CmoCh02G013820 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G013820
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	cytochrome-c oxidases;electron carriers
Location	Cmo_Chr02: 8200138 .. 8202273 (+)
RNA-Seq Expression	CmoCh02G013820
Synteny	CmoCh02G013820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCCCTCGCACTGCAGACCCCCGCCAAGTCGTAGTCTATCATTCGCCTCCAACAGCGGCTGTTTTCGGAACAACGATTTCTCGTCTTCCCTGAATCCTCATCCAAATTCAAGTGAGTTTCAATCCATTCACCTATTTCTTTAGGATTTAGATACCAGGGATCCTTCTTTGATAAACTGATCTAGGATGGGAGTTGTAATGCTTTAATCATTTATTTTTTTCTGCTTATTCTGCTTCGCGAATGTTGTTGTGCTCGATGTAATCCTAATTCAAATGATTTTCCCCCTTAACTTTTTTTTTTTTTTTCATCTGCCTTGGGATTTTTAAGTTTTTACCTTCGTGTGCGATGTTCGGGGATTTAGATTTATGTGACACTATCGATTGAAATGCGCTATAACTTCCATAATTTACCGTTGAATCATCGATCTCGAAACGGAGAAAAGTTGATGGAATCGATTTTTTTGGTTTTTTCGTGTAGTTCTCATTTTTGTTGCCTATTTTGTGGAAATTAGTACATTTTTCGTTCATCAGTCGGTGGAGATGAGAGATTGCCTTTTCCTTTCAACTAGGGTTAGTCTAACAGAAACTGCTGGGAATTAGTTTTGAATTTCCTGGCTCATTATCGTATATGGGATTTATTAAATTAGTGAAGCAGATGACAATATGTGTAAGAATGGAGATTGATATCATTCTCGCTAGTTATGTATTGATAAGCGACACATATAAAATGTTTCAGTCGGGCTTAGTGTTGATAAAGATACATGAGAAAGTTTAGATATGATTTGAGATCATGTCATAGTTTTTGAATTTTGATATTTTCTGTAATTCATGAATACTTGGAATCAAGCTTTAAAATACAACCAGAAAACTGTAGTAAAAGGGTTGGTTGAACTCATTAAGTAACCCACTACCAACGCCCAAAGCCACCACCGTTTGGACTTTGTAGTGGAATTGGAGCTTGAGTTGAGGCTTACGCCTTTCAAGCCAAGGCCTCAAAGTGCAAGTACAAAGGCTTTTACACTCTACGTTCAGAGGCGTTAGCCTCTTTTTGATGTGTCGTGCTGGAGGTAAGCTCTATTTGGGCCAGAGCATTGATTCCCCATAACGAATAGACTAGCTCGAGATCTCAATTGCCTATCATGTGCTCGAAAAGGTCCCACAGTTCCTACTTAGATTGATTATATTCTTTGTATTGAACATAAAATGAACTTCCATATATGAATATATCATAGGGCGAAGCTGATGTACACCTTAAACGATTTATACCTTGCTTGGAATTGCGAGATGTTCCAAGCGACATTCTGTTATACTTTTAAGTCCCATATTGAGTGATTTTCTCTGTTGTTTGCATCATTTGTTGACTAATTGCTGTTTGAACCTTTGAAAATGAAGAATTGAGCAGTGGGTTCTGATCTATTTGATCCATGGAGTAGTGGGTTCTGATCTAAGCAGTACTTATGGGAACTCCATTGTTTCGCAGGATGTCTGAAGAACCATTTAGGCCACGTGAGAAACTTATTGAAAAGCAAAAATATTTCCAGAGCATCCACAAACACACGTATCTTAAGGGGCCAATGGATAAGGTGACCTCTGTTGCCATTCCACTTGCTTTGGCAGCTTCATCGTTGTATCTTATAGTAAGTTTATTTGTCTCTACACTGCTTGAGGAGATTATTTTTGTTTTCCATTGTGAATAAATTAGTACTGTTTCATGCAGGGACGGGGAATTTATAACATGTCACACGGGATTGGAAAGAAGGAATGATTTCAAAGATCCATCTTAATCTTTATCTAATAATTGCTTAGTTGCAGACTTGGTTACCAATTGGTTTGAATATCAATCTCAGATTCCTTGTTGTGCGTGTGGGATGGTTTGTCTCAGATTATCGTTTTTCCCCCTTTTTAGAAATTGTTTGGTTGAGTTTGCTTTCCAGTTTCCAGTGATCTGATTATTAAGGAGTGAGCAGCATATCCATAATAACTGTTTCTTTGTTCTTTATATAGTAGTTCAAATGTTCGTTAAAGTGATAGGTTCTAGGAAATTTGAATCTATACAAGATTATCCATTGAACGCAGATTTTATAGAGCGGATGAGATATTGAATGAGATATTATGGGTTGGAAAATAAAACACGAA

mRNA sequence

TTCCCCTCGCACTGCAGACCCCCGCCAAGTCGTAGTCTATCATTCGCCTCCAACAGCGGCTGTTTTCGGAACAACGATTTCTCGTCTTCCCTGAATCCTCATCCAAATTCAAGATGTCTGAAGAACCATTTAGGCCACGTGAGAAACTTATTGAAAAGCAAAAATATTTCCAGAGCATCCACAAACACACGTATCTTAAGGGGCCAATGGATAAGGTGACCTCTGTTGCCATTCCACTTGCTTTGGCAGCTTCATCGTTGTATCTTATAGGACGGGGAATTTATAACATGTCACACGGGATTGGAAAGAAGGAATGATTTCAAAGATCCATCTTAATCTTTATCTAATAATTGCTTAGTTGCAGACTTGGTTACCAATTGGTTTGAATATCAATCTCAGATTCCTTGTTGTGCGTGTGGGATGGTTTGTCTCAGATTATCGTTTTTCCCCCTTTTTAGAAATTGTTTGGTTGAGTTTGCTTTCCAGTTTCCAGTGATCTGATTATTAAGGAGTGAGCAGCATATCCATAATAACTGTTTCTTTGTTCTTTATATAGTAGTTCAAATGTTCGTTAAAGTGATAGGTTCTAGGAAATTTGAATCTATACAAGATTATCCATTGAACGCAGATTTTATAGAGCGGATGAGATATTGAATGAGATATTATGGGTTGGAAAATAAAACACGAA

Coding sequence (CDS)

ATGTCTGAAGAACCATTTAGGCCACGTGAGAAACTTATTGAAAAGCAAAAATATTTCCAGAGCATCCACAAACACACGTATCTTAAGGGGCCAATGGATAAGGTGACCTCTGTTGCCATTCCACTTGCTTTGGCAGCTTCATCGTTGTATCTTATAGGACGGGGAATTTATAACATGTCACACGGGATTGGAAAGAAGGAATGA

Protein sequence

MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPLALAASSLYLIGRGIYNMSHGIGKKE

Homology

[Close]

BLAST of CmoCh02G013820 vs. ExPASy TrEMBL
Match: A0A6J1H2F0 (uncharacterized protein LOC111459482 OS=Cucurbita moschata OX=3662 GN=LOC111459482 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.5e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPLALAASSLYLIGRGIYNMS 60
          MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPLALAASSLYLIGRGIYNMS
Sbjct: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPLALAASSLYLIGRGIYNMS 60

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 61 HGIGKKE 67

[Close]

BLAST of CmoCh02G013820 vs. ExPASy TrEMBL
Match: A0A6J1K1G6 (uncharacterized protein LOC111491550 OS=Cucurbita maxima OX=3661 GN=LOC111491550 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.9e-29
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPLALAASSLYLIGRGIYNMS 60
          MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIP+ALAASSLYLIGRGIYNMS
Sbjct: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMS 60

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 61 HGIGKKE 67

[Close]

BLAST of CmoCh02G013820 vs. ExPASy TrEMBL
Match: A0A6J1K6C6 (uncharacterized protein LOC111491558 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491558 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.6e-28
Identity = 62/67 (92.54%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPLALAASSLYLIGRGIYNMS 60
          M+E+PFRPREKLIE+QKYFQSIHKHTYLKGPMDK+TSVAIP+ALAASSLYLIGRGIYNMS
Sbjct: 1  MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 60

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 61 HGIGKKE 67

[Close]

BLAST of CmoCh02G013820 vs. ExPASy TrEMBL
Match: A0A6J1K8A8 (uncharacterized protein LOC111491558 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491558 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.6e-28
Identity = 62/67 (92.54%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPLALAASSLYLIGRGIYNMS 60
          M+E+PFRPREKLIE+QKYFQSIHKHTYLKGPMDK+TSVAIP+ALAASSLYLIGRGIYNMS
Sbjct: 3  MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 62

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 63 HGIGKKE 69

[Close]

BLAST of CmoCh02G013820 vs. ExPASy TrEMBL
Match: A0A6J1H2N1 (uncharacterized protein LOC111459140 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459140 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.6e-28
Identity = 62/67 (92.54%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPLALAASSLYLIGRGIYNMS 60
          M+E+PFRPREKLIE+QKYFQSIHKHTYLKGPMDK+TSVAIP+ALAASSLYLIGRGIYNMS
Sbjct: 3  MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 62

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 63 HGIGKKE 69

[Close]

BLAST of CmoCh02G013820 vs. NCBI nr
Match: KAG7035952.1 (hypothetical protein SDJN02_02752, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.7 bits (343), Expect = 7.2e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1   MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPLALAASSLYLIGRGIYNMS 60
           MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPLALAASSLYLIGRGIYNMS
Sbjct: 40  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPLALAASSLYLIGRGIYNMS 99

Query: 61  HGIGKKE 68
           HGIGKKE
Sbjct: 100 HGIGKKE 106

[Close]

BLAST of CmoCh02G013820 vs. NCBI nr
Match: XP_022958178.1 (uncharacterized protein LOC111459482 [Cucurbita moschata])

HSP 1 Score: 136.7 bits (343), Expect = 7.2e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPLALAASSLYLIGRGIYNMS 60
          MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPLALAASSLYLIGRGIYNMS
Sbjct: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPLALAASSLYLIGRGIYNMS 60

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 61 HGIGKKE 67

[Close]

BLAST of CmoCh02G013820 vs. NCBI nr
Match: XP_022996277.1 (uncharacterized protein LOC111491550 [Cucurbita maxima])

HSP 1 Score: 136.0 bits (341), Expect = 1.2e-28
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPLALAASSLYLIGRGIYNMS 60
          MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIP+ALAASSLYLIGRGIYNMS
Sbjct: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMS 60

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 61 HGIGKKE 67

[Close]

BLAST of CmoCh02G013820 vs. NCBI nr
Match: KAG6606002.1 (hypothetical protein SDJN03_03319, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.6 bits (340), Expect = 1.6e-28
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1   MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPLALAASSLYLIGRGIYNMS 60
           MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPLALAASSLYLIGRGIYNM+
Sbjct: 47  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPLALAASSLYLIGRGIYNMA 106

Query: 61  HGIGKKE 68
           HGIGKKE
Sbjct: 107 HGIGKKE 113

[Close]

BLAST of CmoCh02G013820 vs. NCBI nr
Match: XP_023532117.1 (uncharacterized protein LOC111794377 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.8 bits (338), Expect = 2.7e-28
Identity = 65/67 (97.01%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPLALAASSLYLIGRGIYNMS 60
          MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIP+ALAA+SLYLIGRGIYNMS
Sbjct: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAATSLYLIGRGIYNMS 60

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 61 HGIGKKE 67

[Close]

BLAST of CmoCh02G013820 vs. TAIR 10
Match: AT4G21105.1 (cytochrome-c oxidases;electron carriers )

HSP 1 Score: 115.9 bits (289), Expect = 1.2e-26
Identity = 54/67 (80.60%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPLALAASSLYLIGRGIYNMS 60
          ++E PFRPREKL+EKQ+ FQSI +HTYLKGPMDK+TSVAIP+ALAASSLY+IG GIYNMS
Sbjct: 2  LTETPFRPREKLLEKQRLFQSIQRHTYLKGPMDKITSVAIPIALAASSLYMIGTGIYNMS 61

Query: 61 HGIGKKE 68
          +GIGKKE
Sbjct: 62 NGIGKKE 68

[Close]

BLAST of CmoCh02G013820 vs. TAIR 10
Match: AT4G21105.2 (cytochrome-c oxidases;electron carriers )

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-12
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIP 42
          ++E PFRPREKL+EKQ+ FQSI +HTYLKGPMDK+TS+ IP
Sbjct: 2  LTETPFRPREKLLEKQRLFQSIQRHTYLKGPMDKITSLFIP 42

The following BLAST results are available for this feature:

BLAST of CmoCh02G013820 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh02G013820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H2F0	3.5e-29	100.00	uncharacterized protein LOC111459482 OS=Cucurbita moschata OX=3662 GN=LOC1114594...	[more]
A0A6J1K1G6	5.9e-29	98.51	uncharacterized protein LOC111491550 OS=Cucurbita maxima OX=3661 GN=LOC111491550...	[more]
A0A6J1K6C6	8.6e-28	92.54	uncharacterized protein LOC111491558 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1K8A8	8.6e-28	92.54	uncharacterized protein LOC111491558 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1H2N1	8.6e-28	92.54	uncharacterized protein LOC111459140 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CmoCh02G013820 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035952.1	7.2e-29	100.00	hypothetical protein SDJN02_02752, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022958178.1	7.2e-29	100.00	uncharacterized protein LOC111459482 [Cucurbita moschata]	[more]
XP_022996277.1	1.2e-28	98.51	uncharacterized protein LOC111491550 [Cucurbita maxima]	[more]
KAG6606002.1	1.6e-28	98.51	hypothetical protein SDJN03_03319, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023532117.1	2.7e-28	97.01	uncharacterized protein LOC111794377 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh02G013820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21105.1	1.2e-26	80.60	cytochrome-c oxidases;electron carriers	[more]
AT4G21105.2	1.7e-12	73.17	cytochrome-c oxidases;electron carriers	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039297	Cytochrome c oxidase subunit VII	PFAM	PF02238	COX7a	coord: 10..62 e-value: 6.8E-17 score: 61.6
IPR039296	Predicted cytochrome c oxidase subunit VII	PANTHER	PTHR35308	CYTOCHROME C OXIDASE SUBUNIT 7	coord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G013820.1	CmoCh02G013820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane