CmoCh01G020680 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G020680
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionSmall nuclear ribonucleoprotein Sm D3
LocationCmo_Chr01: 14420602 .. 14423961 (+)
RNA-Seq ExpressionCmoCh01G020680
SyntenyCmoCh01G020680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGTTTGCCTTATAATTGGCTTTGCCGGGTCGCGAGTTCAAGCCTCAGAGAAGCTGAGAAGAGCGTTAGGGTTTTAGAGGAAGATTTGAGATTTTCAGAGCGGAGCCATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCCGGCCACGTTGTGTCCGTGGAGCTTAAAAGCGGGGAGCTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGTCAACTCGAAAACATCACCTACACTGCTAAGGTACGCCCCTCTTCGTTTTTCTGGTTTTAGGGTTTACTTCATTTCGCCCATTCTGCTGCTTTTTCTCTAAAGTTTACCACTTCAGTATACTTGAACTTCGTATAAACCCTAATTTGGTGTAGTTTCCTGGGATTCTAACTTAAAACGCTGCGATCTCTTGTTTTTTGTAGCGTGAATAATGAAATTAACATGTTTGTCGCGCCAGAAAATTTTGGGGAATTGAAAACTTTCTCAATGTCGTTAATTTCAACGTATAATGGGAATAACTATTGCATTTAAACCCCCACAGACCTTGTTGGAGTGTCCCGAACCTCAAATTGTATCAACTTTCTAATGAGACTAAAAGTCGGCAAACATGAAAAGAGTGTATTCATTGATCAGCACTGGCCGCCTGAATCTCCACACCAGGTTCAATGGTGGTGGAGGTAATTTACTTCACTACATCTGCGGAGCTGAATAGGTCAATAACTCGCTAGTGGGCACGAAGCTCAAATCTGCCCCATGTGTTGGATCCTTCACCTCATGAGGGTTTTCTGGTTGTGATGTGAAGACTCTTCGTGGCCTGTCCTTGGCACCACGACGAATCAAGTCGACAAAAACTTTCACAAGGTTCTTAACCTTTTTATTAGAGGAGGGAGTAATCCAGATCTTTGGTTTTTCTCTTGTGTATCTTCTAGGCTTGGCTTAGTCTGTTTCATTGCTACGTATGCCATGCTTTTGGTTATCCTGTGTGAGATCCCATATCAGTCGGAGAGGAGAAAGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCTCTAGCAGACACGTTTTTAAAACCTTGAGGGAAAGTCCGAAAGGGAAAGCCAAAGAGGACAATATCTGTTAGCGGTGGACCTGGGTCGTTAGATCTTGAATCTCCGAAACAAATCTGGGTAGGTGGGTGAGAAGGAGATCTCTAGGGTTGAATTTCTAGCTCCCCTCCCTAAAAACCAAAAGTCCGTGATCTTGAAGGCAACATTGGGATTGATTAAATCAACTAGGGACAAATGTTAACTGTGCACATTGGTTACTCTGCTGGTGCGTTGTTTAATTGCAACTTTCTTGCTATGCAATTCACCTTCACCAAATCAAATAGGAGAGATTGGAATGATCGTAGATTCATATTGATTAACTGGAAAGAAAATGGTTTCTATGAATTTTTCAAATGCATTAAGTTTCACTGATTTTCTTTGTCTAATATATTAGTGTTTTGCTTATGTTATAGTTGTCGTTCAATGTCGTTGAGATTATCTTTTCCCTTTGCTTGCATGTATATGGTTGAGAGTCGTGTTCTTCGGGTTCACTTGATATGTTTTCTTCTATAGGATGGGAAGGTCTCTCAGCTTGAGCACGTTTTTATCAGAGGAAGCAAAGTCAGGTATCTGTACTGTCTCTTGTATTATAGACTATCCAATCACTTTCTTAGTTCTTATTCCATGGGATTTTTTTAGGATTTGGTTGGCATGCTGACATCTATTAATGCATATAGGTTCATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAAAATTAAGGTATTTCAACTTAATTTCTATGATTTTAATTCTGATGGAATCCTTGCTTTCTTTCTTTCTCTCCTAACCCATGCTTTCTGGATCTTGAAGGGTAAGGGTGCCTCACTTGGTGTTGGAAGGGGCAGGGCTGTTGCTATGCGAGCTAAGGTATGTTGAGGATTATTGGGATTGGGAGTGTCCCACATTGGTTAATTTAGTGGAAGATCATGGGTTTATAAGTGAGGAATACTATCTTCATTGGTATGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGATTCCTAACATGGTATCAGAGCCATGCCCTAAACCTAACCATGCCAATAGAATCCTCAAATATCGAACAAAGAATGGCGAGCCTCGAAGGTGTAGTCAAAAGTGACTAAAGTGTCGAACAAATGGTGTACTTTGTTCGAGGGCTCCAGAGAAGGAGTCGAGCCTCAATTAAGGGGAGGCTATTCGAGGCTCCATAAGCCTCAGGGGAGGCTTATAGTGTGCTTTGTTCGAGGGGAGGATTGTTGAGGATTATTGGGATTGGGAGTGTCCCACATTGGTTAATTTAGTGGAAGATCATGGGTTTATAAGTGAGGAATACTATCTTCATTGGTATGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGATTCCTAACAAGGTAGGCCCCATTGGATCTTAATTTTAGTATGGTGATAATTTATTCCATGAAATACGTTTATAATCAGTACGAACATCCGCATACATGCTTGTGTGCAATTTTCCCATGTATGAGAGAAGGATATGATGGCTGCTTGTGTGCAAGAAGTATAGGATTTACTTTAGTTGACAGGTTTCTGATTCATCCCTTGGAAGATATTAGTGAATATTTTATGGCACTACGAACTTCGTAATTCTCAAATTATGAGGGAAAACAAGTAGAGTGCTTCACAAATTATTGTGTACATTTACAGATTTCCAAAAATTAACACTGCGGTGAACTCTATATTCTCTAGGCTCAAGCTGCTGGGCGTGGAGGTGCGACTGGTCGGGGTGCGGTGCCATCTGCCCGAAGGTGATGAAACCATGAATACAGTTTGTTATGTCCTCGGTTCAAGCCTCGATAGCCATTGGAATGTTGACCATCAGATTGACATCCCCAACACCGAAGAAATACGCGTTATTCCATTTTGTTGAGAAAGTGGGCTTATTGATGACCATAACCTTCAACTTCGTTAGAAACTTTTTGCTTCAGCCCATTTTATGTTGAGATTGAACAATTCATTACCCCATGTCATCTTTGTTATGTGTATGTAGTATCGAACGTTCTTTTGCATCTTTCAATAGATAACACTGTAAGAGTATTATGGTCTTTGTGCTATCCAATTCTTCTACTCGGCCTCAGGGGAGGCTTATAGTGTGCTTTGTTCGAGGGGAGGATTGTTG

mRNA sequence

TCGTTTGCCTTATAATTGGCTTTGCCGGGTCGCGAGTTCAAGCCTCAGAGAAGCTGAGAAGAGCGTTAGGGTTTTAGAGGAAGATTTGAGATTTTCAGAGCGGAGCCATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCCGGCCACGTTGTGTCCGTGGAGCTTAAAAGCGGGGAGCTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGTCAACTCGAAAACATCACCTACACTGCTAAGGATGGGAAGGTCTCTCAGCTTGAGCACGTTTTTATCAGAGGAAGCAAAGTCAGGTTCATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAAAATTAAGGCTCAAGCTGCTGGGCGTGGAGGTGCGACTGGTCGGGGTGCGGTGCCATCTGCCCGAAGGTGATGAAACCATGAATACAGTTTGTTATGTCCTCGGTTCAAGCCTCGATAGCCATTGGAATGTTGACCATCAGATTGACATCCCCAACACCGAAGAAATACGCGTTATTCCATTTTGTTGAGAAAGTGGGCTTATTGATGACCATAACCTTCAACTTCGTTAGAAACTTTTTGCTTCAGCCCATTTTATGTTGAGATTGAACAATTCATTACCCCATGTCATCTTTGTTATGTGTATGTAGTATCGAACGTTCTTTTGCATCTTTCAATAGATAACACTGTAAGAGTATTATGGTCTTTGTGCTATCCAATTCTTCTACTCGGCCTCAGGGGAGGCTTATAGTGTGCTTTGTTCGAGGGGAGGATTGTTG

Coding sequence (CDS)

ATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCCGGCCACGTTGTGTCCGTGGAGCTTAAAAGCGGGGAGCTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGTCAACTCGAAAACATCACCTACACTGCTAAGGATGGGAAGGTCTCTCAGCTTGAGCACGTTTTTATCAGAGGAAGCAAAGTCAGGTTCATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAAAATTAAGGCTCAAGCTGCTGGGCGTGGAGGTGCGACTGGTCGGGGTGCGGTGCCATCTGCCCGAAGGTGA

Protein sequence

MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKAQAAGRGGATGRGAVPSARR
Homology
[Close]
BLAST of CmoCh01G020680 vs. ExPASy Swiss-Prot
Match: Q9LM92 (Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana OX=3702 GN=SMD3B PE=2 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.1e-47
Identity = 91/108 (84.26%), Postives = 102/108 (94.44%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GH+V+VELKSGELYRGSMIECEDNWNCQLE+ITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKAQAAGRGGATGRGAV 109
           EHVFIRGSKVRFMVIPD+LK+APMFKRLDA+IK +++  G   GRGA+
Sbjct: 61  EHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRGAM 108

[Close]
BLAST of CmoCh01G020680 vs. ExPASy Swiss-Prot
Match: Q9S7E6 (Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana OX=3702 GN=SMD3A PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.5e-45
Identity = 93/128 (72.66%), Postives = 102/128 (79.69%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHE++GH+VSVE+KSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAK---------------IKAQAAGRGGATGR 114
           EHVFIRGS VRF+VIPDMLKNAPMFK +  K               ++A+  GRG   GR
Sbjct: 61  EHVFIRGSLVRFLVIPDMLKNAPMFKDVRGKGKSASLGVGRGRGAAMRAKGTGRGTGGGR 120

[Close]
BLAST of CmoCh01G020680 vs. ExPASy Swiss-Prot
Match: P62318 (Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens OX=9606 GN=SNRPD3 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-30
Identity = 62/109 (56.88%), Postives = 83/109 (76.15%), Query Frame = 0 

Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64  FIRGSKVRFMVIPDMLKNAPMFKRLDAKIKAQAAGRGGATGRGAVPSAR 113
           +IRGSK+RF+++PDMLKNAPM K +  K +   AGRG A    A  +AR
Sbjct: 62  YIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAAR 110

[Close]
BLAST of CmoCh01G020680 vs. ExPASy Swiss-Prot
Match: P62320 (Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus OX=10090 GN=Snrpd3 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-30
Identity = 62/109 (56.88%), Postives = 83/109 (76.15%), Query Frame = 0 

Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64  FIRGSKVRFMVIPDMLKNAPMFKRLDAKIKAQAAGRGGATGRGAVPSAR 113
           +IRGSK+RF+++PDMLKNAPM K +  K +   AGRG A    A  +AR
Sbjct: 62  YIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAAR 110

[Close]
BLAST of CmoCh01G020680 vs. ExPASy Swiss-Prot
Match: P62323 (Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis OX=8355 GN=snrpd3 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-30
Identity = 62/109 (56.88%), Postives = 83/109 (76.15%), Query Frame = 0 

Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64  FIRGSKVRFMVIPDMLKNAPMFKRLDAKIKAQAAGRGGATGRGAVPSAR 113
           +IRGSK+RF+++PDMLKNAPM K +  K +   AGRG A    A  +AR
Sbjct: 62  YIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAAR 110

[Close]
BLAST of CmoCh01G020680 vs. ExPASy TrEMBL
Match: A0A6J1IVB4 (Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita maxima OX=3661 GN=LOC111480932 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.2e-52
Identity = 113/132 (85.61%), Postives = 113/132 (85.61%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI-------------------KAQAAGRGG 114
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI                   KAQAAGRGG
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

[Close]
BLAST of CmoCh01G020680 vs. ExPASy TrEMBL
Match: A0A6J1FQ35 (Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita moschata OX=3662 GN=LOC111446231 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.2e-52
Identity = 113/132 (85.61%), Postives = 113/132 (85.61%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI-------------------KAQAAGRGG 114
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI                   KAQAAGRGG
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

[Close]
BLAST of CmoCh01G020680 vs. ExPASy TrEMBL
Match: A0A6J1IBE9 (Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita maxima OX=3661 GN=LOC111473626 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 4.9e-52
Identity = 112/132 (84.85%), Postives = 113/132 (85.61%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI-------------------KAQAAGRGG 114
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDA+I                   KAQAAGRGG
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

[Close]
BLAST of CmoCh01G020680 vs. ExPASy TrEMBL
Match: A0A6J1F9D0 (Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita moschata OX=3662 GN=LOC111443497 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 4.9e-52
Identity = 112/132 (84.85%), Postives = 113/132 (85.61%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI-------------------KAQAAGRGG 114
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDA+I                   KAQAAGRGG
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

[Close]
BLAST of CmoCh01G020680 vs. ExPASy TrEMBL
Match: A0A6J1DDX8 (Small nuclear ribonucleoprotein Sm D3 OS=Momordica charantia OX=3673 GN=LOC111019638 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.5e-51
Identity = 110/132 (83.33%), Postives = 112/132 (84.85%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI-------------------KAQAAGRGG 114
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDA+I                   KAQAAGRG 
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

[Close]
BLAST of CmoCh01G020680 vs. NCBI nr
Match: XP_022940723.1 (small nuclear ribonucleoprotein SmD3b-like isoform X1 [Cucurbita moschata] >XP_022981932.1 small nuclear ribonucleoprotein SmD3b-like [Cucurbita maxima])

HSP 1 Score: 214.5 bits (545), Expect = 4.6e-52
Identity = 113/132 (85.61%), Postives = 113/132 (85.61%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI-------------------KAQAAGRGG 114
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI                   KAQAAGRGG
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

[Close]
BLAST of CmoCh01G020680 vs. NCBI nr
Match: KAG6591223.1 (Small nuclear ribonucleoprotein SmD3b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-51
Identity = 112/132 (84.85%), Postives = 113/132 (85.61%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI-------------------KAQAAGRGG 114
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDA+I                   KAQAAGRGG
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

[Close]
BLAST of CmoCh01G020680 vs. NCBI nr
Match: XP_022937091.1 (small nuclear ribonucleoprotein SmD3b-like [Cucurbita moschata] >XP_022974862.1 small nuclear ribonucleoprotein SmD3b-like [Cucurbita maxima] >XP_023534840.1 small nuclear ribonucleoprotein SmD3b-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023534841.1 small nuclear ribonucleoprotein SmD3b-like isoform X2 [Cucurbita pepo subsp. pepo] >KAG6608630.1 Small nuclear ribonucleoprotein SmD3b, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024110.1 Small nuclear ribonucleoprotein SmD3b [Cucurbita argyrosperma subsp. argyrosperma] >KAG7037947.1 Small nuclear ribonucleoprotein SmD3b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-51
Identity = 112/132 (84.85%), Postives = 113/132 (85.61%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI-------------------KAQAAGRGG 114
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDA+I                   KAQAAGRGG
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

[Close]
BLAST of CmoCh01G020680 vs. NCBI nr
Match: XP_023522400.1 (small nuclear ribonucleoprotein SmD3b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.8 bits (538), Expect = 3.0e-51
Identity = 111/132 (84.09%), Postives = 112/132 (84.85%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI-------------------KAQAAGRGG 114
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDA+I                   KAQAAGRGG
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

[Close]
BLAST of CmoCh01G020680 vs. NCBI nr
Match: XP_022151728.1 (small nuclear ribonucleoprotein SmD3b-like [Momordica charantia] >XP_022151729.1 small nuclear ribonucleoprotein SmD3b-like [Momordica charantia] >XP_022151731.1 small nuclear ribonucleoprotein SmD3b-like [Momordica charantia])

HSP 1 Score: 209.9 bits (533), Expect = 1.1e-50
Identity = 110/132 (83.33%), Postives = 112/132 (84.85%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI-------------------KAQAAGRGG 114
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDA+I                   KAQAAGRG 
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

[Close]
BLAST of CmoCh01G020680 vs. TAIR 10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 189.5 bits (480), Expect = 1.5e-48
Identity = 91/108 (84.26%), Postives = 102/108 (94.44%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GH+V+VELKSGELYRGSMIECEDNWNCQLE+ITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKAQAAGRGGATGRGAV 109
           EHVFIRGSKVRFMVIPD+LK+APMFKRLDA+IK +++  G   GRGA+
Sbjct: 61  EHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRGAM 108

[Close]
BLAST of CmoCh01G020680 vs. TAIR 10
Match: AT1G76300.1 (snRNP core protein SMD3 )

HSP 1 Score: 182.6 bits (462), Expect = 1.8e-46
Identity = 93/128 (72.66%), Postives = 102/128 (79.69%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHE++GH+VSVE+KSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAK---------------IKAQAAGRGGATGR 114
           EHVFIRGS VRF+VIPDMLKNAPMFK +  K               ++A+  GRG   GR
Sbjct: 61  EHVFIRGSLVRFLVIPDMLKNAPMFKDVRGKGKSASLGVGRGRGAAMRAKGTGRGTGGGR 120

[Close]
BLAST of CmoCh01G020680 vs. TAIR 10
Match: AT5G27720.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-10
Identity = 35/109 (32.11%), Postives = 58/109 (53.21%), Query Frame = 0 

Query: 7   IPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFI 66
           +P+ LL  A GH + VELK+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61

Query: 67  RGSKVRFMVIPDMLKNAPMFKRLDAKIKAQAAGR--------GGATGRG 107
           RG+ ++++ +PD + +    ++     K    GR        GGA GRG
Sbjct: 62  RGNTIKYLRVPDEVIDKVQEEKTRTDRKPPGVGRGRGRGVDDGGARGRG 110

[Close]
BLAST of CmoCh01G020680 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 52.4 bits (124), Expect = 2.8e-07
Identity = 30/105 (28.57%), Postives = 52/105 (49.52%), Query Frame = 0 

Query: 9   VKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
           V+ L +     VS+ELK+G +  G++   + + N  L+ +  T K      L+H+ +RG+
Sbjct: 4   VRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSVRGN 63

Query: 69  KVRFMVIPDMLKNAPMFKRLDAKIKAQ-------AAGRGGATGRG 107
            +R+ ++PD L    +      +IK +        AGRG   GRG
Sbjct: 64  NIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRG 108

[Close]
BLAST of CmoCh01G020680 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 51.6 bits (122), Expect = 4.8e-07
Identity = 26/98 (26.53%), Postives = 50/98 (51.02%), Query Frame = 0 

Query: 9   VKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
           V+ L +     VS+ELK+G +  G++   + + N  L+ +  + K      L+H+ +RG+
Sbjct: 4   VRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGN 63

Query: 69  KVRFMVIPDMLKNAPMFKRLDAKIKAQAAGRGGATGRG 107
            +R+ ++PD L    +      ++K +    G A GRG
Sbjct: 64  NIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRG 101

The following BLAST results are available for this feature:
BLAST of CmoCh01G020680 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LM922.1e-4784.26Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana OX=3702 GN=SMD3B P... [more]
Q9S7E62.5e-4572.66Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana OX=3702 GN=SMD3A P... [more]
P623181.0e-3056.88Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens OX=9606 GN=SNRPD3 PE=1 SV=... [more]
P623201.0e-3056.88Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus OX=10090 GN=Snrpd3 PE=1 SV... [more]
P623231.0e-3056.88Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis OX=8355 GN=snrpd3 PE=2 S... [more]
BLAST of CmoCh01G020680 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IVB42.2e-5285.61Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita maxima OX=3661 GN=LOC11148093... [more]
A0A6J1FQ352.2e-5285.61Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita moschata OX=3662 GN=LOC111446... [more]
A0A6J1IBE94.9e-5284.85Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita maxima OX=3661 GN=LOC11147362... [more]
A0A6J1F9D04.9e-5284.85Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita moschata OX=3662 GN=LOC111443... [more]
A0A6J1DDX85.5e-5183.33Small nuclear ribonucleoprotein Sm D3 OS=Momordica charantia OX=3673 GN=LOC11101... [more]
BLAST of CmoCh01G020680 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022940723.14.6e-5285.61small nuclear ribonucleoprotein SmD3b-like isoform X1 [Cucurbita moschata] >XP_0... [more]
KAG6591223.11.0e-5184.85Small nuclear ribonucleoprotein SmD3b, partial [Cucurbita argyrosperma subsp. so... [more]
XP_022937091.11.0e-5184.85small nuclear ribonucleoprotein SmD3b-like [Cucurbita moschata] >XP_022974862.1 ... [more]
XP_023522400.13.0e-5184.09small nuclear ribonucleoprotein SmD3b-like [Cucurbita pepo subsp. pepo][more]
XP_022151728.11.1e-5083.33small nuclear ribonucleoprotein SmD3b-like [Momordica charantia] >XP_022151729.1... [more]
BLAST of CmoCh01G020680 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G20580.11.5e-4884.26Small nuclear ribonucleoprotein family protein [more]
AT1G76300.11.8e-4672.66snRNP core protein SMD3 [more]
AT5G27720.11.2e-1032.11Small nuclear ribonucleoprotein family protein [more]
AT4G02840.12.8e-0728.57Small nuclear ribonucleoprotein family protein [more]
AT3G07590.14.8e-0726.53Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 10..75
e-value: 5.2E-17
score: 72.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 11..74
e-value: 2.4E-15
score: 56.0
NoneNo IPR availableGENE3D2.30.30.100coord: 3..86
e-value: 1.0E-32
score: 113.5
NoneNo IPR availablePANTHERPTHR23338:SF43SMALL NUCLEAR RIBONUCLEOPROTEIN SMD3Acoord: 1..107
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..107
IPR034099Small nuclear ribonucleoprotein Sm D3CDDcd01721Sm_D3coord: 8..77
e-value: 1.643E-46
score: 142.275
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 8..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G020680.1CmoCh01G020680.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0000243 commitment complex
cellular_component GO:0005829 cytosol
cellular_component GO:0034715 pICln-Sm protein complex
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0034719 SMN-Sm protein complex
cellular_component GO:0097526 spliceosomal tri-snRNP complex
cellular_component GO:0005689 U12-type spliceosomal complex
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0005687 U4 snRNP
cellular_component GO:0005682 U5 snRNP
cellular_component GO:0005681 spliceosomal complex
molecular_function GO:0003723 RNA binding