CmoCh02G005390 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAACCTCACTCCTACTCTTCTTCTTCTTCTTCCTTTTCCTTTTACTACTCCGACCCCGACGGAGTTCACAAGGCATCGTCGAGGTCGCCGAAGAAGGCGGTTGCACCTCCGCCTCCGATGCCTCCGAGGGTTTACAAAGTGGAGCCCATCGAGTTTCGAGATGTCGTTCAGAAGCTAACTTCACCTCCCGAGTATCTAGATCCTCGCCTTAAAGCCATGCCGGCTCCACGCCCAAATCTCTCCAATCCGCCGCCGTGCTCTTCCCGCCGCTGA ATGGAACCTCACTCCTACTCTTCTTCTTCTTCTTCCTTTTCCTTTTACTACTCCGACCCCGACGGAGTTCACAAGGCATCGTCGAGGTCGCCGAAGAAGGCGGTTGCACCTCCGCCTCCGATGCCTCCGAGGGTTTACAAAGTGGAGCCCATCGAGTTTCGAGATGTCGTTCAGAAGCTAACTTCACCTCCCGAGTATCTAGATCCTCGCCTTAAAGCCATGCCGGCTCCACGCCCAAATCTCTCCAATCCGCCGCCGTGCTCTTCCCGCCGCTGA ATGGAACCTCACTCCTACTCTTCTTCTTCTTCTTCCTTTTCCTTTTACTACTCCGACCCCGACGGAGTTCACAAGGCATCGTCGAGGTCGCCGAAGAAGGCGGTTGCACCTCCGCCTCCGATGCCTCCGAGGGTTTACAAAGTGGAGCCCATCGAGTTTCGAGATGTCGTTCAGAAGCTAACTTCACCTCCCGAGTATCTAGATCCTCGCCTTAAAGCCATGCCGGCTCCACGCCCAAATCTCTCCAATCCGCCGCCGTGCTCTTCCCGCCGCTGA MEPHSYSSSSSSFSFYYSDPDGVHKASSRSPKKAVAPPPPMPPRVYKVEPIEFRDVVQKLTSPPEYLDPRLKAMPAPRPNLSNPPPCSSRR Homology
BLAST of CmoCh02G005390 vs. ExPASy TrEMBL
Match: A0A5A7TW54 (VQ motif-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00880 PE=4 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 7.3e-14 Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 0
BLAST of CmoCh02G005390 vs. ExPASy TrEMBL
Match: A0A0A0LPS3 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G271490 PE=4 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 6.4e-10 Identity = 35/55 (63.64%), Postives = 46/55 (83.64%), Query Frame = 0
BLAST of CmoCh02G005390 vs. ExPASy TrEMBL
Match: A0A6J1D7B4 (VQ motif-containing protein 29 OS=Momordica charantia OX=3673 GN=LOC111017949 PE=4 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 8.4e-10 Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 0
BLAST of CmoCh02G005390 vs. ExPASy TrEMBL
Match: A0A7J6FZD7 (VQ domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_017316 PE=4 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09 Identity = 50/93 (53.76%), Postives = 63/93 (67.74%), Query Frame = 0
BLAST of CmoCh02G005390 vs. ExPASy TrEMBL
Match: A0A803PEA2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 3.2e-09 Identity = 49/91 (53.85%), Postives = 60/91 (65.93%), Query Frame = 0
BLAST of CmoCh02G005390 vs. NCBI nr
Match: KAG6605217.1 (hypothetical protein SDJN03_02534, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 180.3 bits (456), Expect = 7.7e-42 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
BLAST of CmoCh02G005390 vs. NCBI nr
Match: KAA0045761.1 (VQ motif-containing protein 29 [Cucumis melo var. makuwa] >TYJ99521.1 VQ motif-containing protein 29 [Cucumis melo var. makuwa]) HSP 1 Score: 86.3 bits (212), Expect = 1.5e-13 Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 0
BLAST of CmoCh02G005390 vs. NCBI nr
Match: KAE8651906.1 (hypothetical protein Csa_006780 [Cucumis sativus]) HSP 1 Score: 80.9 bits (198), Expect = 6.4e-12 Identity = 46/83 (55.42%), Postives = 57/83 (68.67%), Query Frame = 0
BLAST of CmoCh02G005390 vs. NCBI nr
Match: XP_022149539.1 (VQ motif-containing protein 29 [Momordica charantia]) HSP 1 Score: 72.8 bits (177), Expect = 1.7e-09 Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 0
BLAST of CmoCh02G005390 vs. NCBI nr
Match: KAF4375170.1 (hypothetical protein F8388_017316 [Cannabis sativa] >KAF4402061.1 hypothetical protein G4B88_017573 [Cannabis sativa]) HSP 1 Score: 72.4 bits (176), Expect = 2.3e-09 Identity = 50/93 (53.76%), Postives = 63/93 (67.74%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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