV=1) HSP 1 Score: 235.0 bits (598), Expect = 2.4e-58 Identity = 132/168 (78.57%), Postives = 142/168 (84.52%), Query Frame = 0
BLAST of CmoCh03G005810 vs. NCBI nr
Match: XP_022949954.1 (uncharacterized protein At4g22160 [Cucurbita moschata]) HSP 1 Score: 311.2 bits (796), Expect = 5.3e-81 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0
BLAST of CmoCh03G005810 vs. NCBI nr
Match: XP_023544081.1 (uncharacterized protein LOC111803775 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 303.5 bits (776), Expect = 1.1e-78 Identity = 164/168 (97.62%), Postives = 165/168 (98.21%), Query Frame = 0
BLAST of CmoCh03G005810 vs. NCBI nr
Match: XP_022977691.1 (uncharacterized protein LOC111477923 [Cucurbita maxima]) HSP 1 Score: 303.1 bits (775), Expect = 1.5e-78 Identity = 164/168 (97.62%), Postives = 165/168 (98.21%), Query Frame = 0
BLAST of CmoCh03G005810 vs. NCBI nr
Match: KAG6603799.1 (hypothetical protein SDJN03_04408, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 302.0 bits (772), Expect = 3.2e-78 Identity = 165/168 (98.21%), Postives = 165/168 (98.21%), Query Frame = 0
BLAST of CmoCh03G005810 vs. NCBI nr
Match: XP_038882486.1 (uncharacterized protein LOC120073739 [Benincasa hispida]) HSP 1 Score: 258.1 bits (658), Expect = 5.4e-65 Identity = 142/168 (84.52%), Postives = 151/168 (89.88%), Query Frame = 0
BLAST of CmoCh03G005810 vs. TAIR 10
Match: AT4G22160.2 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 74.3 bits (181), Expect = 1.0e-13 Identity = 62/154 (40.26%), Postives = 90/154 (58.44%), Query Frame = 0
BLAST of CmoCh03G005810 vs. TAIR 10
Match: AT4G22160.1 (unknown protein; Has 42 Blast hits to 42 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 69.3 bits (168), Expect = 3.3e-12 Identity = 55/133 (41.35%), Postives = 81/133 (60.90%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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