CmoCh03G001070 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh03G001070
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr03: 1527430 .. 1529811 (+)
RNA-Seq ExpressionCmoCh03G001070
SyntenyCmoCh03G001070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGTTCGAAAGCTGTCGCTTCCCTTTCTCGTTTTGAGCAACAGAGTTTATCTCCAAAAGAAACAAAAGAAAAAATAAGTAAAAAGCCAAAGAGAAATTAAAGAGAGAGAAAAAAATTATAATGGCGGTCCCGCAGCGGTGGTGAAAGCAATTGCACAATTCCAACGATTCATCGATAATCAATCATTAATCGTTTTAACTTTTTGTTCGAATTCCAAAGCCGATGAGGTATGGGCTAATCCCAGTTCTGGTCCCCGTCGGATTGAGGTTAGTTTTCTTTTCTTTTAATCCCTTTCTTCAATTCCATTTCTTGATTTGTTTTTAACGTTCGTATTGATTTTGCCACTTTTGTGCCACCCCCAGAATTTATCATTTGAATTGATCGTCTGTTTCTGCAATTTGACTCGGAATTCTCCACTAGGGATATGGATTTTTTTTTGTTTTTTTTGTAAGATTTTCTTCTGTTATTGTTCTTGGTTTTTGTGGGGTTCTGTTTTTCTTTCTGGAGACTTGTAAATGAGGTCTTGTTTTGTTCCCTTCCTTAGGTTTCTTGCAAATGTTGTTTCGTTGTTGAATATTGATTTTCTAATTCAGAAATGGTTTATCAATTTGTAATTTGTAAAAGAGGAAGAACAGGGTTTTGCATTCGTGCTGCTTGGTCTCGTTTCGTTCGATTTCAGTCCATTTTTTAGGGCTTTCGGTGGATGAATTTTGACTTAATCACATGGTTTTTGAAATTTGACTGAAATAGGGTTGTTCTGATGGATTCAAATGAGCCTATGATTTCATTAAGTGATTTATCTCCACAATTTTGAAGCATTTGATATGAACTGAAACTTTTTTGTAAGACTATGTTAGCGTTAATGCTTTGTTACTTTTCCTTTTATATTTCTCTTCCAAAACAAAATAATCGAGTTAAGTTAGCGTAGGATGTTTCATTTTGTGTTCATGATTAGACATCTTTTGCTAGAGTTTGATTATAATGGGCTCTGTATGCAACCTGTAGCTGGATTGAATCCTTCGCGATGCAAATGCCCTCTTCCTTCTCCCAACCCAACTAAGGTGAAACACCTACTCCTAACAAAAGCGAAGCAAGCTGCGCTACTACACCGCGCATACGTTTTTTAGCTGGCTTCAAAGAAAGAAAAGCTGGCGCTCCTGCCCCTAACCTAGGTTGAGACCTTTCAAGATTCTTAGTCCAGCACACCCTGCAATCTTTCTAAAGCGCTAACGCCGCTCTAATACGCCCTTATTAGATAGAGTCGATTTCCTCTTTTGTTAATGGACACTCTCTCAATTCTAAAAATTAAAAGAGGGGCAAATGAGTGGAAAAGGTTGAAATCTTTTCTTAATAAAATTTTGAATTTAAGATTGCCCTTCCTTTGTCTTGGCTCTACCTATGGTTCTTGGCTTATTCAGAAAATTAATGATTCTGGTGATGGTGGCAGTTTGGGGTTAGAGGGACAGAAGAGAAAAATCTTGCTTACATTTATTTGGGTATGGGGAAAGCATAAAGAATAACTTAGGTCCCCAGAGATGATTCCAAGTTGATATTAGACAAACCGTAATATTGAGCGAGCTCCGTGTTATTTGGGATTTCACTATTGCTTTGGGTTTGGAAGGAATCTAGATTGCTTTATATTTATTTCATCAAGGTTTTTCAAGTAAAGAGTTCATCAAACTAAATAAATTTTGAAGTTGATCTTTCAGTATTTTTAAGCTTCTTTGCAAATGAATGCCTGGACGTGCACGTGCCTTGGCACAATCCAACTTTAAGCTAGGATGTTAAACTCATAGTTTTGACAAGCTAGCCTTGTTGGGTTTAGGTTCGGTAGTACGAGTTCACATGCTTGGACTATTCAATGGAATGGTTTGTAAAATCTCGAGGTTTGTGTAATATGTGTTTGTTTAAGATTAATAATATACAAACTTCACATGTAGTAGAAAAGGTGGGTTTTAAACCTTGAATTTTGTGTAGTTTGTAGGATTAGCGAACTTATAGCTTGGAATACGAAACTCCAAGTACCATACGCTCGAATTCTGTTAACTCAATGTTATATAAATCTAACTATGAGCTAGCGACCAATATCGGTTACTAAAGAATCTAGCAAATGGCCAGTAAGCATATATGTGTTGTTTCCAGTTCAGATTATAAGAAAATGAGGGTGTTGCTAAGTCCTGTATGTTATTAAGCATTGTTGATCATGTTTAGTTTTCGTTATCACCCGACTTTCGTTCAAATTATACCAACAAATCTCCGAACAACACGAAACATTTCGTCTAATATGTTCACTGACATGCCCTTTTCCTTTTTTTGTCTGGTTTAATAGGATTGAACTCATGGATGAGTGATGGCTGCCATATGGTGAAGCATTTCCAATAA

mRNA sequence

CTGTTCGAAAGCTGTCGCTTCCCTTTCTCGTTTTGAGCAACAGAGTTTATCTCCAAAAGAAACAAAAGAAAAAATAAGTAAAAAGCCAAAGAGAAATTAAAGAGAGAGAAAAAAATTATAATGGCGGTCCCGCAGCGGTGGTGAAAGCAATTGCACAATTCCAACGATTCATCGATAATCAATCATTAATCGTTTTAACTTTTTGTTCGAATTCCAAAGCCGATGAGGTATGGGCTAATCCCAGTTCTGGTCCCCGTCGGATTGAGACATCTTTTGCTAGAGTTTGATTATAATGGGCTCTGTATGCAACCTGTAGCTGGATTGAATCCTTCGCGATGCAAATGCCCTCTTCCTTCTCCCAACCCAACTAAGGTGAAACACCTACTCCTAACAAAAGCGAAGCAAGCTGCGCTACTACACCGCGCATACAAAATTAATGATTCTGGTGATGGTGGCAGTTTGGGGTTAGAGGGACAGAAGAGAAAAATCTTGCTTACATTTATTTGGTACGAGTTCACATGCTTGGACTATTCAATGGAATGGTTTGTAAAATCTCGAGGATTGAACTCATGGATGAGTGATGGCTGCCATATGGTGAAGCATTTCCAATAA

Coding sequence (CDS)

ATGAGGTATGGGCTAATCCCAGTTCTGGTCCCCGTCGGATTGAGACATCTTTTGCTAGAGTTTGATTATAATGGGCTCTGTATGCAACCTGTAGCTGGATTGAATCCTTCGCGATGCAAATGCCCTCTTCCTTCTCCCAACCCAACTAAGGTGAAACACCTACTCCTAACAAAAGCGAAGCAAGCTGCGCTACTACACCGCGCATACAAAATTAATGATTCTGGTGATGGTGGCAGTTTGGGGTTAGAGGGACAGAAGAGAAAAATCTTGCTTACATTTATTTGGTACGAGTTCACATGCTTGGACTATTCAATGGAATGGTTTGTAAAATCTCGAGGATTGAACTCATGGATGAGTGATGGCTGCCATATGGTGAAGCATTTCCAATAA

Protein sequence

MRYGLIPVLVPVGLRHLLLEFDYNGLCMQPVAGLNPSRCKCPLPSPNPTKVKHLLLTKAKQAALLHRAYKINDSGDGGSLGLEGQKRKILLTFIWYEFTCLDYSMEWFVKSRGLNSWMSDGCHMVKHFQ
Homology
[Close]
BLAST of CmoCh03G001070 vs. NCBI nr
Match: KAG7033558.1 (hypothetical protein SDJN02_03280 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 155.6 bits (392), Expect = 2.9e-34
Identity = 83/129 (64.34%), Postives = 87/129 (67.44%), Query Frame = 0 

Query: 1   MRYGLIPVLVPVGLRHLLLEFDYNGLCMQPVAGLNPSRCKCPLPSPNPTKVKHLLLTKAK 60
           MRYGLIPVLVPVGLRHLLLEFDYNGLCMQPVAGLNP RCKCPLPSPNPTKVKHLLLTKAK
Sbjct: 1   MRYGLIPVLVPVGLRHLLLEFDYNGLCMQPVAGLNPLRCKCPLPSPNPTKVKHLLLTKAK 60

Query: 61  QAALLHRAYKINDSGDGGSLGLEGQKRKILLTFIWYEFTCLDYSMEWFVKSRGLNSWMSD 120
           QAAL  R   +         G + +K                        + GLNSWMSD
Sbjct: 61  QAALRARIRFL--------AGFKERKAGAP------------------APNLGLNSWMSD 103

Query: 121 GCHMVKHFQ 130
           GCHMVKHFQ
Sbjct: 121 GCHMVKHFQ 103

The following BLAST results are available for this feature:
BLAST of CmoCh03G001070 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh03G001070 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh03G001070 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033558.12.9e-3464.34hypothetical protein SDJN02_03280 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of CmoCh03G001070 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G001070.1CmoCh03G001070.1mRNA