CmoCh03G000800 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G000800
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein POLYCHOME-like
Location	Cmo_Chr03: 1216945 .. 1219790 (-)
RNA-Seq Expression	CmoCh03G000800
Synteny	CmoCh03G000800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTATATTAGGGCTTCTCTTGTTTTCTTTTTCTTTGAAATGATTGTTTTCTTGTCGTTTCCTTTTGAAGTTCCATAATGTCGGAATCAAGAGATAGATTGGAGAGGCAAGTAGATCATGCCGAGGTATTTGCTCGTTGGAGATCGGAAGGTATATTGGATGAGAAAGAAATGAGTACTAATTTGTTAAGGACTCCGATTTCTCGCGCCACAACGACGACTACAGATCAACAAAGACCTACGAATCTGAGACGCAGTTTTGGTTCTCCCATTTCTGGTGGAATTGGGCGAAATAGATTTCTCTACAGATCTCCTGTGTTGAGCCGCGAGAATGCGGTGGCTGGGAGCTCCCGGCGGAGTAGATCTCGGGGGAGGAATAGTGTGTTACCGATTTGGTATCCAAGAACTCCTCTCCGCGACATAACTGCAGTTGTGAGGGTAAATGACTAATCCCGTTACTTTGTTTTTGTTCTGCTAAAATCTTTCAATATTTTGTTCTGTTCTGCGTATAATTTTGTGGATTACTTGGATGTAGTATCCAGTGAATTTGATTCATATGATATATGGAAAATTCACTCTCATTGTTATTGCATATGGTCTCTGGTATTATATTGTTCTCTGATACAGTATACTTGTTTGGAGTCATTCAAAATTGAATTTGCTTGATCTTCGGGAAAGATCCTTTTGATTTTCTGGTGTAGTTGTTATTCTTGTTTCTGTTTTTCAGTTGGTAGCATTAGGTTTGATTTGATTTGAATCGATTTTCGACTGAAAATGTTAATGCTATCTCTAATTCTTTTAGTGAATTCTTAGGTTGGATCACTTTCCTTTTTCTTTAAGTTAATTAATCAATAAATTTTCAGTGCTTTTAAGCTATGTTCTACCAACCTGTTTGTCTAAAAAGAAGATTCTTTTGGTTTTGTAACGTCCATGCCCAATGATTTCATATGAAACATCAACAGTCTGGATAATGAGATCCTGTCCACCATTAATTAAAGCTATCATAATGCTCCTTTTTTGGTATTAATTAATTATTTTTTTCTTTGATTCTAATTGTTTTTTAGGCTTCATTTTCACCTGTTTTTAGAACTACTTTTTGGTGGGCTCAAATATGCTTTGGCTGGTTACTAGTATGTGTTGACTTGATACCCAATGATCATTTTGGCCCTATGTGAAAGCTGTAATTTGGATGTAAAAAATACACATACACAAGCAATAATAGTTTAACATTCTGATTGAAATACATATTAACACTGATATTATCATTTCCTTGTGGGACGTTTATAATGCTTATTAAACATGTGTTTGATACTTGTGAATGGGCCAAAACCCTAATGGGCTTCCTTCATAAAATCGTGTGCTCGCTTCTGGGTGTTATTTCTATCGGAATTCGTAGCTCAATTTGTGTTCTCCAAGCAAATGATCTTAGTAATGTAGAAAAATAGATGCATGGTTTTTAAAAATGTATGCTTTTTGTGACCTCATTTTCCAGCAAATATCTTATCGAGGTATAAATGCATCGCACCTTCACTATGTCACGTGCTTGTGTTTGTGCATCATTCATCTAGAATCTTCCCATCTCTGTAAGTTGGTTCCCTGATATTTTTGCTGTCTATGGGGAATATTTCCCCATCTTTTCACGTCTTTCGGGATCTTTTCAGTCTTTCGGGATGTTAATGAGTAGCTACAATAGTTTAAGCTCACCACTAGTTGATATTATCTTTTTTGTGCTCTCTTCAAGATCATTCCCCTCAAGATTTTAAAACGCATCTACTAGGGAGCGGTTTCCACCTCTTATAAAGGAATATTTTGTTCCCTCTCCAACCAATGTGAATGGGATCTCACAATTCAGCCCCTTGTGGAACAACGTCCTTGTTGTCACATTGCGTGGTGTCTTTCTCTGATATCATTTATAACAACACAAGCTCACTGCCAATAGATATTATCTGCTTTGGCCTAGTACAAATGGTATCAAAGTTAGACATCAAGCGACGTGCTAGTGAGGACGTTGGGCCCCCAAAAGAGATGGATTATGAGATCCCATATTGGTTGGAGAGGGGGAAGGAACGAAGCATTTTTCATAAGAGTGAAGAAACCTCCCTCTAGTAAATGCGTTCTAAAATTGTGAGACTAACGACGATACGTAACAACCCAAGCTAACAATATCTATTAGTAATGGGTTCAATAGTGAATTGTCGCTCATGCTTTTATATATGTTCTTCAGATTCCCATTTTTATAGTTTTCAACTTATTTTGCTTTTAATCAGGCAATTGAAAGAACAAGAGCTCGCATGAAAGAAAACAAAGGCCCAGGAAGTGATATTAGTCCTGCTCCCTCGGACGAAAGAGTTTTAGAGGCAAGCATTTTTCTGGTCACCCCAAAGGCAACCATAGGCAAAGTGCCAAAGATTCTTCGTGGAATCACAAATCAAAACGTGGGAGGGGCAGAGACTCTGACTCCCCAGAATAAGCTTTTGAACTCCATAGACAAGGTGGAGAAAGTAGTAATGGAGGAGCTGCAGAAATTGAAAAGGACAAGCAGTGCGAAGAAAGCAGAGAGGGAGAAAAGAGTTCGCACTTTAATGTCATTTCGTTGATTCAGTTCAACAAAGACACGCCCAGAATTAGACAACGCCCACATCAAAGTCCAAACTCCTTCCCCCTCTTTGCCCTCTTGGCAATGGCAATCATCAGACTCACTCAGAATTTGGATCAACCATCTGCTGATGATTGCTTTGGTCAAGAACGCTCGTTGATCAGAGGGAAGGAGAAAGAGATCATCAGACTCACTCAGAATTTGAATCCTTTTCATTTGCAAGAACCATCTTTGCTTTTAGATGTTTAATA

mRNA sequence

AGTTATATTAGGGCTTCTCTTGTTTTCTTTTTCTTTGAAATGATTGTTTTCTTGTCGTTTCCTTTTGAAGTTCCATAATGTCGGAATCAAGAGATAGATTGGAGAGGCAAGTAGATCATGCCGAGGTATTTGCTCGTTGGAGATCGGAAGGTATATTGGATGAGAAAGAAATGAGTACTAATTTGTTAAGGACTCCGATTTCTCGCGCCACAACGACGACTACAGATCAACAAAGACCTACGAATCTGAGACGCAGTTTTGGTTCTCCCATTTCTGGTGGAATTGGGCGAAATAGATTTCTCTACAGATCTCCTGTGTTGAGCCGCGAGAATGCGGTGGCTGGGAGCTCCCGGCGGAGTAGATCTCGGGGGAGGAATAGTGTGTTACCGATTTGGTATCCAAGAACTCCTCTCCGCGACATAACTGCAGTTGTGAGGGCAATTGAAAGAACAAGAGCTCGCATGAAAGAAAACAAAGGCCCAGGAAGTGATATTAGTCCTGCTCCCTCGGACGAAAGAGTTTTAGAGGCAAGCATTTTTCTGGTCACCCCAAAGGCAACCATAGGCAAAGTGCCAAAGATTCTTCGTGGAATCACAAATCAAAACGTGGGAGGGGCAGAGACTCTGACTCCCCAGAATAAGCTTTTGAACTCCATAGACAAGGTGGAGAAAGTAGTAATGGAGGAGCTGCAGAAATTGAAAAGGACAAGCAGTGCGAAGAAAGCAGAGAGGGAGAAAAGAGTTCGCACTTTAATGTCATTTCGTTGATTCAGTTCAACAAAGACACGCCCAGAATTAGACAACGCCCACATCAAAGTCCAAACTCCTTCCCCCTCTTTGCCCTCTTGGCAATGGCAATCATCAGACTCACTCAGAATTTGGATCAACCATCTGCTGATGATTGCTTTGGTCAAGAACGCTCGTTGATCAGAGGGAAGGAGAAAGAGATCATCAGACTCACTCAGAATTTGAATCCTTTTCATTTGCAAGAACCATCTTTGCTTTTAGATGTTTAATA

Coding sequence (CDS)

ATGTCGGAATCAAGAGATAGATTGGAGAGGCAAGTAGATCATGCCGAGGTATTTGCTCGTTGGAGATCGGAAGGTATATTGGATGAGAAAGAAATGAGTACTAATTTGTTAAGGACTCCGATTTCTCGCGCCACAACGACGACTACAGATCAACAAAGACCTACGAATCTGAGACGCAGTTTTGGTTCTCCCATTTCTGGTGGAATTGGGCGAAATAGATTTCTCTACAGATCTCCTGTGTTGAGCCGCGAGAATGCGGTGGCTGGGAGCTCCCGGCGGAGTAGATCTCGGGGGAGGAATAGTGTGTTACCGATTTGGTATCCAAGAACTCCTCTCCGCGACATAACTGCAGTTGTGAGGGCAATTGAAAGAACAAGAGCTCGCATGAAAGAAAACAAAGGCCCAGGAAGTGATATTAGTCCTGCTCCCTCGGACGAAAGAGTTTTAGAGGCAAGCATTTTTCTGGTCACCCCAAAGGCAACCATAGGCAAAGTGCCAAAGATTCTTCGTGGAATCACAAATCAAAACGTGGGAGGGGCAGAGACTCTGACTCCCCAGAATAAGCTTTTGAACTCCATAGACAAGGTGGAGAAAGTAGTAATGGAGGAGCTGCAGAAATTGAAAAGGACAAGCAGTGCGAAGAAAGCAGAGAGGGAGAAAAGAGTTCGCACTTTAATGTCATTTCGTTGA

Protein sequence

MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTNLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREKRVRTLMSFR

Homology

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BLAST of CmoCh03G000800 vs. ExPASy Swiss-Prot
Match: O48533 (Protein POLYCHOME OS=Arabidopsis thaliana OX=3702 GN=PYM PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.0e-45
Identity = 129/262 (49.24%), Postives = 156/262 (59.54%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGI-LDEKEMSTNLLRTPISRATTTTTD--------- 60
           M E+RDR+ERQVD+   F   RS GI LDE     NL  +P+ R  +  T          
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 61  -QQRPTNLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPR 120
              R   +R +FG   +GG  R +  +RSP   REN   G +RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSP-QGRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 121 TPLRDITAVVRAIERTRARMKENKGPGSDI-SPAPSDERVLEASI-----------FLVT 180
           TPLRDI+AVVRAIER RARM E  G G DI +P P    VL++ +            +VT
Sbjct: 121 TPLRDISAVVRAIERRRARMGE--GVGRDIETPTPQQLGVLDSLVPLSGAHLEHDYSMVT 180

Query: 181 PKATIG----------KVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKL 230
           P  +IG          KV +IL  IT +N G  + LTP+ KLLNSIDKVEKVVMEE+QK+
Sbjct: 181 PGPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKM 240

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BLAST of CmoCh03G000800 vs. ExPASy Swiss-Prot
Match: Q9M2R1 (Protein GIGAS CELL1 OS=Arabidopsis thaliana OX=3702 GN=GIG1 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.8e-27
Identity = 104/254 (40.94%), Postives = 134/254 (52.76%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGI-LDEKEMSTNLLRTPISRATTTTTDQQRPTNLRR 60
           M E+RDR ER VD++ +FA  R  GI LDE +   +L+ +P++    +            
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLIESPVNPDIGSIGGTGGLVRGNF 60

Query: 61  SFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVV 120
           +   P +G  G   F  R P   REN    ++RR R  G   +LP WYPRTPLRDIT +V
Sbjct: 61  TTWRPGNGRGGHTPF--RLP-QGRENMPIVTARRGRGGG---LLPSWYPRTPLRDITHIV 120

Query: 121 RAIERTRARMKENKGPGSDIS-----PAPSDERVLEASI--------FLVTPKATIG--- 180
           RAIER R       G G D       P      VLE+ +         +VTP  ++G   
Sbjct: 121 RAIERRR-----GAGTGGDDGRVIEIPTHRQVGVLESPVPLSGEHKCSMVTPGPSVGFKR 180

Query: 181 -------KVPKILRGITNQNV-GGAETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKK 230
                  KV K+L  IT +     A  +TP+ KLLNSIDKVEK+VM E+QKLK T  AK+
Sbjct: 181 SCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAEIQKLKSTPQAKR 240

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BLAST of CmoCh03G000800 vs. ExPASy TrEMBL
Match: A0A6J1ESA2 (protein POLYCHOME-like OS=Cucurbita moschata OX=3662 GN=LOC111435520 PE=4 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 8.0e-118
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTNLRRS 60
           MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTNLRRS
Sbjct: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTNLRRS 60

Query: 61  FGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR 120
           FGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR
Sbjct: 61  FGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR 120

Query: 121 AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA 180
           AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA
Sbjct: 121 AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA 180

Query: 181 ETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREKRVRTLMSFR 230
           ETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREKRVRTLMSFR
Sbjct: 181 ETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREKRVRTLMSFR 229

[Close]

BLAST of CmoCh03G000800 vs. ExPASy TrEMBL
Match: A0A6J1HTB4 (protein POLYCHOME-like OS=Cucurbita maxima OX=3661 GN=LOC111467270 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 3.2e-114
Identity = 224/229 (97.82%), Postives = 224/229 (97.82%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTNLRRS 60
           MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLL TPISRATTTTT QQRPTNLRRS
Sbjct: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLGTPISRATTTTTAQQRPTNLRRS 60

Query: 61  FGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR 120
           FGSPISGGIGRNRFLYRSP LSRENAVAG SRRSRSRGRNSVLPIWYPRTPLRDITAVVR
Sbjct: 61  FGSPISGGIGRNRFLYRSPALSRENAVAGISRRSRSRGRNSVLPIWYPRTPLRDITAVVR 120

Query: 121 AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA 180
           AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA
Sbjct: 121 AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA 180

Query: 181 ETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREKRVRTLMSFR 230
           E LTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREKRVRTLMSFR
Sbjct: 181 EILTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREKRVRTLMSFR 229

[Close]

BLAST of CmoCh03G000800 vs. ExPASy TrEMBL
Match: A0A5D3BM43 (Protein POLYCHOME OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G00330 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 2.1e-94
Identity = 197/249 (79.12%), Postives = 211/249 (84.74%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPT----- 60
           MSE+RDRLERQVD+AEVFAR RSEGILDE+EM +NL+ TPI+RATTTT  QQRPT     
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 60

Query: 61  ----NLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTP 120
               NLRR+FGSPISGGIGRNRFLYR+PVLSREN  AGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 61  GGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 121 LRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEAS-----------IFLVTPKA 180
           LRDITAVVRAIERTRAR++EN+G GSD SPAPSDER LE S           I L+TPK 
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 181 TIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREK 230
           T+GKVPKILRGI N+N  GAETLTPQ KLLNSIDKVEKVVMEELQKLKRT SAKKAEREK
Sbjct: 181 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

[Close]

BLAST of CmoCh03G000800 vs. ExPASy TrEMBL
Match: A0A1S3CDA1 (protein POLYCHOME OS=Cucumis melo OX=3656 GN=LOC103499559 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 2.1e-94
Identity = 197/249 (79.12%), Postives = 211/249 (84.74%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPT----- 60
           MSE+RDRLERQVD+AEVFAR RSEGILDE+EM +NL+ TPI+RATTTT  QQRPT     
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 60

Query: 61  ----NLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTP 120
               NLRR+FGSPISGGIGRNRFLYR+PVLSREN  AGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 61  GGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 121 LRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEAS-----------IFLVTPKA 180
           LRDITAVVRAIERTRAR++EN+G GSD SPAPSDER LE S           I L+TPK 
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 181 TIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREK 230
           T+GKVPKILRGI N+N  GAETLTPQ KLLNSIDKVEKVVMEELQKLKRT SAKKAEREK
Sbjct: 181 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

[Close]

BLAST of CmoCh03G000800 vs. ExPASy TrEMBL
Match: A0A0A0KY99 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152290 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 1.1e-93
Identity = 196/249 (78.71%), Postives = 210/249 (84.34%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRP------ 60
           MSE+RDRLERQVD+AEVFAR RSEGILDE+EM +NL+ TPI+RATTT T QQRP      
Sbjct: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 124

Query: 61  ---TNLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTP 120
              TNLRR+FGSPISGGIGRNRFLYR+PVLSREN  AGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 125 GGGTNLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 184

Query: 121 LRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEAS-----------IFLVTPKA 180
           LRDITAVVRAIERTRAR++EN+G GSD SPAPSDER LE S           I L+TPK 
Sbjct: 185 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 244

Query: 181 TIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREK 230
           T+GKVPKILRGI N+N  GAE LTPQ KLLNSIDKVEKVVMEELQKLKRT SAKKAEREK
Sbjct: 245 TVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 304

[Close]

BLAST of CmoCh03G000800 vs. NCBI nr
Match: XP_022928675.1 (protein POLYCHOME-like [Cucurbita moschata] >KAG7033539.1 Protein POLYCHOME, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 433.0 bits (1112), Expect = 1.7e-117
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTNLRRS 60
           MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTNLRRS
Sbjct: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTNLRRS 60

Query: 61  FGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR 120
           FGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR
Sbjct: 61  FGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR 120

Query: 121 AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA 180
           AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA
Sbjct: 121 AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA 180

Query: 181 ETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREKRVRTLMSFR 230
           ETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREKRVRTLMSFR
Sbjct: 181 ETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREKRVRTLMSFR 229

[Close]

BLAST of CmoCh03G000800 vs. NCBI nr
Match: XP_023543597.1 (protein POLYCHOME-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 425.2 bits (1092), Expect = 3.5e-115
Identity = 226/229 (98.69%), Postives = 226/229 (98.69%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTNLRRS 60
           MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLL TPISRATTTTT QQRPTNLRRS
Sbjct: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLGTPISRATTTTTVQQRPTNLRRS 60

Query: 61  FGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR 120
           FGSPISGGIGRNRFLYRSPV SRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR
Sbjct: 61  FGSPISGGIGRNRFLYRSPVFSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR 120

Query: 121 AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA 180
           AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA
Sbjct: 121 AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA 180

Query: 181 ETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREKRVRTLMSFR 230
           ETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREKRVRTLMSFR
Sbjct: 181 ETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREKRVRTLMSFR 229

[Close]

BLAST of CmoCh03G000800 vs. NCBI nr
Match: KAG6603234.1 (Protein POLYCHOME, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 425.2 bits (1092), Expect = 3.5e-115
Identity = 226/229 (98.69%), Postives = 227/229 (99.13%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTNLRRS 60
           MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLL +PISRATTTTT QQRPTNLRRS
Sbjct: 91  MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLGSPISRATTTTTVQQRPTNLRRS 150

Query: 61  FGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR 120
           FGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR
Sbjct: 151 FGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR 210

Query: 121 AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA 180
           AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA
Sbjct: 211 AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA 270

Query: 181 ETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREKRVRTLMSFR 230
           ETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREKRVRTLMSFR
Sbjct: 271 ETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREKRVRTLMSFR 319

[Close]

BLAST of CmoCh03G000800 vs. NCBI nr
Match: XP_022967896.1 (protein POLYCHOME-like [Cucurbita maxima])

HSP 1 Score: 421.0 bits (1081), Expect = 6.5e-114
Identity = 224/229 (97.82%), Postives = 224/229 (97.82%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPTNLRRS 60
           MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLL TPISRATTTTT QQRPTNLRRS
Sbjct: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLGTPISRATTTTTAQQRPTNLRRS 60

Query: 61  FGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVVR 120
           FGSPISGGIGRNRFLYRSP LSRENAVAG SRRSRSRGRNSVLPIWYPRTPLRDITAVVR
Sbjct: 61  FGSPISGGIGRNRFLYRSPALSRENAVAGISRRSRSRGRNSVLPIWYPRTPLRDITAVVR 120

Query: 121 AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA 180
           AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA
Sbjct: 121 AIERTRARMKENKGPGSDISPAPSDERVLEASIFLVTPKATIGKVPKILRGITNQNVGGA 180

Query: 181 ETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREKRVRTLMSFR 230
           E LTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREKRVRTLMSFR
Sbjct: 181 EILTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREKRVRTLMSFR 229

[Close]

BLAST of CmoCh03G000800 vs. NCBI nr
Match: XP_008460799.1 (PREDICTED: protein POLYCHOME [Cucumis melo] >KAA0053198.1 protein POLYCHOME [Cucumis melo var. makuwa] >TYK00145.1 protein POLYCHOME [Cucumis melo var. makuwa])

HSP 1 Score: 355.1 bits (910), Expect = 4.4e-94
Identity = 197/249 (79.12%), Postives = 211/249 (84.74%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGILDEKEMSTNLLRTPISRATTTTTDQQRPT----- 60
           MSE+RDRLERQVD+AEVFAR RSEGILDE+EM +NL+ TPI+RATTTT  QQRPT     
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 60

Query: 61  ----NLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTP 120
               NLRR+FGSPISGGIGRNRFLYR+PVLSREN  AGSSRRSRSRGRNSVLPIWYPRTP
Sbjct: 61  GGGANLRRTFGSPISGGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRTP 120

Query: 121 LRDITAVVRAIERTRARMKENKGPGSDISPAPSDERVLEAS-----------IFLVTPKA 180
           LRDITAVVRAIERTRAR++EN+G GSD SPAPSDER LE S           I L+TPK 
Sbjct: 121 LRDITAVVRAIERTRARLRENEGQGSDSSPAPSDERALEYSVSVASDHQEPIISLLTPKP 180

Query: 181 TIGKVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKKAEREK 230
           T+GKVPKILRGI N+N  GAETLTPQ KLLNSIDKVEKVVMEELQKLKRT SAKKAEREK
Sbjct: 181 TVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAEREK 240

[Close]

BLAST of CmoCh03G000800 vs. TAIR 10
Match: AT2G42260.1 (uv-b-insensitive 4 )

HSP 1 Score: 184.9 bits (468), Expect = 7.3e-47
Identity = 129/262 (49.24%), Postives = 156/262 (59.54%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGI-LDEKEMSTNLLRTPISRATTTTTD--------- 60
           M E+RDR+ERQVD+   F   RS GI LDE     NL  +P+ R  +  T          
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 61  -QQRPTNLRRSFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPR 120
              R   +R +FG   +GG  R +  +RSP   REN   G +RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSP-QGRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 121 TPLRDITAVVRAIERTRARMKENKGPGSDI-SPAPSDERVLEASI-----------FLVT 180
           TPLRDI+AVVRAIER RARM E  G G DI +P P    VL++ +            +VT
Sbjct: 121 TPLRDISAVVRAIERRRARMGE--GVGRDIETPTPQQLGVLDSLVPLSGAHLEHDYSMVT 180

Query: 181 PKATIG----------KVPKILRGITNQNVGGAETLTPQNKLLNSIDKVEKVVMEELQKL 230
           P  +IG          KV +IL  IT +N G  + LTP+ KLLNSIDKVEKVVMEE+QK+
Sbjct: 181 PGPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKM 240

[Close]

BLAST of CmoCh03G000800 vs. TAIR 10
Match: AT3G57860.1 (UV-B-insensitive 4-like )

HSP 1 Score: 123.6 bits (309), Expect = 2.0e-28
Identity = 104/254 (40.94%), Postives = 134/254 (52.76%), Query Frame = 0


Query: 1   MSESRDRLERQVDHAEVFARWRSEGI-LDEKEMSTNLLRTPISRATTTTTDQQRPTNLRR 60
           M E+RDR ER VD++ +FA  R  GI LDE +   +L+ +P++    +            
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLIESPVNPDIGSIGGTGGLVRGNF 60

Query: 61  SFGSPISGGIGRNRFLYRSPVLSRENAVAGSSRRSRSRGRNSVLPIWYPRTPLRDITAVV 120
           +   P +G  G   F  R P   REN    ++RR R  G   +LP WYPRTPLRDIT +V
Sbjct: 61  TTWRPGNGRGGHTPF--RLP-QGRENMPIVTARRGRGGG---LLPSWYPRTPLRDITHIV 120

Query: 121 RAIERTRARMKENKGPGSDIS-----PAPSDERVLEASI--------FLVTPKATIG--- 180
           RAIER R       G G D       P      VLE+ +         +VTP  ++G   
Sbjct: 121 RAIERRR-----GAGTGGDDGRVIEIPTHRQVGVLESPVPLSGEHKCSMVTPGPSVGFKR 180

Query: 181 -------KVPKILRGITNQNV-GGAETLTPQNKLLNSIDKVEKVVMEELQKLKRTSSAKK 230
                  KV K+L  IT +     A  +TP+ KLLNSIDKVEK+VM E+QKLK T  AK+
Sbjct: 181 SCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAEIQKLKSTPQAKR 240

The following BLAST results are available for this feature:

BLAST of CmoCh03G000800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48533	1.0e-45	49.24	Protein POLYCHOME OS=Arabidopsis thaliana OX=3702 GN=PYM PE=1 SV=1	[more]
Q9M2R1	2.8e-27	40.94	Protein GIGAS CELL1 OS=Arabidopsis thaliana OX=3702 GN=GIG1 PE=1 SV=1	[more]

BLAST of CmoCh03G000800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ESA2	8.0e-118	100.00	protein POLYCHOME-like OS=Cucurbita moschata OX=3662 GN=LOC111435520 PE=4 SV=1	[more]
A0A6J1HTB4	3.2e-114	97.82	protein POLYCHOME-like OS=Cucurbita maxima OX=3661 GN=LOC111467270 PE=4 SV=1	[more]
A0A5D3BM43	2.1e-94	79.12	Protein POLYCHOME OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G0...	[more]
A0A1S3CDA1	2.1e-94	79.12	protein POLYCHOME OS=Cucumis melo OX=3656 GN=LOC103499559 PE=4 SV=1	[more]
A0A0A0KY99	1.1e-93	78.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152290 PE=4 SV=1	[more]

BLAST of CmoCh03G000800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928675.1	1.7e-117	100.00	protein POLYCHOME-like [Cucurbita moschata] >KAG7033539.1 Protein POLYCHOME, par...	[more]
XP_023543597.1	3.5e-115	98.69	protein POLYCHOME-like [Cucurbita pepo subsp. pepo]	[more]
KAG6603234.1	3.5e-115	98.69	Protein POLYCHOME, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022967896.1	6.5e-114	97.82	protein POLYCHOME-like [Cucurbita maxima]	[more]
XP_008460799.1	4.4e-94	79.12	PREDICTED: protein POLYCHOME [Cucumis melo] >KAA0053198.1 protein POLYCHOME [Cuc...	[more]

BLAST of CmoCh03G000800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42260.1	7.3e-47	49.24	uv-b-insensitive 4	[more]
AT3G57860.1	2.0e-28	40.94	UV-B-insensitive 4-like	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35119:SF1	PROTEIN POLYCHOME	coord: 1..229
IPR034590	POLYCHOME/GIGAS CELL1	PANTHER	PTHR35119	PROTEIN POLYCHOME	coord: 1..229

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G000800.1	CmoCh03G000800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1904667	negative regulation of ubiquitin protein ligase activity
biological_process	GO:0051783	regulation of nuclear division
cellular_component	GO:0005634	nucleus