CmoCh03G001340 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh03G001340
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description60S ribosomal protein L35a-1-like
LocationCmo_Chr03: 1820136 .. 1822499 (-)
RNA-Seq ExpressionCmoCh03G001340
SyntenyCmoCh03G001340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAAATGATTTTGACCCTCAAATCCCCGTTATAAAAAGTTCCGTCTTCTTCAAGTGGTCACCTTCTTCTCTGAACCGCTGCTCCATCTTCCTCTCTTCAACCTGCAAATCTAAGGTGATTATTCCTCAAAGATTTCCATTTTTTTTCTTACCAATAGCATTTACATTTGGTTACCGATCTTAGTTCTTCGCGAGTCTTGAACGAGTCATTTTACAGAATCCTAACCTGCGGCAGCCATGGTGAAGGGAAGTCAGGGAGAAAGAATCAGGTCTCTCTCCGAACCCTAGATCAACCCGATTTGATTACTTGAATTTCTTTGTTTTTTTTACCGCTTTGCTAATGTATTGTGTTTGTTTCAGACTCTACGTCAGAGGAACAGTCCTTGGGTACAAAAGGTAATTGGTTTCGCTTCGATTATCGATTATTGGACTGTTTTTTTTTTTCGTGATGAGTACTTTTTAAGTGTAGTTTGATGCCAGAAAATTGATGAAACTGGATTTGAAATATGCGTTAGGTTTAGTGATTAGTTAGTGAGGGATGCTATTGTTTGTGTGGGAGCTAAGAACTTGGAATTGGTATTTAGGTCCAAGTCAAACCAGTATCCAAGAACATCACTGATTCAGATTGAAGGTGTGAATACCAAGGAAGAGGTTGCATGGTATGCTGGAAAACGGTTGGCATATATTTACAAGGCCAAAGTGAAGCAAAATGGAACTCACTATCGGTGCATTTGGGGCAAGGTATCCAGACCTCATGGTAACAGTGGCATTGTTCGAGCTAAGTTTAAGTCAAACTTGCCCCCAAAATCCATGGTAATGTGGAATGAGTAGCTGTTTCTTCATATTTGTTCAATGATGGTATATTGGGATAGGTTTTCTGATTGAATTTCTGGACAATTTTGCAGGGTGATAAAATTAGGGTATTTATGTACCCCAGCAACATATGAGGTACACTCCCCTCCACCACTCTTTTTGATGTAGAAAGGGAAAAACCATCCATGCTGTTTATCTTAATGTGATAAAACAACAGTATGCTTGATATTGCATTCCAATATTCAATTTTTGTTTGCTTTACTTAATGGGATTTGTGATGTAGTCCTGTGATCATTGTATCATTTGTGATATGTTTTTCTCAATATTTGTTTTTGTTTGTCTGTTCTTGGGTGTTGTTATATCTTATGTGTGTTTATTTCAGAATATTCATGGATTCTTTTGTCTCTTCAATCTCTAATTTGGAGCATGATGGCAATCAGATGTTCTTGAGATGTCTTTATGTATTCTTCCAATAGTGCAGTGCGTTTTATAGGGCTGCAATACTGTGCTGTTTCGTGTTCCGAAGATTCGATTTATGTTTTCTAAAATTCTAATCTGTTACACAGATTTTTTATTTTACCTTAATATCTTTGGCTCTAGCTTTATGTCTTGTCCTCACGATGGAATTTTTAGTTTTACTTTTGGACCAATTTCATATAATTCTTTTTTCTAAGTTCATTTCTTGACAATTCACATAATCCAGTCCATACCTGTTATAGATTGGATATCTTTCTCTTGTCTGGTTATACTTTTCTAGCCCTGGTTCTAGCAACCTCTGCGTCCTGTAGTACTCCGTTGTATTTCATATGAACTGATGGAAGCCAGATTGGATTCGTAGTTGACTTGGATCTATCTATATTTTCCTTTTATTGTTTTGTTTTTACAACACAGTTCATGTTTAGTTGATAAGTTCAGGGTAAACTTCATTTCTCGATTATCGACAAACGAAAATCATTCTGCCATGTCGTTTTCTTAAAATGGATTTTTCAACGTCGTGAATCAAGACACCACAAATTGTTATTATTTGACCAGTGTTCATCCATGAATGGGGTTTCATTTCCTATACCGATTCTGTCGTAGAACCTTCGTGTGTCGTGATTGTGAATCTAATTAATATCCGTATCTGTAGGAGTGTTTGTCTAAACTTATAAAACCAGACGCCTTCACTTCTAAATGTTTTACTGCTTAGTTTATGTAGCGTTGTTTCTGATCTCTTTTTTATTTTTTTGCAGTTCCTCAAATCAGCTAGCTAGAGGGGTAAGGTTTCGTTTCTTTCTCGACTTGATGGATCGATAGTTTTCTTTTACTTTACTGGACGCAATGTTTAGATGATGATGTTTTGATGTGAAACTTGACTAAATTTGGAAGGATCATTATGGAATCATACTTTGAATTTTGACCTAGTTTAATTTAGTGTGAAGGCATCTCTGCAAGACTTCACTTGCATTTAGATATCTGTTCTTGATACTATTGTGAGTTTAAGAAGCTTGATGGCAATAGCATGGCTTCGCATTAAATCCTAACATTTTGTGGGTCGGCGACGATATGGTAT

mRNA sequence

TTAAATGATTTTGACCCTCAAATCCCCGTTATAAAAAGTTCCGTCTTCTTCAAGTGGTCACCTTCTTCTCTGAACCGCTGCTCCATCTTCCTCTCTTCAACCTGCAAATCTAAGTTCTTCGCGAGTCTTGAACGAGTCATTTTACAGAATCCTAACCTGCGGCAGCCATGGTGAAGGGAAGTCAGGGAGAAAGAATCAGACTCTACGTCAGAGGAACAGTCCTTGGGTACAAAAGGTCCAAGTCAAACCAGTATCCAAGAACATCACTGATTCAGATTGAAGGTGTGAATACCAAGGAAGAGGTTGCATGGTATGCTGGAAAACGGTTGGCATATATTTACAAGGCCAAAGTGAAGCAAAATGGAACTCACTATCGGTGCATTTGGGGCAAGGTATCCAGACCTCATGGTAACAGTGGCATTGTTCGAGCTAAGTTTAAGTCAAACTTGCCCCCAAAATCCATGGGTGATAAAATTAGGGTATTTATGTACCCCAGCAACATATGAGTTCCTCAAATCAGCTAGCTAGAGGGGTAAGGTTTCGTTTCTTTCTCGACTTGATGGATCGATAGTTTTCTTTTACTTTACTGGACGCAATGTTTAGATGATGATGTTTTGATGTGAAACTTGACTAAATTTGGAAGGATCATTATGGAATCATACTTTGAATTTTGACCTAGTTTAATTTAGTGTGAAGGCATCTCTGCAAGACTTCACTTGCATTTAGATATCTGTTCTTGATACTATTGTGAGTTTAAGAAGCTTGATGGCAATAGCATGGCTTCGCATTAAATCCTAACATTTTGTGGGTCGGCGACGATATGGTAT

Coding sequence (CDS)

ATGGTGAAGGGAAGTCAGGGAGAAAGAATCAGACTCTACGTCAGAGGAACAGTCCTTGGGTACAAAAGGTCCAAGTCAAACCAGTATCCAAGAACATCACTGATTCAGATTGAAGGTGTGAATACCAAGGAAGAGGTTGCATGGTATGCTGGAAAACGGTTGGCATATATTTACAAGGCCAAAGTGAAGCAAAATGGAACTCACTATCGGTGCATTTGGGGCAAGGTATCCAGACCTCATGGTAACAGTGGCATTGTTCGAGCTAAGTTTAAGTCAAACTTGCCCCCAAAATCCATGGGTGATAAAATTAGGGTATTTATGTACCCCAGCAACATATGA

Protein sequence

MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI
Homology
[Close]
BLAST of CmoCh03G001340 vs. ExPASy Swiss-Prot
Match: Q9LMK0 (60S ribosomal protein L35a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35AA PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 2.5e-53
Identity = 93/112 (83.04%), Postives = 105/112 (93.75%), Query Frame = 0 

Query: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKG QGER+RLYVRGT+LGYKRSKSNQYP TSL+Q+EGVNT EEV+WY GKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 113
           K K+NG+HYRCIWGKV+RPHGNSG+VRAKF SNLPPKSMG ++RVFMYPSNI
Sbjct: 61  KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112

[Close]
BLAST of CmoCh03G001340 vs. ExPASy Swiss-Prot
Match: Q9C912 (60S ribosomal protein L35a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35AC PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 2.5e-53
Identity = 94/112 (83.93%), Postives = 105/112 (93.75%), Query Frame = 0 

Query: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKG QGER+RLYVRGT+LGYKRSKSNQYP TSL+QIEGVNT+EEV WY GKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 113
           K K+NG+HYRCIWGKV+RPHGNSG+VRAKF SNLPPKSMG ++RVFMYPSNI
Sbjct: 61  KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112

[Close]
BLAST of CmoCh03G001340 vs. ExPASy Swiss-Prot
Match: Q9FZH0 (60S ribosomal protein L35a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35AB PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 2.8e-52
Identity = 94/111 (84.68%), Postives = 104/111 (93.69%), Query Frame = 0 

Query: 2   VKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAK 61
           +KG QGER+RLYVRGTVLGYKRSKSNQYP TSLIQIEGVNT+EEV WY GKRLAYIYKAK
Sbjct: 1   MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAK 60

Query: 62  VKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 113
            K+NG+HYRCIWGKV+RPHGNSG+VR+KF SNLPPKSMG ++RVFMYPSNI
Sbjct: 61  TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111

[Close]
BLAST of CmoCh03G001340 vs. ExPASy Swiss-Prot
Match: P51422 (60S ribosomal protein L35a-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35AD PE=3 SV=2)

HSP 1 Score: 205.3 bits (521), Expect = 3.6e-52
Identity = 93/111 (83.78%), Postives = 104/111 (93.69%), Query Frame = 0 

Query: 2   VKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAK 61
           +KG QGER+RLYVRGTVLGYKRSKSNQYP TSL+QIEGVNT+EEV WY GKRLAYIYKAK
Sbjct: 1   MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAK 60

Query: 62  VKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 113
            K+NG+HYRCIWGKV+RPHGNSG+VR+KF SNLPPKSMG ++RVFMYPSNI
Sbjct: 61  TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111

[Close]
BLAST of CmoCh03G001340 vs. ExPASy Swiss-Prot
Match: P41056 (60S ribosomal protein L33-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL33B PE=1 SV=2)

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-27
Identity = 57/105 (54.29%), Postives = 76/105 (72.38%), Query Frame = 0 

Query: 8   ERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGT 67
           E  RLYV+G  L Y+RSK    P  SLI+IEGV T +E  +Y GKR+AY+Y+A  +  G+
Sbjct: 3   ESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQEAQFYLGKRIAYVYRASKEVRGS 62

Query: 68  HYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 113
             R +WGKV+R HGNSG+VRA F++NLP K+ G  +R+F+YPSNI
Sbjct: 63  KIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107

[Close]
BLAST of CmoCh03G001340 vs. ExPASy TrEMBL
Match: A0A6J1EL43 (60S ribosomal protein L35a-1-like OS=Cucurbita moschata OX=3662 GN=LOC111435550 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 6.0e-58
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 113
           KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI
Sbjct: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 112

[Close]
BLAST of CmoCh03G001340 vs. ExPASy TrEMBL
Match: A0A5A7TGR3 (60S ribosomal protein L35a-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G002100 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.3e-57
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNT+EEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 113
           KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI
Sbjct: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 112

[Close]
BLAST of CmoCh03G001340 vs. ExPASy TrEMBL
Match: A0A1S3B4N4 (60S ribosomal protein L35a-1-like OS=Cucumis melo OX=3656 GN=LOC103486112 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.3e-57
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNT+EEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 113
           KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI
Sbjct: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 112

[Close]
BLAST of CmoCh03G001340 vs. ExPASy TrEMBL
Match: A0A6J1HTF7 (60S ribosomal protein L35a-1-like OS=Cucurbita maxima OX=3661 GN=LOC111467293 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.3e-57
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKG QGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGRQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 113
           KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI
Sbjct: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 112

[Close]
BLAST of CmoCh03G001340 vs. ExPASy TrEMBL
Match: A0A6J1HSC2 (60S ribosomal protein L35a-1-like OS=Cucurbita maxima OX=3661 GN=LOC111466132 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.5e-56
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKGS+GER+RLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 113
           KVKQNGTHYRCIWGKVSR HGNSGIVRAKFKSNLPPKSMGDK+RVFMYPSNI
Sbjct: 61  KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 112

[Close]
BLAST of CmoCh03G001340 vs. NCBI nr
Match: XP_022928725.1 (60S ribosomal protein L35a-1-like [Cucurbita moschata] >XP_022928726.1 60S ribosomal protein L35a-1-like [Cucurbita moschata] >XP_022928728.1 60S ribosomal protein L35a-1-like [Cucurbita moschata] >XP_023522925.1 60S ribosomal protein L35a-1-like [Cucurbita pepo subsp. pepo] >XP_023543608.1 60S ribosomal protein L35a-1-like [Cucurbita pepo subsp. pepo] >XP_023543609.1 60S ribosomal protein L35a-1-like [Cucurbita pepo subsp. pepo] >XP_023543610.1 60S ribosomal protein L35a-1-like [Cucurbita pepo subsp. pepo] >KAG7033574.1 60S ribosomal protein L35a-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 233.0 bits (593), Expect = 1.2e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 113
           KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI
Sbjct: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 112

[Close]
BLAST of CmoCh03G001340 vs. NCBI nr
Match: XP_008442180.1 (PREDICTED: 60S ribosomal protein L35a-1-like [Cucumis melo] >KAA0041236.1 60S ribosomal protein L35a-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 231.9 bits (590), Expect = 2.7e-57
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNT+EEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 113
           KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI
Sbjct: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 112

[Close]
BLAST of CmoCh03G001340 vs. NCBI nr
Match: XP_022967923.1 (60S ribosomal protein L35a-1-like [Cucurbita maxima] >XP_022967925.1 60S ribosomal protein L35a-1-like [Cucurbita maxima] >XP_022967926.1 60S ribosomal protein L35a-1-like [Cucurbita maxima])

HSP 1 Score: 231.1 bits (588), Expect = 4.7e-57
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKG QGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGRQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 113
           KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI
Sbjct: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 112

[Close]
BLAST of CmoCh03G001340 vs. NCBI nr
Match: XP_011653915.1 (60S ribosomal protein L35a-1 [Cucumis sativus] >KAE8649740.1 hypothetical protein Csa_012440 [Cucumis sativus])

HSP 1 Score: 229.9 bits (585), Expect = 1.0e-56
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKG QGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNT+EEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGRQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 113
           KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI
Sbjct: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 112

[Close]
BLAST of CmoCh03G001340 vs. NCBI nr
Match: XP_038883794.1 (60S ribosomal protein L35a-1-like [Benincasa hispida])

HSP 1 Score: 229.6 bits (584), Expect = 1.4e-56
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKG QGER+RLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNT+EEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 113
           KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI
Sbjct: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 112

[Close]
BLAST of CmoCh03G001340 vs. TAIR 10
Match: AT1G07070.1 (Ribosomal protein L35Ae family protein )

HSP 1 Score: 209.1 bits (531), Expect = 1.8e-54
Identity = 93/112 (83.04%), Postives = 105/112 (93.75%), Query Frame = 0 

Query: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKG QGER+RLYVRGT+LGYKRSKSNQYP TSL+Q+EGVNT EEV+WY GKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 113
           K K+NG+HYRCIWGKV+RPHGNSG+VRAKF SNLPPKSMG ++RVFMYPSNI
Sbjct: 61  KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112

[Close]
BLAST of CmoCh03G001340 vs. TAIR 10
Match: AT1G74270.1 (Ribosomal protein L35Ae family protein )

HSP 1 Score: 209.1 bits (531), Expect = 1.8e-54
Identity = 94/112 (83.93%), Postives = 105/112 (93.75%), Query Frame = 0 

Query: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 60
           MVKG QGER+RLYVRGT+LGYKRSKSNQYP TSL+QIEGVNT+EEV WY GKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKA 60

Query: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 113
           K K+NG+HYRCIWGKV+RPHGNSG+VRAKF SNLPPKSMG ++RVFMYPSNI
Sbjct: 61  KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112

[Close]
BLAST of CmoCh03G001340 vs. TAIR 10
Match: AT1G41880.1 (Ribosomal protein L35Ae family protein )

HSP 1 Score: 205.7 bits (522), Expect = 2.0e-53
Identity = 94/111 (84.68%), Postives = 104/111 (93.69%), Query Frame = 0 

Query: 2   VKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAK 61
           +KG QGER+RLYVRGTVLGYKRSKSNQYP TSLIQIEGVNT+EEV WY GKRLAYIYKAK
Sbjct: 1   MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAK 60

Query: 62  VKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 113
            K+NG+HYRCIWGKV+RPHGNSG+VR+KF SNLPPKSMG ++RVFMYPSNI
Sbjct: 61  TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111

[Close]
BLAST of CmoCh03G001340 vs. TAIR 10
Match: AT3G55750.1 (Ribosomal protein L35Ae family protein )

HSP 1 Score: 205.3 bits (521), Expect = 2.6e-53
Identity = 93/111 (83.78%), Postives = 104/111 (93.69%), Query Frame = 0 

Query: 2   VKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAK 61
           +KG QGER+RLYVRGTVLGYKRSKSNQYP TSL+QIEGVNT+EEV WY GKRLAYIYKAK
Sbjct: 1   MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAK 60

Query: 62  VKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 113
            K+NG+HYRCIWGKV+RPHGNSG+VR+KF SNLPPKSMG ++RVFMYPSNI
Sbjct: 61  TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111

The following BLAST results are available for this feature:
BLAST of CmoCh03G001340 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LMK02.5e-5383.0460S ribosomal protein L35a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35AA PE=3 SV=... [more]
Q9C9122.5e-5383.9360S ribosomal protein L35a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35AC PE=3 SV=... [more]
Q9FZH02.8e-5284.6860S ribosomal protein L35a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35AB PE=3 SV=... [more]
P514223.6e-5283.7860S ribosomal protein L35a-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35AD PE=3 SV=... [more]
P410561.1e-2754.2960S ribosomal protein L33-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2... [more]
BLAST of CmoCh03G001340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EL436.0e-58100.0060S ribosomal protein L35a-1-like OS=Cucurbita moschata OX=3662 GN=LOC111435550 ... [more]
A0A5A7TGR31.3e-5799.1160S ribosomal protein L35a-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A1S3B4N41.3e-5799.1160S ribosomal protein L35a-1-like OS=Cucumis melo OX=3656 GN=LOC103486112 PE=3 S... [more]
A0A6J1HTF72.3e-5799.1160S ribosomal protein L35a-1-like OS=Cucurbita maxima OX=3661 GN=LOC111467293 PE... [more]
A0A6J1HSC22.5e-5696.4360S ribosomal protein L35a-1-like OS=Cucurbita maxima OX=3661 GN=LOC111466132 PE... [more]
BLAST of CmoCh03G001340 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022928725.11.2e-57100.0060S ribosomal protein L35a-1-like [Cucurbita moschata] >XP_022928726.1 60S ribos... [more]
XP_008442180.12.7e-5799.11PREDICTED: 60S ribosomal protein L35a-1-like [Cucumis melo] >KAA0041236.1 60S ri... [more]
XP_022967923.14.7e-5799.1160S ribosomal protein L35a-1-like [Cucurbita maxima] >XP_022967925.1 60S ribosom... [more]
XP_011653915.11.0e-5698.2160S ribosomal protein L35a-1 [Cucumis sativus] >KAE8649740.1 hypothetical protei... [more]
XP_038883794.11.4e-5697.3260S ribosomal protein L35a-1-like [Benincasa hispida][more]
BLAST of CmoCh03G001340 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G07070.11.8e-5483.04Ribosomal protein L35Ae family protein [more]
AT1G74270.11.8e-5483.93Ribosomal protein L35Ae family protein [more]
AT1G41880.12.0e-5384.68Ribosomal protein L35Ae family protein [more]
AT3G55750.12.6e-5383.78Ribosomal protein L35Ae family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001780Ribosomal protein L35APFAMPF01247Ribosomal_L35Aecoord: 12..106
e-value: 4.8E-43
score: 145.3
IPR001780Ribosomal protein L35APANTHERPTHR1090260S RIBOSOMAL PROTEIN L35Acoord: 1..112
IPR001780Ribosomal protein L35AHAMAPMF_00573Ribosomal_L35Aecoord: 14..106
score: 25.259314
IPR038661Ribosomal protein L35A superfamilyGENE3D2.40.10.190translation elongation factor selb, chain A, domain 4coord: 7..112
e-value: 3.2E-50
score: 170.6
NoneNo IPR availablePANTHERPTHR10902:SF2060S RIBOSOMAL PROTEIN L35A-1coord: 1..112
IPR018266Ribosomal protein L35Ae, conserved sitePROSITEPS01105RIBOSOMAL_L35AEcoord: 74..95
IPR009000Translation protein, beta-barrel domain superfamilySUPERFAMILY50447Translation proteinscoord: 12..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G001340.1CmoCh03G001340.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
biological_process GO:0006412 translation
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0005829 cytosol
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome