CmoCh02G003570 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh02G003570
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr02: 1778573 .. 1779982 (+)
RNA-Seq ExpressionCmoCh02G003570
SyntenyCmoCh02G003570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTACATTCGTTGATCTCATCTCCCAATTGAATGAGTCCTGAAATAAGATGTATTTGTTAGACATGGCCTAATAAACTAGATAGTACCATTCTTATATATGCTCTTTTGTAGGTGGAGATAAAAGAAATGCCTCTCCCAATGATGTATAGAGAACTTCATATTCTAATTTTAGAAAATGAAAACAATTCATTCCATGCAAGGTCTTCTCTTTTTTTTCTTCTTTTGCATAAGGGTTATTTACTTTTCTTTTCTGTTATAAACACATATTATAGCCATTACACTTCATGGACTCGACTTGAAAATAGAAGTATTGATAATCTTCATTTTTATAGTGACACCTCTCGGGGCCTAGACCTTCCCAAATACATTTTGTTTTGTACATAAGGTACTCAACTATGCACAACTAATTGTTTTTAGTTCTCATATAAGCATTTCAAATCCTCTTTGATTCTTCCATTAGCAACATTATCACTACTCAAGCGGTTCGTATCTATTGGTGCTCTACGAAACAGGAAGTACGTTTTCTACATGACATGTCTTCCATAAGCAACAATTTTTATCTGGTGTACCAACACCGTACTAAACCTTGAAAGTTGTCGGAGTAAGCTTGCACCATCTTTGATGTTTTTATATTCTTCAGTTAACCGACTCTTGAGAATGATGATATTTCAAAAGAAATACTCTTGGAAATGATTATTCTGTATCTTTATTAATTTTTGAAGAAAAGATGCTTGATTCCTATGTAGATGCTTATTCGATTTAAAAAGAATCTTATGTAATATGCCAATATCCACTCATTATGAGTAAACAATGTAGGTCAGCTTTCATGTGAACTTCACATAGGCTTGTTTGAAACACACTAAAAATAAAAATAAAAAAATAAAACAAGAATACAAAAGTAGGTTCTCACAATCTGCATCAAGAACAGTAGATTTTTTTGCTACTTCTGACTGTGATCTACCTTACTGTCTCATTCAGGTTCATCATTTGTGGGACTCCAATAGCTGTACTGATGTATCACAAAGGCAAAGACTTAGCTGCCATGTTCGGTTTTGTTCTATTTTCAGCCAGATACCTTAGAATTTTTTTTAAAAAGTTAGATTTATATTCAATACATATAGACAGAAATAATCTATGCCATTAAATGGGTCTCCTGTTGTATGTTGACAAGGAAAAAAAAAAAAAAAAAAAAGGGAAATGGTTTTCATGTTTCAGGCATATCTCTAACAAAAGTCATGAACTTGCTTATGCTACGTGCTTAGCATAACTAACAAGTTTTTACTTTGGCCTCAATTTTCAGCTAAAATTGGTCCTTTACTGGCTGATTTTCCCAAGAAGTTTGGTGACTTTGTTTACCCAATATTATTTCCTGAGTTCCTGAAGATAATGGGAGACAGGACCATGTGA

mRNA sequence

ATGGTGGAGATAAAAGAAATGCCTCTCCCAATGATGTATAGAGAACTTCATATTCTAATTTTAGAAAATGAAAACAATTCATTCCATGCAAGGTTCATCATTTGTGGGACTCCAATAGCTGTACTGATGTATCACAAAGCTAAAATTGGTCCTTTACTGGCTGATTTTCCCAAGAAGTTTGGTGACTTTGTTTACCCAATATTATTTCCTGAGTTCCTGAAGATAATGGGAGACAGGACCATGTGA

Coding sequence (CDS)

ATGGTGGAGATAAAAGAAATGCCTCTCCCAATGATGTATAGAGAACTTCATATTCTAATTTTAGAAAATGAAAACAATTCATTCCATGCAAGGTTCATCATTTGTGGGACTCCAATAGCTGTACTGATGTATCACAAAGCTAAAATTGGTCCTTTACTGGCTGATTTTCCCAAGAAGTTTGGTGACTTTGTTTACCCAATATTATTTCCTGAGTTCCTGAAGATAATGGGAGACAGGACCATGTGA

Protein sequence

MVEIKEMPLPMMYRELHILILENENNSFHARFIICGTPIAVLMYHKAKIGPLLADFPKKFGDFVYPILFPEFLKIMGDRTM
Homology
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BLAST of CmoCh02G003570 vs. NCBI nr
Match: KAG7035049.1 (hypothetical protein SDJN02_01843 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108.2 bits (269), Expect = 3.3e-20
Identity = 52/69 (75.36%), Postives = 57/69 (82.61%), Query Frame = 0 

Query: 21 LENENNSFHARFIICGTPIAVLMYHK--------AKIGPLLADFPKKFGDFVYPILFPEF 80
          + N+++ +  RFIICGTPIAVLMYHK        AKIGPLLADFPKKFGDFVYPILFPEF
Sbjct: 7  VRNKSDDYCLRFIICGTPIAVLMYHKGKDLAAMFAKIGPLLADFPKKFGDFVYPILFPEF 66

Query: 81 LKIMGDRTM 82
          LKIMGDRTM
Sbjct: 67 LKIMGDRTM 75

The following BLAST results are available for this feature:
BLAST of CmoCh02G003570 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G003570 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh02G003570 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7035049.13.3e-2075.36hypothetical protein SDJN02_01843 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of CmoCh02G003570 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G003570.1CmoCh02G003570.1mRNA