CmoCh02G005390 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G005390
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionVQ domain-containing protein
LocationCmo_Chr02: 3063936 .. 3064211 (-)
RNA-Seq ExpressionCmoCh02G005390
SyntenyCmoCh02G005390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACCTCACTCCTACTCTTCTTCTTCTTCTTCCTTTTCCTTTTACTACTCCGACCCCGACGGAGTTCACAAGGCATCGTCGAGGTCGCCGAAGAAGGCGGTTGCACCTCCGCCTCCGATGCCTCCGAGGGTTTACAAAGTGGAGCCCATCGAGTTTCGAGATGTCGTTCAGAAGCTAACTTCACCTCCCGAGTATCTAGATCCTCGCCTTAAAGCCATGCCGGCTCCACGCCCAAATCTCTCCAATCCGCCGCCGTGCTCTTCCCGCCGCTGA

mRNA sequence

ATGGAACCTCACTCCTACTCTTCTTCTTCTTCTTCCTTTTCCTTTTACTACTCCGACCCCGACGGAGTTCACAAGGCATCGTCGAGGTCGCCGAAGAAGGCGGTTGCACCTCCGCCTCCGATGCCTCCGAGGGTTTACAAAGTGGAGCCCATCGAGTTTCGAGATGTCGTTCAGAAGCTAACTTCACCTCCCGAGTATCTAGATCCTCGCCTTAAAGCCATGCCGGCTCCACGCCCAAATCTCTCCAATCCGCCGCCGTGCTCTTCCCGCCGCTGA

Coding sequence (CDS)

ATGGAACCTCACTCCTACTCTTCTTCTTCTTCTTCCTTTTCCTTTTACTACTCCGACCCCGACGGAGTTCACAAGGCATCGTCGAGGTCGCCGAAGAAGGCGGTTGCACCTCCGCCTCCGATGCCTCCGAGGGTTTACAAAGTGGAGCCCATCGAGTTTCGAGATGTCGTTCAGAAGCTAACTTCACCTCCCGAGTATCTAGATCCTCGCCTTAAAGCCATGCCGGCTCCACGCCCAAATCTCTCCAATCCGCCGCCGTGCTCTTCCCGCCGCTGA

Protein sequence

MEPHSYSSSSSSFSFYYSDPDGVHKASSRSPKKAVAPPPPMPPRVYKVEPIEFRDVVQKLTSPPEYLDPRLKAMPAPRPNLSNPPPCSSRR
Homology
BLAST of CmoCh02G005390 vs. ExPASy TrEMBL
Match: A0A5A7TW54 (VQ motif-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00880 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.3e-14
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 0

Query: 1  MEPHSYSSSSSSFSFYYSDPDGVHKASSRSPKKAVAPPPPMPPRVYKVEPIEFRDVVQKL 60
          MEPH       SFSFYY+D      +  ++ KKAVAPP P PP+VYKV+PI FRDVVQKL
Sbjct: 1  MEPH-------SFSFYYTDQGA---SVQKTGKKAVAPPRPTPPQVYKVDPINFRDVVQKL 60

Query: 61 TSPPEYLDPRLKAMPAPRPNLSN 84
          T+ PE+ D RL+AMP PRPN+++
Sbjct: 61 TAAPEFQDRRLQAMPPPRPNVAD 73

BLAST of CmoCh02G005390 vs. ExPASy TrEMBL
Match: A0A0A0LPS3 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G271490 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.4e-10
Identity = 35/55 (63.64%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 29 RSPKKAVAPPPPMPPRVYKVEPIEFRDVVQKLTSPPEYLDPRLKAMPAPRPNLSN 84
          ++ KK VAPP P PP+VYKV+PI FRDVVQKLT+ P++ D RL+AMP PRP+L++
Sbjct: 9  KTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRRLQAMPPPRPDLAD 63

BLAST of CmoCh02G005390 vs. ExPASy TrEMBL
Match: A0A6J1D7B4 (VQ motif-containing protein 29 OS=Momordica charantia OX=3673 GN=LOC111017949 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.4e-10
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 0

Query: 1  MEPHSYSSSSSSFSFYYSDPDGVHKASSRSPKKAVAPPPPMPPRVYKVEPIEFRDVVQKL 60
          MEPHS SSS                 + +   +AVAP PP PP++YKV P++FRDVVQKL
Sbjct: 1  MEPHSSSSS----------------PAVKPWNRAVAPLPPTPPQIYKVNPVDFRDVVQKL 60

Query: 61 TSPPEYLDPRLKAMPAPRPNLSNPPPCSS 90
          T+ PE+ D RL+AMPAPRP   +PPP S+
Sbjct: 61 TAAPEFQDRRLQAMPAPRP---SPPPGSA 70

BLAST of CmoCh02G005390 vs. ExPASy TrEMBL
Match: A0A7J6FZD7 (VQ domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_017316 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 50/93 (53.76%), Postives = 63/93 (67.74%), Query Frame = 0

Query: 1  MEPHSYSSSSSSFS---FYYSDPDGVHKASSRSP-KKAVAPPPPMPPRVYKVEPIEFRDV 60
          ME +SYSSSSS+ S   +Y S    V KA++  P KK VAP PP PPRVY+V+PI FRD+
Sbjct: 1  MEAYSYSSSSSNTSKVPYYSSSLHSVKKAATAKPWKKLVAPLPPNPPRVYRVDPINFRDL 60

Query: 61 VQKLTSPPEY-LDPRLKAMPAPRPNLSN--PPP 87
          VQKLT+ PE+ LDP  +  P P+  L +  PPP
Sbjct: 61 VQKLTAAPEFQLDPPQQPQPQPQLRLQSLAPPP 93

BLAST of CmoCh02G005390 vs. ExPASy TrEMBL
Match: A0A803PEA2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.2e-09
Identity = 49/91 (53.85%), Postives = 60/91 (65.93%), Query Frame = 0

Query: 1  MEPHSYSSSSSSFS---FYYSDPDGVHKASSRSP-KKAVAPPPPMPPRVYKVEPIEFRDV 60
          ME +SYSSSSS+ S   +Y S    V KA++  P KK VAP PP PPRVY+V+PI FRD+
Sbjct: 1  MEAYSYSSSSSNTSKVPYYSSSLHSVKKAATAKPWKKLVAPLPPNPPRVYRVDPINFRDL 60

Query: 61 VQKLTSPPEY-LDPRLKAMPAPRPNLSNPPP 87
          VQKLT+ PE+ LDP  +  P  R     PPP
Sbjct: 61 VQKLTAAPEFQLDPPQQPQPQLRLQSLAPPP 91

BLAST of CmoCh02G005390 vs. NCBI nr
Match: KAG6605217.1 (hypothetical protein SDJN03_02534, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 180.3 bits (456), Expect = 7.7e-42
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0

Query: 1  MEPHSYSSSSSSFSFYYSDPDGVHKASSRSPKKAVAPPPPMPPRVYKVEPIEFRDVVQKL 60
          MEPHSYSSSSSSFSFYYSDPDGVHKASSRSPKKAVAPPPPMPPRVYKVEPIEFRDVVQKL
Sbjct: 1  MEPHSYSSSSSSFSFYYSDPDGVHKASSRSPKKAVAPPPPMPPRVYKVEPIEFRDVVQKL 60

Query: 61 TSPPEYLDPRLKAMPAPRPNLSNPPPCSSRR 92
          TSPPEYLDPRLKAMPAPRPNLSNPPPCSSRR
Sbjct: 61 TSPPEYLDPRLKAMPAPRPNLSNPPPCSSRR 91

BLAST of CmoCh02G005390 vs. NCBI nr
Match: KAA0045761.1 (VQ motif-containing protein 29 [Cucumis melo var. makuwa] >TYJ99521.1 VQ motif-containing protein 29 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 1.5e-13
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 0

Query: 1  MEPHSYSSSSSSFSFYYSDPDGVHKASSRSPKKAVAPPPPMPPRVYKVEPIEFRDVVQKL 60
          MEPH       SFSFYY+D      +  ++ KKAVAPP P PP+VYKV+PI FRDVVQKL
Sbjct: 1  MEPH-------SFSFYYTDQGA---SVQKTGKKAVAPPRPTPPQVYKVDPINFRDVVQKL 60

Query: 61 TSPPEYLDPRLKAMPAPRPNLSN 84
          T+ PE+ D RL+AMP PRPN+++
Sbjct: 61 TAAPEFQDRRLQAMPPPRPNVAD 73

BLAST of CmoCh02G005390 vs. NCBI nr
Match: KAE8651906.1 (hypothetical protein Csa_006780 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 6.4e-12
Identity = 46/83 (55.42%), Postives = 57/83 (68.67%), Query Frame = 0

Query: 1  MEPHSYSSSSSSFSFYYSDPDGVHKASSRSPKKAVAPPPPMPPRVYKVEPIEFRDVVQKL 60
          MEPH       SFSFYY D         ++ KK VAPP P PP+VYKV+PI FRDVVQKL
Sbjct: 1  MEPH-------SFSFYYMDQGA---PVQKTGKKPVAPPRPSPPQVYKVDPINFRDVVQKL 60

Query: 61 TSPPEYLDPRLKAMPAPRPNLSN 84
          T+ P++ D RL+AMP PRP+L++
Sbjct: 61 TAAPQFQDRRLQAMPPPRPDLAD 73

BLAST of CmoCh02G005390 vs. NCBI nr
Match: XP_022149539.1 (VQ motif-containing protein 29 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-09
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 0

Query: 1  MEPHSYSSSSSSFSFYYSDPDGVHKASSRSPKKAVAPPPPMPPRVYKVEPIEFRDVVQKL 60
          MEPHS SSS                 + +   +AVAP PP PP++YKV P++FRDVVQKL
Sbjct: 1  MEPHSSSSS----------------PAVKPWNRAVAPLPPTPPQIYKVNPVDFRDVVQKL 60

Query: 61 TSPPEYLDPRLKAMPAPRPNLSNPPPCSS 90
          T+ PE+ D RL+AMPAPRP   +PPP S+
Sbjct: 61 TAAPEFQDRRLQAMPAPRP---SPPPGSA 70

BLAST of CmoCh02G005390 vs. NCBI nr
Match: KAF4375170.1 (hypothetical protein F8388_017316 [Cannabis sativa] >KAF4402061.1 hypothetical protein G4B88_017573 [Cannabis sativa])

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-09
Identity = 50/93 (53.76%), Postives = 63/93 (67.74%), Query Frame = 0

Query: 1  MEPHSYSSSSSSFS---FYYSDPDGVHKASSRSP-KKAVAPPPPMPPRVYKVEPIEFRDV 60
          ME +SYSSSSS+ S   +Y S    V KA++  P KK VAP PP PPRVY+V+PI FRD+
Sbjct: 1  MEAYSYSSSSSNTSKVPYYSSSLHSVKKAATAKPWKKLVAPLPPNPPRVYRVDPINFRDL 60

Query: 61 VQKLTSPPEY-LDPRLKAMPAPRPNLSN--PPP 87
          VQKLT+ PE+ LDP  +  P P+  L +  PPP
Sbjct: 61 VQKLTAAPEFQLDPPQQPQPQPQLRLQSLAPPP 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TW547.3e-1457.83VQ motif-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A0A0LPS36.4e-1063.64VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G271490 PE=4 SV=... [more]
A0A6J1D7B48.4e-1050.56VQ motif-containing protein 29 OS=Momordica charantia OX=3673 GN=LOC111017949 PE... [more]
A0A7J6FZD71.1e-0953.76VQ domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_017316 PE=4 SV=... [more]
A0A803PEA23.2e-0953.85Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6605217.17.7e-42100.00hypothetical protein SDJN03_02534, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0045761.11.5e-1357.83VQ motif-containing protein 29 [Cucumis melo var. makuwa] >TYJ99521.1 VQ motif-c... [more]
KAE8651906.16.4e-1255.42hypothetical protein Csa_006780 [Cucumis sativus][more]
XP_022149539.11.7e-0950.56VQ motif-containing protein 29 [Momordica charantia][more]
KAF4375170.12.3e-0953.76hypothetical protein F8388_017316 [Cannabis sativa] >KAF4402061.1 hypothetical p... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 40..61
e-value: 8.4E-8
score: 31.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..46
NoneNo IPR availablePANTHERPTHR34794:SF1EXPRESSED PROTEINcoord: 5..84
IPR039610VQ motif-containing protein 29PANTHERPTHR34794EXPRESSED PROTEINcoord: 5..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G005390.1CmoCh02G005390.1mRNA