CmoCh01G018370 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGAGAAAGAGAAAAAGGGAAGTTTTTGTTATATAACCATTTCAATTAGCATCACTTCTTCTGCTACCTCTCAAAGCCTAAACCACTGAGTTTCCACCATGAATGATTGGTCTGCTACACATTATTGCAGAGGAGGGGAATCAGGTTGGACTATGTACTTAGACCAATCCTATACTTCTGGTGGCGGGGTGGGTGAGAATTACAGGGAAATAGAAGCAAAAGTAAGAGCAGAGAAGGATGAAGAAGAAGAAGATCTGTCAATGGTGTCTGATGCTTCCTCAGGTCCACCAAATTACAATGAAGAATGCTTTTACAATAATGGGGATTCAGCTTCAGAATCAGCAATGAATTGTAGCCGGGAGGAGAAAAAGAAGAGCAAGAAGGGCAAACAAAATGGCAGAAATGACCAACATTCTTATCTCGATGACACTGCTAGCTCCACGATATATGGCTATGGCTATGGCTATGGCTATGGCAAAGCAAGTGTAAAGAACATTTCCGTTACATTTTTATCTCTAAATTCCAGAAGAAATGGATGAATCTTATGCTGTTCATTGTATATTATGCAGAAAATTAATGGAGCATCAAGCAAAGAAGCATTGGAGACGAATGCAATAGAACTTTCTCAGGGATTCTCCGCAACCCACGTTAAGGTAATTTGATGAAATCATAAGATTGAGCAAGTTTTTGTATGCATTGTTAACTAAAAAAGTGAAACTTTTGAACACAGAGAAAACCTGCGGTGAAGAAACGCTTCGGCTTTTATCGCTCTGAAAGATCAGCACCCGAAGAATGAGGGTATTACCAATTCCGCCGCAGAAGAATGATAACGACATGTTATTTATGTATATAAGGAACATTGTTCCTTTTGTTATTATTTTTTCGTTTCAATTTAATTTTCCCCCAATGTGTTAGCTGTGTGCTTTCTCTTTTACACGTTCTTGTCATTGCAATGGGAAAGTGGAAGCACTAAAAATGGACCCAAAAAAATCGAGAAAGAAAAGAAAAGAAAAGAAAAGTCCTCTCTCGTTCACTAAATAGTGCTCATCGTGTCAACCATGAAGTTACCATCACGTTTACAATGCCTTCGTTTTGATTTACTCCAGCT AGAGAAAGAGAAAAAGGGAAGTTTTTGTTATATAACCATTTCAATTAGCATCACTTCTTCTGCTACCTCTCAAAGCCTAAACCACTGAGTTTCCACCATGAATGATTGGTCTGCTACACATTATTGCAGAGGAGGGGAATCAGGTTGGACTATGTACTTAGACCAATCCTATACTTCTGGTGGCGGGGTGGGTGAGAATTACAGGGAAATAGAAGCAAAAGTAAGAGCAGAGAAGGATGAAGAAGAAGAAGATCTGTCAATGGTGTCTGATGCTTCCTCAGGTCCACCAAATTACAATGAAGAATGCTTTTACAATAATGGGGATTCAGCTTCAGAATCAGCAATGAATTGTAGCCGGGAGGAGAAAAAGAAGAGCAAGAAGGGCAAACAAAATGGCAGAAATGACCAACATTCTTATCTCGATGACACTGCTAGCTCCACGATATATGGCTATGGCTATGGCTATGGCTATGGCAAAGCAAGTAAAATTAATGGAGCATCAAGCAAAGAAGCATTGGAGACGAATGCAATAGAACTTTCTCAGGGATTCTCCGCAACCCACGTTAAGAGAAAACCTGCGGTGAAGAAACGCTTCGGCTTTTATCGCTCTGAAAGATCAGCACCCGAAGAATGAGGGTATTACCAATTCCGCCGCAGAAGAATGATAACGACATGTTATTTATGTATATAAGGAACATTGTTCCTTTTGTTATTATTTTTTCGTTTCAATTTAATTTTCCCCCAATGTGTTAGCTGTGTGCTTTCTCTTTTACACGTTCTTGTCATTGCAATGGGAAAGTGGAAGCACTAAAAATGGACCCAAAAAAATCGAGAAAGAAAAGAAAAGAAAAGAAAAGTCCTCTCTCGTTCACTAAATAGTGCTCATCGTGTCAACCATGAAGTTACCATCACGTTTACAATGCCTTCGTTTTGATTTACTCCAGCT ATGAATGATTGGTCTGCTACACATTATTGCAGAGGAGGGGAATCAGGTTGGACTATGTACTTAGACCAATCCTATACTTCTGGTGGCGGGGTGGGTGAGAATTACAGGGAAATAGAAGCAAAAGTAAGAGCAGAGAAGGATGAAGAAGAAGAAGATCTGTCAATGGTGTCTGATGCTTCCTCAGGTCCACCAAATTACAATGAAGAATGCTTTTACAATAATGGGGATTCAGCTTCAGAATCAGCAATGAATTGTAGCCGGGAGGAGAAAAAGAAGAGCAAGAAGGGCAAACAAAATGGCAGAAATGACCAACATTCTTATCTCGATGACACTGCTAGCTCCACGATATATGGCTATGGCTATGGCTATGGCTATGGCAAAGCAAGTAAAATTAATGGAGCATCAAGCAAAGAAGCATTGGAGACGAATGCAATAGAACTTTCTCAGGGATTCTCCGCAACCCACGTTAAGAGAAAACCTGCGGTGAAGAAACGCTTCGGCTTTTATCGCTCTGAAAGATCAGCACCCGAAGAATGA MNDWSATHYCRGGESGWTMYLDQSYTSGGGVGENYREIEAKVRAEKDEEEEDLSMVSDASSGPPNYNEECFYNNGDSASESAMNCSREEKKKSKKGKQNGRNDQHSYLDDTASSTIYGYGYGYGYGKASKINGASSKEALETNAIELSQGFSATHVKRKPAVKKRFGFYRSERSAPEE Homology
BLAST of CmoCh01G018370 vs. ExPASy Swiss-Prot
Match: Q8L9K4 (Protein SOB FIVE-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=SOFL5 PE=2 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 6.4e-11 Identity = 58/173 (33.53%), Postives = 90/173 (52.02%), Query Frame = 0
BLAST of CmoCh01G018370 vs. ExPASy Swiss-Prot
Match: B6IDH8 (Protein SOB FIVE-LIKE 6 OS=Arabidopsis thaliana OX=3702 GN=SOFL6 PE=2 SV=1) HSP 1 Score: 50.1 bits (118), Expect = 3.1e-05 Identity = 43/122 (35.25%), Postives = 56/122 (45.90%), Query Frame = 0
BLAST of CmoCh01G018370 vs. ExPASy TrEMBL
Match: A0A6J1FLQ4 (uncharacterized protein LOC111446559 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446559 PE=3 SV=1) HSP 1 Score: 352.4 bits (903), Expect = 1.1e-93 Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
BLAST of CmoCh01G018370 vs. ExPASy TrEMBL
Match: A0A6J1FRE9 (uncharacterized protein LOC111446559 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446559 PE=3 SV=1) HSP 1 Score: 344.7 bits (883), Expect = 2.2e-91 Identity = 176/178 (98.88%), Postives = 176/178 (98.88%), Query Frame = 0
BLAST of CmoCh01G018370 vs. ExPASy TrEMBL
Match: A0A6J1IZJ4 (uncharacterized protein LOC111481310 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481310 PE=3 SV=1) HSP 1 Score: 329.3 bits (843), Expect = 9.7e-87 Identity = 169/178 (94.94%), Postives = 171/178 (96.07%), Query Frame = 0
BLAST of CmoCh01G018370 vs. ExPASy TrEMBL
Match: A0A6J1IWT5 (uncharacterized protein LOC111481310 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481310 PE=3 SV=1) HSP 1 Score: 321.6 bits (823), Expect = 2.0e-84 Identity = 167/178 (93.82%), Postives = 169/178 (94.94%), Query Frame = 0
BLAST of CmoCh01G018370 vs. ExPASy TrEMBL
Match: A0A6J1CDG6 (uncharacterized protein LOC111010447 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010447 PE=3 SV=1) HSP 1 Score: 225.3 bits (573), Expect = 2.0e-55 Identity = 130/191 (68.06%), Postives = 146/191 (76.44%), Query Frame = 0
BLAST of CmoCh01G018370 vs. NCBI nr
Match: XP_022941182.1 (uncharacterized protein LOC111446559 isoform X1 [Cucurbita moschata]) HSP 1 Score: 352.4 bits (903), Expect = 2.2e-93 Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
BLAST of CmoCh01G018370 vs. NCBI nr
Match: XP_022941183.1 (uncharacterized protein LOC111446559 isoform X2 [Cucurbita moschata]) HSP 1 Score: 344.7 bits (883), Expect = 4.6e-91 Identity = 176/178 (98.88%), Postives = 176/178 (98.88%), Query Frame = 0
BLAST of CmoCh01G018370 vs. NCBI nr
Match: KAG7037756.1 (hypothetical protein SDJN02_01387, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 341.7 bits (875), Expect = 3.9e-90 Identity = 177/186 (95.16%), Postives = 177/186 (95.16%), Query Frame = 0
BLAST of CmoCh01G018370 vs. NCBI nr
Match: KAG6608419.1 (hypothetical protein SDJN03_01761, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 341.3 bits (874), Expect = 5.1e-90 Identity = 176/182 (96.70%), Postives = 176/182 (96.70%), Query Frame = 0
BLAST of CmoCh01G018370 vs. NCBI nr
Match: XP_023524402.1 (uncharacterized protein LOC111788307 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 333.2 bits (853), Expect = 1.4e-87 Identity = 174/180 (96.67%), Postives = 174/180 (96.67%), Query Frame = 0
BLAST of CmoCh01G018370 vs. TAIR 10
Match: AT4G33800.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 68.9 bits (167), Expect = 4.6e-12 Identity = 58/173 (33.53%), Postives = 90/173 (52.02%), Query Frame = 0
BLAST of CmoCh01G018370 vs. TAIR 10
Match: AT1G58460.1 (unknown protein; Has 35 Blast hits to 35 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 50.1 bits (118), Expect = 2.2e-06 Identity = 43/122 (35.25%), Postives = 56/122 (45.90%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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