CmoCh01G010490 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh01G010490
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionRibosomal protein S12
LocationCmo_Chr01: 8280811 .. 8281354 (-)
RNA-Seq ExpressionCmoCh01G010490
SyntenyCmoCh01G010490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTACATTAAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGTACTCGAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTACGCCCGCGTCTTTCAACGAGAATATTGAAAAAAGCCTAATTCAGCTCCATGTAAGATGGCCAAAGTACGGTTGAGCAATCGACATGATAATTTACTCACATTTCGGACGAAGGTCATAATTTTAACTCATTTGTTGCATTTGATAGATAACAATTTAGTCGACTTGCTCAATGTTCTCCGAAGCACTATTAACTATTAAACTCTTTGTATATAAGAATCAACTTCAAAATTACATTGTCGATGTGAGCTCAAATCTTGGGTTTGTTGAAAAAAAAAGTGCAAGCGTTATTGCACTAAAAATGGTTGTAATAAATAGAGATTAAGTCTACCTAATGGTTTATCAAATGTTCGATCACATGATCGAATGAAAGATCAATTGATAAATGGTTGTCTCATACCATATATTAACAAAGATTTCCGTGACAAGTTAGACAATAAAATCTAA

mRNA sequence

ATGCCTACATTAAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGTACTCGAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTACGCCCGCCTCCATGTAAGATGGCCAAAGTACGGTTGAGCAATCGACATGATAATTTACTCACATTTCGGACGAAGAGATTAAGTCTACCTAATGGTTTATCAAATGTTCGATCACATGATCGAATGAAAGATCAATTGATAAATGGTTGTCTCATACCATATATTAACAAAGATTTCCGTGACAAGTTAGACAATAAAATCTAA

Coding sequence (CDS)

ATGCCTACATTAAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGTACTCGAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTACGCCCGCCTCCATGTAAGATGGCCAAAGTACGGTTGAGCAATCGACATGATAATTTACTCACATTTCGGACGAAGAGATTAAGTCTACCTAATGGTTTATCAAATGTTCGATCACATGATCGAATGAAAGATCAATTGATAAATGGTTGTCTCATACCATATATTAACAAAGATTTCCGTGACAAGTTAGACAATAAAATCTAA

Protein sequence

MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPPPCKMAKVRLSNRHDNLLTFRTKRLSLPNGLSNVRSHDRMKDQLINGCLIPYINKDFRDKLDNKI
Homology
[Close]
BLAST of CmoCh01G010490 vs. ExPASy Swiss-Prot
Match: P60096 (Ribosomal protein S12, mitochondrial OS=Magnolia grandiflora OX=3406 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.5e-17
Identity = 47/62 (75.81%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 1  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRP------------PPCKMAKVRLSNR 51
          MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRP             P K+AKVRLSNR
Sbjct: 1  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVPTRTPKKPNSAPRKIAKVRLSNR 60

[Close]
BLAST of CmoCh01G010490 vs. ExPASy Swiss-Prot
Match: P60097 (Ribosomal protein S12, mitochondrial OS=Magnolia soulangeana OX=3407 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.5e-17
Identity = 47/62 (75.81%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 1  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRP------------PPCKMAKVRLSNR 51
          MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRP             P K+AKVRLSNR
Sbjct: 1  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVPTRTPKKPNSAPRKIAKVRLSNR 60

[Close]
BLAST of CmoCh01G010490 vs. ExPASy Swiss-Prot
Match: P27070 (Ribosomal protein S12, mitochondrial OS=Panax ginseng OX=4054 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-16
Identity = 46/62 (74.19%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 1  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRP------------PPCKMAKVRLSNR 51
          MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRP             P K+AKVRL+NR
Sbjct: 1  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVPTRTPKKPNSAPRKIAKVRLANR 60

[Close]
BLAST of CmoCh01G010490 vs. ExPASy Swiss-Prot
Match: P68535 (Ribosomal protein S12, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.2e-15
Identity = 44/62 (70.97%), Postives = 46/62 (74.19%), Query Frame = 0 

Query: 1  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRP------------PPCKMAKVRLSNR 51
          MP+LNQLIRHGREEKRRTDRTRA DQCPQKQGV P             P K+AKVRLSNR
Sbjct: 1  MPSLNQLIRHGREEKRRTDRTRALDQCPQKQGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

[Close]
BLAST of CmoCh01G010490 vs. ExPASy Swiss-Prot
Match: P68536 (Ribosomal protein S12, mitochondrial OS=Petunia parodii OX=55890 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.2e-15
Identity = 44/62 (70.97%), Postives = 46/62 (74.19%), Query Frame = 0 

Query: 1  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRP------------PPCKMAKVRLSNR 51
          MP+LNQLIRHGREEKRRTDRTRA DQCPQKQGV P             P K+AKVRLSNR
Sbjct: 1  MPSLNQLIRHGREEKRRTDRTRALDQCPQKQGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

[Close]
BLAST of CmoCh01G010490 vs. ExPASy TrEMBL
Match: F6GZF4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0873g00010 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.3e-15
Identity = 47/62 (75.81%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 1  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRP------------PPCKMAKVRLSNR 51
          MPTLNQLIRHGREEKR TDRTRASDQCPQKQGVRP             PCK+AKVRLSNR
Sbjct: 1  MPTLNQLIRHGREEKRLTDRTRASDQCPQKQGVRPRVPTRTPKKPNSAPCKIAKVRLSNR 60

[Close]
BLAST of CmoCh01G010490 vs. ExPASy TrEMBL
Match: Q9XPB3 (Rps12 OS=Vigna radiata var. radiata OX=3916 GN=rps12 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.8e-14
Identity = 47/62 (75.81%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 1  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRP------------PPCKMAKVRLSNR 51
          MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRP             P K+AKVRLSNR
Sbjct: 1  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 60

[Close]
BLAST of CmoCh01G010490 vs. ExPASy TrEMBL
Match: Q9B6J7 (Ribosomal protein L12 OS=Helianthus annuus OX=4232 GN=rps12 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.8e-14
Identity = 47/62 (75.81%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 1  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRP------------PPCKMAKVRLSNR 51
          MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRP             P K+AKVRLSNR
Sbjct: 1  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVPTRTPKKPNSAPRKIAKVRLSNR 60

[Close]
BLAST of CmoCh01G010490 vs. ExPASy TrEMBL
Match: A0A6C0M9Y2 (Ribosomal protein S12 OS=Pediomelum tenuiflorum OX=247917 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.8e-14
Identity = 47/62 (75.81%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 1  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRP------------PPCKMAKVRLSNR 51
          MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRP             P K+AKVRLSNR
Sbjct: 1  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKKPNSAPRKIAKVRLSNR 60

[Close]
BLAST of CmoCh01G010490 vs. ExPASy TrEMBL
Match: A0A7G8P5H7 (Ribosomal protein S12 OS=Daucus crinitus OX=79167 GN=rps12 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.8e-14
Identity = 47/62 (75.81%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 1  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRP------------PPCKMAKVRLSNR 51
          MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRP             P K+AKVRLSNR
Sbjct: 1  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVPTRTPKKPNSAPRKIAKVRLSNR 60

[Close]
BLAST of CmoCh01G010490 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 77.0 bits (188), Expect = 9.4e-15
Identity = 42/62 (67.74%), Postives = 44/62 (70.97%), Query Frame = 0 

Query: 1  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRP------------PPCKMAKVRLSNR 51
          MPT NQLIRHGREEKRRTDRTRA D+CPQK GV P             P K+AKVRLSNR
Sbjct: 1  MPTFNQLIRHGREEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

[Close]
BLAST of CmoCh01G010490 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 77.0 bits (188), Expect = 9.4e-15
Identity = 42/62 (67.74%), Postives = 44/62 (70.97%), Query Frame = 0 

Query: 1  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRP------------PPCKMAKVRLSNR 51
          MPT NQLIRHGREEKRRTDRTRA D+CPQK GV P             P K+AKVRLSNR
Sbjct: 1  MPTFNQLIRHGREEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNR 60

[Close]
BLAST of CmoCh01G010490 vs. TAIR 10
Match: AT2G07773.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 8.8e-05
Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = 0 

Query: 1  MPTLNQLIRHGREEKRRTDRT 22
          MPT NQLIRHGREEKRRTDRT
Sbjct: 1  MPTFNQLIRHGREEKRRTDRT 21

[Close]
BLAST of CmoCh01G010490 vs. TAIR 10
Match: ATMG00910.1 (hypothetical protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.2e-04
Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = 0 

Query: 1  MPTLNQLIRHGREEKRRTDRT 22
          MPT NQLIRHGREEKRRTDRT
Sbjct: 1  MPTANQLIRHGREEKRRTDRT 21

The following BLAST results are available for this feature:
BLAST of CmoCh01G010490 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P600967.5e-1775.81Ribosomal protein S12, mitochondrial OS=Magnolia grandiflora OX=3406 GN=RPS12 PE... [more]
P600977.5e-1775.81Ribosomal protein S12, mitochondrial OS=Magnolia soulangeana OX=3407 GN=RPS12 PE... [more]
P270701.7e-1674.19Ribosomal protein S12, mitochondrial OS=Panax ginseng OX=4054 GN=RPS12 PE=3 SV=1[more]
P685359.2e-1570.97Ribosomal protein S12, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS12 PE=3 SV... [more]
P685369.2e-1570.97Ribosomal protein S12, mitochondrial OS=Petunia parodii OX=55890 GN=RPS12 PE=3 S... [more]
BLAST of CmoCh01G010490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
F6GZF47.3e-1575.81Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0873g00010 PE=3 SV=... [more]
Q9XPB32.8e-1475.81Rps12 OS=Vigna radiata var. radiata OX=3916 GN=rps12 PE=3 SV=1[more]
Q9B6J72.8e-1475.81Ribosomal protein L12 OS=Helianthus annuus OX=4232 GN=rps12 PE=3 SV=1[more]
A0A6C0M9Y22.8e-1475.81Ribosomal protein S12 OS=Pediomelum tenuiflorum OX=247917 PE=3 SV=1[more]
A0A7G8P5H72.8e-1475.81Ribosomal protein S12 OS=Daucus crinitus OX=79167 GN=rps12 PE=3 SV=1[more]
BLAST of CmoCh01G010490 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G07675.19.4e-1567.74Ribosomal protein S12/S23 family protein [more]
ATMG00980.19.4e-1567.74Ribosomal protein S12/S23 family protein [more]
AT2G07773.18.8e-0595.24unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
ATMG00910.11.2e-0495.24hypothetical protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 1..35
e-value: 1.3E-5
score: 26.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G010490.1CmoCh01G010490.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0016020 membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome