CmoCh01G004540 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAGCTCTAAGGCTGTCTTGAAATTGTTTTTGTGGGTGTGAAGATCAGAAGAAATCTGTAGCTCTGAAACCCTAAGAACAAGAACAAAAAAAGAGAGACTAGGGTTTAATTCTTTTTTGTTTGGGAAAAACAAAAAAACAACAACAAAAATCACTGTTTTCTGCCTCTACCTCACTAGGGTTTAATTCTTTTTTGTTCTTGTTGGATCCCAAGAACAGAGCCAGAGGCTTTGTTTTCAGGGGTAAGGAAATGGGAAGAGGAAGAGTGGAGCTGAAGAGAATAGAGAACAAGATAAACAGGCAGGTAACATTTGCCAAGAGAAGGAGTGGGCTGTTGAAGAAAGCTTATGAGCTCTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCTAATCGTGGCAAGCTCTATGAGTTCTGTAGCACTTCCAAGTACTCTTCTCATCCTCATCTTTCTAGGGTTTCCTTTTCATTTTGTTTTTGTTTATACCCATTTAGATCCATAATTGCTTCTTCATCATCTCTCATTTCATGTTGTTTCTTGCCTCAGTATGCTCAAGACACTGGAAAGGTACCAGAAATGCAGTTATGGAGCTGTCGAGGTCGCCAAACCCGCCAAAGAGCTCGAGGTGAATCGTCTATGCAGACACCCATGTCGTTAATGATTAAATTTATCGTAATCTATCAACTACCTATGAATTCTCGATCGTAAAAATTGGATTTTTATTTTTTATTTTTACAGAGTAGCTATAGAGAGTACTTGAAGCTGAAGGCTAGGTTTGAGTCTCTACAAAGAACTCAGAGGTAACTAATTTTTTTTTAATTATTGATGTAAATTAACCTATGAATACATTTAAGTTTAGAATTAGGGCTTAACATTGGTTATTTATGTTATGGCAGAAATCTTCTTGGTGAGGAGTTGGGTCCATTGAACTCTAAAGAGCTTGAGCAGCTGGAGCGTCAGCTCGAGTCTTCTTTGAAGCAAGTTAGGTCTACTAAGGTAAGTTCATTAAAATTTAGCTCTAACCCATAATTTATTTCTCTTTTTAACTATGATTTTGATCGTTAATGTGAGATCCCGCCCCGAAGTGGGGTGGACACGAGCCAACAAGGACGCAGGGCTTCGAAAGGGGTGGATTGTGAGATCCCGCATCGGTTGGGGAGGAGAACGAAATACCCTTCCTTCATAAGGGTGTGGATACTCTCCCTAGCATACACGTTTTAACAACCTTGAGGAAAGCCCAAATAGAACAATATCTGTTAGCTCATACACGTTTTAACAACCTTGAGGAAAGCCCAAATAGAACAATATCTGTTAGCAGTGGGGTTGAGCATTAGATCATCAAATGGGTCTTGATTATATCAATTCTCGTTTTGATTCTCATTCTCATTCATGTTTCTAGGGTTTGTCTCGATAGAATTATCCATGTGGCTGTGCTATTGTCTGTTGGTTCTTATAAGACAACATTTGAAGCTTTACCTTTGTACTTTGGAAATGGTATCCCAGATTCTTTGCTTCTTAATTTATTTGCTACCACCAAAAGATTTAAAACTTGGCCAACTATAGCCAGCTAATTGAGTCGATTCTTTGCGGGTTGTTCATCACAATTACTATGATGATAATTATGATAGAGAGGAAATAAAGTCGATTCCTTTTGGAACTACCTCTGAATCCAAATCCATTGCATACCTTGATGGTCCAAATCCATTGCATGCCTTGATGGTACATTGACCTAATGGTTGGCGAAGCCGTATAGGTATACAAAAAGTCAGAATCCCTTAAAAAAAAACTCTTAATGTATGAAAGAACGTTCGGGCTGTTCAACAACGGGATTTATAAAATAAAAACAGAAGAACGAGACAAAAAACATGACATAAAAGGAGGCTAAGAAGAACATAGCATTAAGGAAGAGCAACTACGAGTGTATCTTTATGTCTTGGATCTATGACAAAACTTTTAATGAGTATACCTTTTGAGATCCCATATCGGTGGGAGAGAGTAACAAAACATTACTCATATGGGTGGGTGTGGAAACCTCTCCCTAACATACGTGTTTTAAAAACCTCAAGAGAACCCTAAAAGGAAAAGCTCAAATAGGACAATATGTACTAGTTGTGGGATTGAACTGTTACAAATGGTACCAGAGTTAGACATGAGGCAGTGTGCCAACAAGCACGCTGGGTCCCAAGAGAGGGTGGATTGTGAAATCCCACATTGGTTGGAGAGAAGAACAAAAACATTCCTTGTATAAGGGTGCGAAAACCTATCTCTAACAGACGCATTTTATCATCCTTGAGGAGAAGCTCAACAGAGGACAATGTCTACTAGCAATGAGCTTGGGCTGTTACATCTTATCTTAGCTCAACTCACGAGGTATTTAATTAGTTAATCATTACCAAATTCTAAATACATTTGGAACTGAGAACTTGCAGACCCAGTACATGCTGGACCAGCTATCTGATCTTCAGAACAAGGTAGGCTTGACTTGATACATCAAGTGTTAATATCCGTTGAATTTTCATGGATTCATATGCTAATTGTTGTGTTTTTTTTCAAGTTCAGGAACAAATGCTGATTGAAACCAACAGATCTCTAACATTAAAGGTAACAACCAACATACCTTTCTACAAACAGATTTGAAAAAGAAAAAAACGTCAAAAAAAGATCTAAAGACGAAATCGTTATGAACTCGAATGACTTGGATTTGGTTGGTCAGCTAGAAGAAATGAGTTCAAGAAACAACATAAGACTAACATGGGAAGAAGTAGACCAAAGCATGTCATATGCACCACAGAATGCCCAAACTCAAGGCTTCTTTCAGCCACTGGATTGCAACCCCACTCTGCAAATTGGGTCAGTTCATCCCTTTTGGCTAAGCAAATGAAATGGTTTTTTTTCCGTGGATAATCTGTGTGTTTACTTATGTGGTGTGGTGGGTTTGCAACAGATACAGTGGTTCAGTATCAGATCAAATTACAGCCACCACTGCCCCAAATCATGCCCAACAAGTCAATGCCTTTCTCCCTGGTTGGATGCTTTGAAGGCCTCAAACTCTACCTCTCTTTTTTTATTTATTATTAATTGCAGTATGCTACCAACACTTTGCAAATTTGTTAATAAGGACTTTTATTTTAGACATTATAAGAAAAACCCCCCAACATTTGGCTTCTGGACACGAAAAGAATTTTAAGGAGTAGTGTATGGAGATGAACATAACAAATTTACGTGTATCATTTCTCATCTTCTAACAATTCGGAATCTAGATTTGTGACGTCGTAATGTTATGTACTTTAAAGACTGTCTCCATAGACAAATACGAGTCATGTTTTGTCCTAACTCATATGCATCTTAGAAAAATTATCAGGAGGTCACTCGACATAGAATTACTCTCAGCAAAGCATGCTTAACCTTGGAGTTTCTATGATTAAGTCACTGAAAAGTAAGGTGCATCTTGTTGGTATACGTAGTAATTTTCAATTTTTTTTAGTCTTGTACTTATCCTCATGTATTTTCAGTTCATTTATGTATTATTTCTTTGTTTGAGTGTCAC GAGCTCTAAGGCTGTCTTGAAATTGTTTTTGTGGGTGTGAAGATCAGAAGAAATCTGTAGCTCTGAAACCCTAAGAACAAGAACAAAAAAAGAGAGACTAGGGTTTAATTCTTTTTTGTTTGGGAAAAACAAAAAAACAACAACAAAAATCACTGTTTTCTGCCTCTACCTCACTAGGGTTTAATTCTTTTTTGTTCTTGTTGGATCCCAAGAACAGAGCCAGAGGCTTTGTTTTCAGGGGTAAGGAAATGGGAAGAGGAAGAGTGGAGCTGAAGAGAATAGAGAACAAGATAAACAGGCAGGTAACATTTGCCAAGAGAAGGAGTGGGCTGTTGAAGAAAGCTTATGAGCTCTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCTAATCGTGGCAAGCTCTATGAGTTCTGTAGCACTTCCAATATGCTCAAGACACTGGAAAGGTACCAGAAATGCAGTTATGGAGCTGTCGAGGTCGCCAAACCCGCCAAAGAGCTCGAGAGTAGCTATAGAGAGTACTTGAAGCTGAAGGCTAGGTTTGAGTCTCTACAAAGAACTCAGAGAAATCTTCTTGGTGAGGAGTTGGGTCCATTGAACTCTAAAGAGCTTGAGCAGCTGGAGCGTCAGCTCGAGTCTTCTTTGAAGCAAGTTAGGTCTACTAAGACCCAGTACATGCTGGACCAGCTATCTGATCTTCAGAACAAGGAACAAATGCTGATTGAAACCAACAGATCTCTAACATTAAAGCTAGAAGAAATGAGTTCAAGAAACAACATAAGACTAACATGGGAAGAAGTAGACCAAAGCATGTCATATGCACCACAGAATGCCCAAACTCAAGGCTTCTTTCAGCCACTGGATTGCAACCCCACTCTGCAAATTGGATACAGTGGTTCAGTATCAGATCAAATTACAGCCACCACTGCCCCAAATCATGCCCAACAAGTCAATGCCTTTCTCCCTGGTTGGATGCTTTGAAGGCCTCAAACTCTACCTCTCTTTTTTTATTTATTATTAATTGCAGTATGCTACCAACACTTTGCAAATTTGTTAATAAGGACTTTTATTTTAGACATTATAAGAAAAACCCCCCAACATTTGGCTTCTGGACACGAAAAGAATTTTAAGGAGTAGTGTATGGAGATGAACATAACAAATTTACGTGTATCATTTCTCATCTTCTAACAATTCGGAATCTAGATTTGTGACGTCGTAATGTTATGTACTTTAAAGACTGTCTCCATAGACAAATACGAGTCATGTTTTGTCCTAACTCATATGCATCTTAGAAAAATTATCAGGAGGTCACTCGACATAGAATTACTCTCAGCAAAGCATGCTTAACCTTGGAGTTTCTATGATTAAGTCACTGAAAAGTAAGGTGCATCTTGTTGGTATACGTAGTAATTTTCAATTTTTTTTAGTCTTGTACTTATCCTCATGTATTTTCAGTTCATTTATGTATTATTTCTTTGTTTGAGTGTCAC ATGGGAAGAGGAAGAGTGGAGCTGAAGAGAATAGAGAACAAGATAAACAGGCAGGTAACATTTGCCAAGAGAAGGAGTGGGCTGTTGAAGAAAGCTTATGAGCTCTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCTAATCGTGGCAAGCTCTATGAGTTCTGTAGCACTTCCAATATGCTCAAGACACTGGAAAGGTACCAGAAATGCAGTTATGGAGCTGTCGAGGTCGCCAAACCCGCCAAAGAGCTCGAGAGTAGCTATAGAGAGTACTTGAAGCTGAAGGCTAGGTTTGAGTCTCTACAAAGAACTCAGAGAAATCTTCTTGGTGAGGAGTTGGGTCCATTGAACTCTAAAGAGCTTGAGCAGCTGGAGCGTCAGCTCGAGTCTTCTTTGAAGCAAGTTAGGTCTACTAAGACCCAGTACATGCTGGACCAGCTATCTGATCTTCAGAACAAGGAACAAATGCTGATTGAAACCAACAGATCTCTAACATTAAAGCTAGAAGAAATGAGTTCAAGAAACAACATAAGACTAACATGGGAAGAAGTAGACCAAAGCATGTCATATGCACCACAGAATGCCCAAACTCAAGGCTTCTTTCAGCCACTGGATTGCAACCCCACTCTGCAAATTGGATACAGTGGTTCAGTATCAGATCAAATTACAGCCACCACTGCCCCAAATCATGCCCAACAAGTCAATGCCTTTCTCCCTGGTTGGATGCTTTGA MGRGRVELKRIENKINRQVTFAKRRSGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAVEVAKPAKELESSYREYLKLKARFESLQRTQRNLLGEELGPLNSKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRSLTLKLEEMSSRNNIRLTWEEVDQSMSYAPQNAQTQGFFQPLDCNPTLQIGYSGSVSDQITATTAPNHAQQVNAFLPGWML Homology
BLAST of CmoCh01G004540 vs. ExPASy Swiss-Prot
Match: Q8LLR2 (Agamous-like MADS-box protein MADS2 OS=Vitis vinifera OX=29760 GN=MADS2 PE=2 SV=2) HSP 1 Score: 377.5 bits (968), Expect = 1.2e-103 Identity = 195/247 (78.95%), Postives = 229/247 (92.71%), Query Frame = 0
BLAST of CmoCh01G004540 vs. ExPASy Swiss-Prot
Match: P29382 (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana OX=3702 GN=SEP1 PE=1 SV=2) HSP 1 Score: 353.6 bits (906), Expect = 1.8e-96 Identity = 190/252 (75.40%), Postives = 218/252 (86.51%), Query Frame = 0
BLAST of CmoCh01G004540 vs. ExPASy Swiss-Prot
Match: P29384 (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana OX=3702 GN=SEP2 PE=1 SV=1) HSP 1 Score: 335.1 bits (858), Expect = 6.6e-91 Identity = 179/250 (71.60%), Postives = 209/250 (83.60%), Query Frame = 0
BLAST of CmoCh01G004540 vs. ExPASy Swiss-Prot
Match: Q8LLR0 (Agamous-like MADS-box protein MADS4 OS=Vitis vinifera OX=29760 GN=MADS4 PE=2 SV=2) HSP 1 Score: 295.4 bits (755), Expect = 5.8e-79 Identity = 169/249 (67.87%), Postives = 195/249 (78.31%), Query Frame = 0
BLAST of CmoCh01G004540 vs. ExPASy Swiss-Prot
Match: Q03489 (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida OX=4102 GN=FBP2 PE=1 SV=2) HSP 1 Score: 293.5 bits (750), Expect = 2.2e-78 Identity = 170/249 (68.27%), Postives = 194/249 (77.91%), Query Frame = 0
BLAST of CmoCh01G004540 vs. ExPASy TrEMBL
Match: A0A6J1GB60 (developmental protein SEPALLATA 1-like OS=Cucurbita moschata OX=3662 GN=LOC111452571 PE=4 SV=1) HSP 1 Score: 470.7 bits (1210), Expect = 3.7e-129 Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0
BLAST of CmoCh01G004540 vs. ExPASy TrEMBL
Match: A0A6J1KF82 (developmental protein SEPALLATA 1-like OS=Cucurbita maxima OX=3661 GN=LOC111493333 PE=4 SV=1) HSP 1 Score: 464.2 bits (1193), Expect = 3.5e-127 Identity = 242/246 (98.37%), Postives = 244/246 (99.19%), Query Frame = 0
BLAST of CmoCh01G004540 vs. ExPASy TrEMBL
Match: A0A6J1DN93 (developmental protein SEPALLATA 1 OS=Momordica charantia OX=3673 GN=LOC111022168 PE=4 SV=1) HSP 1 Score: 443.7 bits (1140), Expect = 4.9e-121 Identity = 229/246 (93.09%), Postives = 239/246 (97.15%), Query Frame = 0
BLAST of CmoCh01G004540 vs. ExPASy TrEMBL
Match: A0A6J1J038 (developmental protein SEPALLATA 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111479996 PE=4 SV=1) HSP 1 Score: 440.3 bits (1131), Expect = 5.4e-120 Identity = 229/246 (93.09%), Postives = 237/246 (96.34%), Query Frame = 0
BLAST of CmoCh01G004540 vs. ExPASy TrEMBL
Match: A0A6J1GUW6 (developmental protein SEPALLATA 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457748 PE=4 SV=1) HSP 1 Score: 440.3 bits (1131), Expect = 5.4e-120 Identity = 229/246 (93.09%), Postives = 237/246 (96.34%), Query Frame = 0
BLAST of CmoCh01G004540 vs. NCBI nr
Match: XP_022949126.1 (developmental protein SEPALLATA 1-like [Cucurbita moschata] >XP_023523891.1 developmental protein SEPALLATA 1-like [Cucurbita pepo subsp. pepo] >KAG6607076.1 Agamous-like MADS-box protein MADS2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036768.1 Developmental protein SEPALLATA 2 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 470.7 bits (1210), Expect = 7.7e-129 Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0
BLAST of CmoCh01G004540 vs. NCBI nr
Match: XP_022998764.1 (developmental protein SEPALLATA 1-like [Cucurbita maxima]) HSP 1 Score: 464.2 bits (1193), Expect = 7.2e-127 Identity = 242/246 (98.37%), Postives = 244/246 (99.19%), Query Frame = 0
BLAST of CmoCh01G004540 vs. NCBI nr
Match: XP_022155022.1 (developmental protein SEPALLATA 1 [Momordica charantia]) HSP 1 Score: 443.7 bits (1140), Expect = 1.0e-120 Identity = 229/246 (93.09%), Postives = 239/246 (97.15%), Query Frame = 0
BLAST of CmoCh01G004540 vs. NCBI nr
Match: KAG7018196.1 (Developmental protein SEPALLATA 2, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 440.3 bits (1131), Expect = 1.1e-119 Identity = 229/246 (93.09%), Postives = 237/246 (96.34%), Query Frame = 0
BLAST of CmoCh01G004540 vs. NCBI nr
Match: XP_022955902.1 (developmental protein SEPALLATA 1 isoform X2 [Cucurbita moschata] >XP_022980708.1 developmental protein SEPALLATA 1 isoform X2 [Cucurbita maxima]) HSP 1 Score: 440.3 bits (1131), Expect = 1.1e-119 Identity = 229/246 (93.09%), Postives = 237/246 (96.34%), Query Frame = 0
BLAST of CmoCh01G004540 vs. TAIR 10
Match: AT5G15800.1 (K-box region and MADS-box transcription factor family protein ) HSP 1 Score: 353.6 bits (906), Expect = 1.3e-97 Identity = 190/252 (75.40%), Postives = 218/252 (86.51%), Query Frame = 0
BLAST of CmoCh01G004540 vs. TAIR 10
Match: AT5G15800.2 (K-box region and MADS-box transcription factor family protein ) HSP 1 Score: 345.1 bits (884), Expect = 4.6e-95 Identity = 190/263 (72.24%), Postives = 218/263 (82.89%), Query Frame = 0
BLAST of CmoCh01G004540 vs. TAIR 10
Match: AT3G02310.1 (K-box region and MADS-box transcription factor family protein ) HSP 1 Score: 335.1 bits (858), Expect = 4.7e-92 Identity = 179/250 (71.60%), Postives = 209/250 (83.60%), Query Frame = 0
BLAST of CmoCh01G004540 vs. TAIR 10
Match: AT1G24260.1 (K-box region and MADS-box transcription factor family protein ) HSP 1 Score: 280.8 bits (717), Expect = 1.1e-75 Identity = 159/250 (63.60%), Postives = 193/250 (77.20%), Query Frame = 0
BLAST of CmoCh01G004540 vs. TAIR 10
Match: AT1G24260.2 (K-box region and MADS-box transcription factor family protein ) HSP 1 Score: 280.4 bits (716), Expect = 1.4e-75 Identity = 159/251 (63.35%), Postives = 193/251 (76.89%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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